NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC533
Library CF
(Link to library)
Clone ID CFC533
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC533P
(Link to Original site)
Representative DNA sequence 
>CFC533 (CFC533Q) /CSM/CF/CFC5-B/CFC533Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXXGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATG
GCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTG
CCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTG
ATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAA
AATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATA
GATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAA
GATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATG
ATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATG
ATGGTGATTATGATGATGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACA
ATGATAATGATTGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATT
GGAATGATGATGACTTCCAAGATGCAAATGATGAATGGGACTATTAAGCCATTATTTTTA
AAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---DLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDN
TRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRS
LDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDND
NDWGNDWDNDWDNEDGDNWNDDDFQDANDEWDY*aiifkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---DLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNSCARDEKCVATKDRIICVKPTCDN
TRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDFHRCVERRGGILSCEFDPPRQPRS
LDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGDYDGDYDDDNYYGDDDYDNDWDND
NDWGNDWDNDWDNEDGDNWNDDDFQDANDEWDY*aiifkk

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---tsnvrevmnvksnmmapnvvsrelqrdhvvnqihvpemknvlppktesfv*nqlvii
lvvlqitiayvviklmv*nvfqivrkqdvmmsnvqisidvlkdvvvs*vvnlihqdnqdp
liglkmkmmivtmmivtmmmmnmmvimmavtvtmmvimmvimmmtiimvmmtmimigtmi
migvmigimigtmkmviigmmmtskmqmmngtikplflkk

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknqkk---

---pqm*erl*m*nqt*wlqmlcqensketml*tkfmcqr*kmcchqrqnhlcktnl**y
slssklplhmw**n*wckmcsrl*eskm**crmsrfp*mc*ktwwylkl*i*stkttkip
*lg*k*k**s*l**s*l****i*w*l*wp*r*l*w*l*w*l***qllw***l***lgq**
*lg**lg**lgq*rw**le***lprck**mgllshyf*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLH820 (SLH820Q) /CSM/SL/SLH8-A/SLH820Q.Seq.d/                        739   0.0
SLG753 (SLG753Q) /CSM/SL/SLG7-C/SLG753Q.Seq.d/                        739   0.0
SLB231 (SLB231Q) /CSM/SL/SLB2-B/SLB231Q.Seq.d/                        739   0.0
SLB168 (SLB168Q) /CSM/SL/SLB1-C/SLB168Q.Seq.d/                        739   0.0
SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/                        739   0.0
SFL183 (SFL183Q) /CSM/SF/SFL1-D/SFL183Q.Seq.d/                        739   0.0
SFK812 (SFK812Q) /CSM/SF/SFK8-A/SFK812Q.Seq.d/                        739   0.0
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/                        739   0.0
SFJ886 (SFJ886Q) /CSM/SF/SFJ8-D/SFJ886Q.Seq.d/                        739   0.0
SFJ774 (SFJ774Q) /CSM/SF/SFJ7-D/SFJ774Q.Seq.d/                        739   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   739   0.0    4
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   739   0.0    3
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   7e-30  3
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   2e-13  1
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence.    56   3e-04  3
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds.    56   8e-04  1
AC139189|AC139189.1 Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence.    40   0.15   4
AL589681|AL589681.19 Mouse DNA sequence from clone RP23-438H3 on chromosome X.    36   0.22   7
AP001699|AP001699.1 Homo sapiens genomic DNA, chromosome 21q, section 43/105.    32   0.37   11
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12.    46   0.79   1
dna update 2004. 5.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...   284   2e-75
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...   104   3e-21
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...   103   5e-21
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    60   8e-08
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...    55   3e-06
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    50   8e-05
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    49   2e-04
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    47   9e-04
CR940353_318(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.007
(O88799) RecName: Full=Zonadhesin; Flags: Precursor;  &T42215(T4...    43   0.010
protein update 2009. 5.12
PSORT 

 psg: 0.11  gvh: 0.15  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.26  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for CFC533 is nuc
5' end seq. ID CFC533F
5' end seq. 
>CFC533F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFC533Z
3' end seq. 
>CFC533Z.Seq
----------GACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATGGCTC
CAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTGCCAG
AGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTGATAA
TACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAAAATG
TGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATAGATG
TGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAAGATC
CCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATGATGA
TGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATGATGG
TGATTATGATGATGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACAATGA
TAATGATTGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATTGGAA
TGATGATGACTTCCAAGATGCAAATGATGAATGGGACTATTAAGCCATTATTTTTAAAAA
AA
Length of 3' end seq. 652
Connected seq. ID CFC533P
Connected seq. 
>CFC533P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------GACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAACATGATG
GCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATTCATGTG
CCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAACTTGTG
ATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATGGTGTAA
AATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATTTCCATA
GATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGACAACCAA
GATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTGACTATG
ATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTGATTATG
ATGGTGATTATGATGATGACAATTATTATGGTGATGATGACTATGATAATGATTGGGACA
ATGATAATGATTGGGGTAATGATTGGGATAATGATTGGGACAATGAAGATGGTGATAATT
GGAATGATGATGACTTCCAAGATGCAAATGATGAATGGGACTATTAAGCCATTATTTTTA
AAAAAA
Length of connected seq. 776
Full length Seq ID -
Full length Seq. -
Length of full length seq. -