CFC556
Library CF
(Link to library)
Clone ID CFC556
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16178-1
Original site URL
Representative seq. ID CFC556Z
(Link to Original site)
Representative DNA sequence
>CFC556 (CFC556Q) /CSM/CF/CFC5-C/CFC556Q.Seq.d/
XXXXXXXXXXTGGGCATCAAATCATATCAAAGAAGCATAAAATCAACCGTATTAAAGGTT
GACTGGCATCCAAACAGTTTATTATTGGCAACCTCATCCTCTGACTACAAGGTTAGAGTA
TTCGACGCCTACATAAAGAAAGCCGATGGTCGTAGTGTCACTCGTCCATACGGTGAAGTC
GCTTTTGGTGAACCAGTCTTTGAATTTGACCAATGCGCCTCATGGGTCCATGCCCTCAAA
TGGTCCCCATCCGGTAGTACCTTGGCTTACTCCTCACACGATGGTGTCTTTGCCGTTGCA
AACTTTTCAATCAATCCACCAACCATCGAAAAACTCAGAGTTCGTAATTTACCATTACGT
GATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCTCCACTT
TTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTGAAGGT
GGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAGACCTT
GGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTACTTCA
ATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCNGATTTCAGTACCTCTGGTTTAGAT
GGTAACAGTTGTCGTATGGCATGTAAAAGCTCTNAAGCTAAAAATAATTCAAAGTCA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---GIKSYQRSIKSTVLKVDWHPNSLLLATSSSDYKVRVFDAYIKKADGRSVTRPYGEVA
FGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSINPPTIEKLRVRNLPLRD
LLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARKLFQNKVDLG
ESKSADKKLTTVHQNCITSIVPFKSVGGVVSDFSTSGLDGNSCRMACKSSXAKNNSKS


Translated Amino Acid sequence (All Frames)
Frame A:
---ghqiiskkhkinrikg*laskqfiignlil*lqg*sirrlhkesrws*chssir*sr
fw*tsl*i*pmrlmgpcpqmvpir*ylgllltrwclcrcklfnqstnhrktqss*ftit*
splhh*klyrrcwlrlcstfnh*skrleifw*ng*gl*rwccrwl*nlcs*tlpk*srpw
*ikicr*kvnnrssklyyfnrsiqecrwcrlxfqylwfrw*qlsygm*klxs*k*fkv


Frame B:
---GIKSYQRSIKSTVLKVDWHPNSLLLATSSSDYKVRVFDAYIKKADGRSVTRPYGEVA
FGEPVFEFDQCASWVHALKWSPSGSTLAYSSHDGVFAVANFSINPPTIEKLRVRNLPLRD
LLYITENSIAGVGYDCAPLLITNQNGWKYSGEMDKASEGGAAAGSETSARKLFQNKVDLG
ESKSADKKLTTVHQNCITSIVPFKSVGGVVSDFSTSGLDGNSCRMACKSSXAKNNSKS


Frame C:
---asnhikea*nqpy*rltgiqtvyywqphplttrleystpt*rkpmvvvslvhtvksl
lvnqslnltnaphgsmpsngphpvvpwltphtmvslplqtfqsihqpsknsefviyhyvi
sftslktlspvlvtivlhf*sliktvgnilvkwirplkvvlplalkpllvnsskik*tlv
nqnlpiks*qpfikivllqsfhsrv*vvssxisvplv*mvtvvvwhvkalklkiiqs


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC556 (CFC556Q) /CSM/CF/CFC5-C/CFC556Q.Seq.d/ 1390 0.0
AFJ120 (AFJ120Q) /CSM/AF/AFJ1-A/AFJ120Q.Seq.d/ 1306 0.0
FC-AL11 (FC-AL11Q) /CSM/FC/FC-AL/FC-AL11Q.Seq.d/ 1298 0.0
FC-208 (FC-208Q) /CSM/CG/CG-FC/FC-208Q.Seq.d/ 1298 0.0
AFD360 (AFD360Q) /CSM/AF/AFD3-C/AFD360Q.Seq.d/ 1298 0.0
VFH613 (VFH613Q) /CSM/VF/VFH6-A/VFH613Q.Seq.d/ 1296 0.0
VFI561 (VFI561Q) /CSM/VF/VFI5-C/VFI561Q.Seq.d/ 1294 0.0
AFM674 (AFM674Q) /CSM/AF/AFM6-D/AFM674Q.Seq.d/ 1277 0.0
SFI444 (SFI444Q) /CSM/SF/SFI4-B/SFI444Q.Seq.d/ 1271 0.0
AFB557 (AFB557Q) /CSM/AF/AFB5-C/AFB557Q.Seq.d/ 1229 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF095930|AF095930.1 Dictyostelium discoideum p41-Arc (arpD) mRNA, complete cds. 1223 0.0 3
AC124921|AC124921.3 Rattus norvegicus clone CH230-214L24, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 50 0.046 1
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces. 50 0.046 1
CN139250|CN139250.1 OX1_21_A04.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_21_A04_A002 3', mRNA sequence. 38 0.11 2
CB082319|CB082319.1 hk67e10.g1 Gnetum leaves (NYBG) Gnetum gnemon cDNA clone hk67e10, mRNA sequence. 46 0.72 1
L02122|L02122.1 E. coli DNA helicase II (uvrD) gene, 3' end, Mg-transport system I (corA) gene, complete cds, chloamphenicol sensitive (rarD) gene, complete cds, detergent-resistant phospholipase A (pldA) gene, 5' end. 40 2.2 2
CF974266|CF974266.1 PSU_nep1\G03 Defense-related ESTs from Cacao Leaves Theobroma cacao cDNA, mRNA sequence. 44 2.8 1
CA085018|CA085018.1 SCEZAM2059G05.g AM2 Saccharum officinarum cDNA clone SCEZAM2059G05 5', mRNA sequence. 44 2.8 1
BX005183|BX005183.9 Zebrafish DNA sequence from clone CH211-136A14 in linkage group 3. 38 4.0 2
AC109607|AC109607.32 Mus musculus clone rp23-146a22 map 8 strain C57BL/6J, WORKING DRAFT SEQUENCE, 8 ordered pieces. 38 4.2 2
dna update 2004. 5.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ720885_1(AJ720885|pid:none) Gallus gallus mRNA for hypothetica... 136 5e-31
EU961854_1(EU961854|pid:none) Zea mays clone 238674 actin-relate... 136 7e-31
AK073919_1(AK073919|pid:none) Oryza sativa Japonica Group cDNA c... 136 7e-31
BC071519_1(BC071519|pid:none) Danio rerio zgc:86896, mRNA (cDNA ... 134 2e-30
BC073411_1(BC073411|pid:none) Xenopus laevis MGC80877 protein, m... 134 2e-30
BC076887_1(BC076887|pid:none) Xenopus tropicalis actin related p... 134 2e-30
BC155744_1(BC155744|pid:none) Danio rerio zgc:86896, mRNA (cDNA ... 134 2e-30
EF011872_1(EF011872|pid:none) Xenopus laevis actin-related prote... 132 8e-30
EF678447_1(EF678447|pid:none) Picea sitchensis clone WS02921_O12... 130 5e-29
EU868834_1(EU868834|pid:none) Sus scrofa actin related protein 2... 130 5e-29
protein update 2009. 5.12
PSORT

psg: 0.69 gvh: 0.55 alm: 0.43 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
32.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CFC556 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC556Z
3' end seq.
>CFC556Z.Seq
----------TGGGCATCAAATCATATCAAAGAAGCATAAAATCAACCGTATTAAAGGTT
GACTGGCATCCAAACAGTTTATTATTGGCAACCTCATCCTCTGACTACAAGGTTAGAGTA
TTCGACGCCTACATAAAGAAAGCCGATGGTCGTAGTGTCACTCGTCCATACGGTGAAGTC
GCTTTTGGTGAACCAGTCTTTGAATTTGACCAATGCGCCTCATGGGTCCATGCCCTCAAA
TGGTCCCCATCCGGTAGTACCTTGGCTTACTCCTCACACGATGGTGTCTTTGCCGTTGCA
AACTTTTCAATCAATCCACCAACCATCGAAAAACTCAGAGTTCGTAATTTACCATTACGT
GATCTCCTTTACATCACTGAAAACTCTATCGCCGGTGTTGGTTACGATTGTGCTCCACTT
TTAATCACTAATCAAAACGGTTGGAAATATTCTGGTGAAATGGATAAGGCCTCTGAAGGT
GGTGCTGCCGCTGGCTCTGAAACCTCTGCTCGTAAACTCTTCCAAAATAAAGTAGACCTT
GGTGAATCAAAATCTGCCGATAAAAAGTTAACAACCGTTCATCAAAATTGTATTACTTCA
ATCGTTCCATTCAAGAGTGTAGGTGGTGTCGTCTCNGATTTCAGTACCTCTGGTTTAGAT
GGTAACAGTTGTCGTATGGCATGTAAAAGCTCTNAAGCTAAAAATAATTCAAAGTCA
Length of 3' end seq. 707
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -