>CFC559 (CFC559Q) /CSM/CF/CFC5-C/CFC559Q.Seq.d/
XXXXXXXXXXCAGAGTGTGANCAAATTAGAAATGAATTATATGTTGAAGCAGATTTTTAT
TGTTTATCAGGTTTAAAAGAATTGTTATATCCATATCATTTTTATCAATCAAAAATTTTA
TCTGTTGAATTATCAAAAGATTTAATTAGATTATTAAAATCAAACATTACAAATTAAAAN
ANCAAGATTATTATATAGAGGATCAGATAATGATTTTTCATCAAAGAGATTTCATGAAAT
TATGTGATTTTAAAGGATCCACAATTACAATTATTAGATCAAAGGATTGTATATTTGGAG
GATATGCAAGTCGTAATTGGACATTGTCTACCCAATATACTCAAGATGATAAATCATTTT
TATTTGATTTGGCAAATATACCACCATCAATTATAAAAAAAGAAGAAGGTTCATCAAGTC
AATCAATTTATTCAAACATTAATTATGGTCCAACTTTTGGTATATTGGGTAAAAATTTAN
CAATTTCAAATAATTGTAATATAAATAAAGAGAATTTCTTTGAATCTTATTATGATAGTA
AAGGAAAAGGTAAAAGATATTTTCAAGTTGATGAATATGAAGTTTTTAAAATTGNAATGT
TAACAATAATTTTGNAAAAAA

---rv*xn*k*iic*srfllfirfkrivisisflsiknfic*iikrfn*IIKIKHYKLKX
QDYYIEDQIMIFHQRDFMKLCDFKGSTITIIRSKDCIFGGYASRNWTLSTQYTQDDKSFL
FDLANIPPSIIKKEEGSSSQSIYSNINYGPTFGILGKNLXISNNCNINKENFFESYYDSK
GKGKRYFQVDEYEVFKIXMLTIILXK

Frame A:
---rv*xn*k*iic*srfllfirfkrivisisflsiknfic*iikrfn*IIKIKHYKLKX
QDYYIEDQIMIFHQRDFMKLCDFKGSTITIIRSKDCIFGGYASRNWTLSTQYTQDDKSFL
FDLANIPPSIIKKEEGSSSQSIYSNINYGPTFGILGKNLXISNNCNINKENFFESYYDSK
GKGKRYFQVDEYEVFKIXMLTIILXK


Frame B:
---ecxqirnelyveadfyclsglkellypyhfyqskilsvelskdlirllksnitn*xx
kiii*rir**ffikeis*nyvilkdpqlqlldqrivyledmqvvighclpnilkminhfy
liwqiyhhql*kkkkvhqvnqfiqtlimvqllvywvkixqfqiivi*ikrislnlimivk
ekvkdifklmnmkflklxc*q*fxkk


Frame C:
---svxklemnymlkqifivyqv*kncyihiifinqkfyllnyqki*ldy*nqtlqikxx
rllyrgsdndfsskrfheim*f*rihnyny*ikglyiwricks*ldivypiysr**iifi
*fgkyttinykkrrrfiksinlfkh*lwsnfwyig*kfxnfk*l*yk*refl*ill***r
kr*kifss**i*sf*nxnvnnnfxk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC559 (CFC559Q) /CSM/CF/CFC5-C/CFC559Q.Seq.d/                        791   0.0
SFI477 (SFI477Q) /CSM/SF/SFI4-D/SFI477Q.Seq.d/                        751   0.0
CFC308 (CFC308Q) /CSM/CF/CFC3-A/CFC308Q.Seq.d/                        751   0.0
CFI843 (CFI843Q) /CSM/CF/CFI8-B/CFI843Q.Seq.d/                        726   0.0
CFF701 (CFF701Q) /CSM/CF/CFF7-A/CFF701Q.Seq.d/                        726   0.0
SSG557 (SSG557Q) /CSM/SS/SSG5-C/SSG557Q.Seq.d/                        692   0.0
SSG621 (SSG621Q) /CSM/SS/SSG6-A/SSG621Q.Seq.d/                        611   e-174
SFI877 (SFI877Q) /CSM/SF/SFI8-D/SFI877Q.Seq.d/                        347   1e-94
SFK467 (SFK467Q) /CSM/SF/SFK4-C/SFK467Q.Seq.d/                        100   5e-20
SFG255 (SFG255Q) /CSM/SF/SFG2-C/SFG255Q.Seq.d/                         38   0.15

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   3e-09  25
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   9e-09  24
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   9e-06  23
AC137827|AC137827.18 Medicago truncatula clone mth2-20g23, complete sequence.    42   3e-05  8
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   3e-05  11
AC136737|AC136737.2 Mus musculus clone RP23-109N15, LOW-PASS SEQUENCE SAMPLING.    42   4e-05  5
AP001119|AP001119.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 2/2.    30   3e-04  16
Z98551|Z98551.1 Plasmodium falciparum MAL3P6.                      42   5e-04  10
CR382400|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5.    34   8e-04  12
AC148758|AC148758.8 Medicago truncatula clone mth2-50l17, WORKING DRAFT SEQUENCE, 14 unordered pieces.    34   0.001  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU643477_9(EU643477|pid:none) Adineta vaga clone Av_TEL_K_A retr...    55   2e-06
BC155645_1(BC155645|pid:none) Danio rerio si:ch211-197g15.7, mRN...    42   0.018
(Q5ZJX5) RecName: Full=TLD domain-containing protein KIAA1609 ho...    40   0.039
AE014134_1321(AE014134|pid:none) Drosophila melanogaster chromos...    40   0.052
(Q1LWV7) RecName: Full=TLD domain-containing protein KIAA1609 ho...    40   0.052
AE014134_1322(AE014134|pid:none) Drosophila melanogaster chromos...    40   0.052
BX649327_11(BX649327|pid:none) Zebrafish DNA sequence from clone...    40   0.067
(Q6DDZ9) RecName: Full=TLD domain-containing protein KIAA1609 ho...    40   0.067
BC124820_1(BC124820|pid:none) Danio rerio similar to interferon-...    39   0.11
AB046829_1(AB046829|pid:none) Homo sapiens mRNA for KIAA1609 pro...    37   0.44

 psg: 0.45  gvh: 0.37  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFC559 is nuc

>CFC559Z.Seq
----------CAGAGTGTGANCAAATTAGAAATGAATTATATGTTGAAGCAGATTTTTAT
TGTTTATCAGGTTTAAAAGAATTGTTATATCCATATCATTTTTATCAATCAAAAATTTTA
TCTGTTGAATTATCAAAAGATTTAATTAGATTATTAAAATCAAACATTACAAATTAAAAN
ANCAAGATTATTATATAGAGGATCAGATAATGATTTTTCATCAAAGAGATTTCATGAAAT
TATGTGATTTTAAAGGATCCACAATTACAATTATTAGATCAAAGGATTGTATATTTGGAG
GATATGCAAGTCGTAATTGGACATTGTCTACCCAATATACTCAAGATGATAAATCATTTT
TATTTGATTTGGCAAATATACCACCATCAATTATAAAAAAAGAAGAAGGTTCATCAAGTC
AATCAATTTATTCAAACATTAATTATGGTCCAACTTTTGGTATATTGGGTAAAAATTTAN
CAATTTCAAATAATTGTAATATAAATAAAGAGAATTTCTTTGAATCTTATTATGATAGTA
AAGGAAAAGGTAAAAGATATTTTCAAGTTGATGAATATGAAGTTTTTAAAATTGNAATGT
TAACAATAATTTTGNAAAAAA