CFC537
Library CF
(Link to library)
Clone ID CFC537
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID CFC537P
(Link to Original site)
Representative DNA sequence
>CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/
TATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA
CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG
GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC
GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA
CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA
CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA
GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG
GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA
CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG
GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCAA
AATCATATCGTCATATGCATGGTTTCTCATCACATACCTTAXXXXXXXXXXAGTTTCCAT
TCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAA
GATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAA
TCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCC
AGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATAC
TCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGT
AAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGG
TAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGC
TCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGA
CGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTT
CGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGC
CGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGG
TATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATT
AAAAATAATAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
yfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER
IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER
DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLG
QTPESTHQVSILFSDRGTPKSYRHMHGFSSHTL---

---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkiikk


Translated Amino Acid sequence (All Frames)
Frame A:
yilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivn
vsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilk
eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*
vkhqnqhikyqfyslievhqnhivicmvshhip---

---sfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tscll
tiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhg
cqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*
rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c**chqirc*ik
lvnqyiknnkk

Frame B:
ifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*t
yprtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*k
rskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgffr
sntrintssinfil**rytkiissyawflityl---

---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkiikk

Frame C:
yfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRER
IPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSER
DPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFLG
QTPESTHQVSILFSDRGTPKSYRHMHGFSSHTL---

---fpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllklnklpsh
hptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvswl
smvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclk
mpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlmmssnslldqt
cksiy*k**k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 2611 0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1463 0.0
AFE580 (AFE580Q) /CSM/AF/AFE5-D/AFE580Q.Seq.d/ 1463 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1461 0.0
SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1461 0.0
AFN369 (AFN369Q) /CSM/AF/AFN3-C/AFN369Q.Seq.d/ 1459 0.0
AFM764 (AFM764Q) /CSM/AF/AFM7-C/AFM764Q.Seq.d/ 1455 0.0
AFM195 (AFM195Q) /CSM/AF/AFM1-D/AFM195Q.Seq.d/ 1455 0.0
AFD459 (AFD459Q) /CSM/AF/AFD4-C/AFD459Q.Seq.d/ 1455 0.0
AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/ 1449 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1463 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1463 0.0 14
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 2e-64 7
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 1e-32 4
AP004595|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 72 3e-32 10
AX536932|AX536932.1 Sequence 533 from Patent WO02064766. 101 7e-29 3
AR375090|AR375090.1 Sequence 96 from patent US 6605709. 76 7e-28 3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 4e-27 3
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 4e-27 3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 2e-26 3
dna update 2004. 5.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 493 e-138
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 322 2e-86
(O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 317 6e-85
CP000300_481(CP000300|pid:none) Methanococcoides burtonii DSM 62... 310 1e-82
(Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 301 3e-80
CQ796333_1(CQ796333|pid:none) Sequence 109 from Patent WO2004027... 300 6e-80
AE017333_3935(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 300 6e-80
CP000560_826(CP000560|pid:none) Bacillus amyloliquefaciens FZB42... 296 1e-78
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 295 2e-78
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 295 2e-78
protein update 2009. 5.12
PSORT

psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: extracellular, including cell wall
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for CFC537 is cyt

5' end seq. ID CFC537F
5' end seq.
>CFC537F.Seq
TATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA
CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG
GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC
GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA
CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA
CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA
GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG
GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA
CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG
GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCAA
AATCATATCGTCATATGCATGGTTTCTCATCACATACCTTA----------
Length of 5' end seq. 641
3' end seq. ID CFC537Z
3' end seq.
>CFC537Z.Seq
----------AGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCA
ATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTC
GTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCT
CACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTC
TCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAG
TCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGG
CTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAG
AGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAAC
CATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTG
AAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCA
AAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTC
GTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAA
ACTTGTAAATCAATATATTAAAAATAATAAAAAAA
Length of 3' end seq. 745
Connected seq. ID CFC537P
Connected seq.
>CFC537P.Seq
TATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTAA
CCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAATG
GTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAAC
GTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTTA
CCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGAA
CACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAAA
GAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTCG
GTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCATA
CACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTAG
GTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCAA
AATCATATCGTCATATGCATGGTTTCTCATCACATACCTTA----------AGTTTCCAT
TCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAA
GATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAA
TCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCC
AGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATAC
TCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGT
AAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGG
TAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGC
TCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGA
CGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTT
CGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGC
CGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGG
TATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATATT
AAAAATAATAAAAAAA
Length of connected seq. 1386
Full length Seq ID -
Full length Seq. -
Length of full length seq. -