CFC564
Library CF
(Link to library)
Clone ID CFC564
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID CFC564F
(Link to Original site)
Representative DNA sequence
>CFC564 (CFC564Q) /CSM/CF/CFC5-C/CFC564Q.Seq.d/
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATG
GAAAGGTGCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWKG---


Translated Amino Acid sequence (All Frames)
Frame A:
tsqktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sy
cnc*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng
*nlh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfp
mcrtwleccnlndlr*rpimer---


Frame B:
lhkkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVI
ATVRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMG
KIYIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFP
CAVLGWNAAISMICGNVQLWKG---


Frame C:
ftknif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikll
qllevlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwv
kftlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsish
vpylvgmlqsq*favtsnygkv---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/ 1207 0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/ 1207 0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/ 1207 0.0
CFD640 (CFD640Q) /CSM/CF/CFD6-B/CFD640Q.Seq.d/ 1207 0.0
CFD614 (CFD614Q) /CSM/CF/CFD6-A/CFD614Q.Seq.d/ 1207 0.0
CFC564 (CFC564Q) /CSM/CF/CFC5-C/CFC564Q.Seq.d/ 1207 0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/ 1205 0.0
SFD744 (SFD744Q) /CSM/SF/SFD7-B/SFD744Q.Seq.d/ 1205 0.0
SFD261 (SFD261Q) /CSM/SF/SFD2-C/SFD261Q.Seq.d/ 1199 0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/ 1197 0.0

own update 2004. 5. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 819 0.0 5
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence. 74 4e-12 2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds. 72 1e-08 1
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds. 46 3e-06 2
BG444603|BG444603.1 GA__Ea0024O05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0024O05f, mRNA sequence. 42 2e-04 2
AW616676|AW616676.1 EST323087 L. hirsutum trichome, Cornell University Lycopersicon hirsutum cDNA clone cLHT12I1 5', mRNA sequence. 54 3e-04 2
BG887757|BG887757.1 EST513608 cSTD Solanum tuberosum cDNA clone cSTD7K13 5' sequence, mRNA sequence. 54 4e-04 2
BI920919|BI920919.1 EST540854 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE26J22 5' end, mRNA sequence. 54 4e-04 2
BG887113|BG887113.1 EST512964 cSTD Solanum tuberosum cDNA clone cSTD3M14 5' sequence, mRNA sequence. 54 5e-04 2
CK269860|CK269860.1 EST715938 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POACP47 5' end, mRNA sequence. 54 5e-04 2
dna update 2004. 5.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ... 388 e-107
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase... 243 2e-63
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ... 240 3e-62
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326... 239 4e-62
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas... 234 2e-60
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti... 233 2e-60
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet... 232 7e-60
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen... 232 7e-60
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM... 230 3e-59
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ... 229 4e-59
protein update 2009. 5.12
PSORT

psg: 0.78 gvh: 0.31 alm: 0.29 top: 0.63 tms: 0.07 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 1.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: vesicles of secretory system
20.0 %: nuclear
8.0 %: mitochondrial
8.0 %: Golgi
8.0 %: endoplasmic reticulum
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: plasma membrane

>> prediction for CFC564 is cyt

5' end seq. ID CFC564F
5' end seq.
>CFC564F.Seq
ACTTCACAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGA
ATATCCATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGG
AAAATGGGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTAT
TGCAACTGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGC
AGCAAAAGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAAT
TGGTCAAGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGG
TAAAATTTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGC
AACTGGTTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACAT
TTTAATGGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCC
ATGTGCCGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATG
GAAAGGTGC----------
Length of 5' end seq. 609
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -