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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CFC543
Library CF
(Link to library)
Clone ID CFC543
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC543P
(Link to Original site)
Representative DNA sequence 
>CFC543 (CFC543Q) /CSM/CF/CFC5-B/CFC543Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAAXXXXXXXXXXTGTCGAATGTCCAGATTTCCATANATGTGTTGAAANACGTGGTGGT
ATCTTAAGTTGTGAATTTGATCCNCCAAGACAACCAAGATCCCTTGATTGGGCTGAAAAT
GAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGAT
TATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGNCNAT
TATTATGGTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKXKKK---

---VECPDFHXCVEXRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYD
GRDGDYDGDYDGDYDDXXYYG
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkkxkkk---

---crmsrfpxmc*xtwwylkl*i*sxkttkip*lg*k*k**s*l**s*l****i*w*l*
wp*r*l*w*l*w*l**xxllw

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKXKKK---

---VECPDFHXCVEXRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYD
GRDGDYDGDYDGDYDDXXYYG

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkkxqkk---

---snvqisixvlkxvvvs*vvnlixqdnqdpliglkmkmmivtmmivtmmmmnmmvimm
avtvtmmvimmvimmmxiimv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLJ720 (SLJ720Q) /CSM/SL/SLJ7-A/SLJ720Q.Seq.d/                        178   4e-44
SLI767 (SLI767Q) /CSM/SL/SLI7-C/SLI767Q.Seq.d/                        178   4e-44
SLI753 (SLI753Q) /CSM/SL/SLI7-C/SLI753Q.Seq.d/                        178   4e-44
SLI573 (SLI573Q) /CSM/SL/SLI5-D/SLI573Q.Seq.d/                        178   4e-44
SLI384 (SLI384Q) /CSM/SL/SLI3-D/SLI384Q.Seq.d/                        178   4e-44
SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        178   4e-44
SLH722 (SLH722Q) /CSM/SL/SLH7-A/SLH722Q.Seq.d/                        178   4e-44
SLH522 (SLH522Q) /CSM/SL/SLH5-A/SLH522Q.Seq.d/                        178   4e-44
SLH221 (SLH221Q) /CSM/SL/SLH2-A/SLH221Q.Seq.d/                        178   4e-44
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        178   4e-44
own update 2001. 8.26
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   178   1e-80  4
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   178   1e-61  3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   2e-27  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   1e-13  1
BX957233|BX957233.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-224H10.    36   0.078  4
AC024960|AC024960.2 Homo sapiens chromosome 18 clone RP11-431C11 map 18, WORKING DRAFT SEQUENCE, 23 unordered pieces.    34   0.13   5
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.34   2
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12.    46   0.36   1
BX571707|BX571707.11 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-93K4.    46   0.36   1
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING.    46   0.36   1
dna update 2004. 5.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    85   9e-16
protein update 2008.12.24
PSORT 

 psg: 0.23  gvh: 0.43  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 28.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for CFC543 is nuc
5' end seq. ID CFC543F
5' end seq. 
>CFC543F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFC543Z
3' end seq. 
>CFC543Z.Seq
----------TGTCGAATGTCCAGATTTCCATANATGTGTTGAAANACGTGGTGGTATCT
TAAGTTGTGAATTTGATCCNCCAAGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAA
ATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGATTATG
ATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGNCNATTATT
ATGGTG
Length of 3' end seq. 236
Connected seq. ID CFC543P
Connected seq. 
>CFC543P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAA----------TGTCGAATGTCCAGATTTCCATANATGTGTTGAAANACGTGGTGGT
ATCTTAAGTTGTGAATTTGATCCNCCAAGACAACCAAGATCCCTTGATTGGGCTGAAAAT
GAAAATGATGATCGTGACTATGATGATCGTGACTATGATGATGATGAATATGATGGTGAT
TATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGGTGATTATGATGATGNCNAT
TATTATGGTG
Length of connected seq. 360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -