CFC530
Library CF
(Link to library)
Clone ID CFC530
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12846-1
Original site URL
Representative seq. ID CFC530Z
(Link to Original site)
Representative DNA sequence
>CFC530 (CFC530Q) /CSM/CF/CFC5-B/CFC530Q.Seq.d/
XXXXXXXXXXTGGAATCATCCACTCCCTTTTCTCAAAAATTGATGTCAAACGAACAACAA
CAACAACAACAACCACAAAATTTCTCTTTCCCACAAAAACAACAGCAAGCTGTTGACCTC
AATGAATTCTTTGGTTTAAATTCAGTTGGGGGTGGTGGTCATTTCAAAGCATGCTTTTCA
CCAGATAACAGTTTCAATTTGTACAATGATCTTTCACCANAGGCTAAATCTTGTTTCAAA
ATTTTCGCTAAAAAGTGTAAACCAACCACCGAACATGAAGTCTTTAACAAGGTTATGAAT
TTGTTGAACAATTTAACTCTTGAAGAAATTGATTTGATTATCAAGTCCGTTTCACGTATT
GAAAAGTATGATACGCTCATTGCAAAGGTCTTTGCCACCGAACTTGATGTAGCTAACTTC
CCAAGTATCAATGCCAAGCTTTTGCTCCAAAATTTATTGGTCGAAATTATTGACCAAGAC
AGAAAATTGGTCTACCACCTCTTCCAACTAGATACTGATCATATTCACTCACTCAAAAAT
AAATGTTCAATCTTATCAATCTCTACCCCAGCCAGTGATTCCCTTAATTTCTCTGCTTTA
CTTCAAGAAGATAGTAATAACAATAACAATAACAATAACAATAACAAAAACAAATAAAAA
AACACCAACTAATCAAATAACAATTAAAACAACTATAATTATTATTTAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ESSTPFSQKLMSNEQQQQQQPQNFSFPQKQQQAVDLNEFFGLNSVGGGGHFKACFSP
DNSFNLYNDLSPXAKSCFKIFAKKCKPTTEHEVFNKVMNLLNNLTLEEIDLIIKSVSRIE
KYDTLIAKVFATELDVANFPSINAKLLLQNLLVEIIDQDRKLVYHLFQLDTDHIHSLKNK
CSILSISTPASDSLNFSALLQEDSNNNNNNNNNNKNK*kntn*snnn*nnynyylk


Translated Amino Acid sequence (All Frames)
Frame A:
---giihslfskidvkrttttttttkflfptkttasc*pq*ilwfkfswgwwsfqsmlft
r*qfqfvq*sftxg*ilfqnfr*kv*tnhrt*sl*qgyefveqfns*rn*fdyqvrfty*
kv*yahckglchrt*cs*lpkyqcqafapkfigrny*prqkiglpplptry*sysltqk*
mfnlinlypsq*fp*flcftsrr***q*q*q*q*qkqikkhqlik*qlkql*llfk


Frame B:
---ESSTPFSQKLMSNEQQQQQQPQNFSFPQKQQQAVDLNEFFGLNSVGGGGHFKACFSP
DNSFNLYNDLSPXAKSCFKIFAKKCKPTTEHEVFNKVMNLLNNLTLEEIDLIIKSVSRIE
KYDTLIAKVFATELDVANFPSINAKLLLQNLLVEIIDQDRKLVYHLFQLDTDHIHSLKNK
CSILSISTPASDSLNFSALLQEDSNNNNNNNNNNKNK*kntn*snnn*nnynyylk


Frame C:
---nhplpflkn*cqtnnnnnnnhkislshknnsklltsmnslv*iqlgvvviskhafhq
itvsictmifhxrlnlvskfslksvnqppnmksltrl*ic*ti*llkkli*lsspfhvlk
smirslqrslppnlm*ltsqvsmpsfcskiywsklltktenwsttssn*iliifthskin
vqsyqslpqpviplisllyfkkivitititititktnkktptnqitikttiiii*


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC530 (CFC530Q) /CSM/CF/CFC5-B/CFC530Q.Seq.d/ 1065 0.0
AFI761 (AFI761Q) /CSM/AF/AFI7-C/AFI761Q.Seq.d/ 1041 0.0
CFB167 (CFB167Q) /CSM/CF/CFB1-C/CFB167Q.Seq.d/ 1025 0.0
AFL712 (AFL712Q) /CSM/AF/AFL7-A/AFL712Q.Seq.d/ 819 0.0
CFG748 (CFG748Q) /CSM/CF/CFG7-B/CFG748Q.Seq.d/ 722 0.0
SSG506 (SSG506Q) /CSM/SS/SSG5-A/SSG506Q.Seq.d/ 36 0.70
AHH546 (AHH546Q) /CSM/AH/AHH5-B/AHH546Q.Seq.d/ 36 0.70
AFI519 (AFI519Q) /CSM/AF/AFI5-A/AFI519Q.Seq.d/ 36 0.70
VSJ357 (VSJ357Q) /CSM/VS/VSJ3-C/VSJ357Q.Seq.d/ 34 2.8
VHJ343 (VHJ343Q) /CSM/VH/VHJ3-B/VHJ343Q.Seq.d/ 34 2.8

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AP003470|AP003470.2 Homo sapiens genomic DNA, chromosome 8q23, clone: KB1460A12. 44 0.24 3
BX323087|BX323087.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-212J22. 34 0.38 2
AC134950|AC134950.2 Danio rerio clone CH211-265K12 strain Tue, WORKING DRAFT SEQUENCE, 4 ordered pieces. 34 0.38 2
AC146631|AC146631.16 Medicago truncatula clone mth2-7g1, WORKING DRAFT SEQUENCE, 5 unordered pieces. 36 0.44 5
AC133780|AC133780.25 Medicago truncatula clone mth2-27f3, WORKING DRAFT SEQUENCE, 2 ordered pieces. 36 0.55 6
AC148811|AC148811.2 Canis familiaris clone RP81-314M16, WORKING DRAFT SEQUENCE, 11 unordered pieces. 46 0.71 1
AC145856|AC145856.2 Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence. 32 0.83 9
BX936282|BX936282.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 32 1.4 2
BX957361|BX957361.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-269O24. 32 1.4 2
BX511225|BX511225.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 1.9 8
dna update 2004. 5.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000557_746(CP000557|pid:none) Geobacillus thermodenitrificans ... 35 2.9
CP000263_114(CP000263|pid:none) Buchnera aphidicola str. Cc (Cin... 35 2.9
CP000395_850(CP000395|pid:none) Borrelia afzelii PKo, complete g... 34 3.8
CP001205_800(CP001205|pid:none) Borrelia burgdorferi ZS7, comple... 34 3.8
AE000783_837(AE000783|pid:none) Borrelia burgdorferi B31, comple... 34 3.8
CP001056_1948(CP001056|pid:none) Clostridium botulinum B str. Ek... 34 3.8
CP000721_4798(CP000721|pid:none) Clostridium beijerinckii NCIMB ... 34 4.9
AF395444_1(AF395444|pid:none) Homo sapiens PI-3-kinase ATX mRNA,... 33 6.4
AB061371_1(AB061371|pid:none) Homo sapiens smg-1 mRNA for phosph... 33 6.4
AY014957_1(AY014957|pid:none) Homo sapiens PI-3-kinase-related k... 33 6.4
protein update 2009. 5.12
PSORT

psg: 0.56 gvh: 0.37 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: endoplasmic reticulum

>> prediction for CFC530 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC530Z
3' end seq.
>CFC530Z.Seq
----------TGGAATCATCCACTCCCTTTTCTCAAAAATTGATGTCAAACGAACAACAA
CAACAACAACAACCACAAAATTTCTCTTTCCCACAAAAACAACAGCAAGCTGTTGACCTC
AATGAATTCTTTGGTTTAAATTCAGTTGGGGGTGGTGGTCATTTCAAAGCATGCTTTTCA
CCAGATAACAGTTTCAATTTGTACAATGATCTTTCACCANAGGCTAAATCTTGTTTCAAA
ATTTTCGCTAAAAAGTGTAAACCAACCACCGAACATGAAGTCTTTAACAAGGTTATGAAT
TTGTTGAACAATTTAACTCTTGAAGAAATTGATTTGATTATCAAGTCCGTTTCACGTATT
GAAAAGTATGATACGCTCATTGCAAAGGTCTTTGCCACCGAACTTGATGTAGCTAACTTC
CCAAGTATCAATGCCAAGCTTTTGCTCCAAAATTTATTGGTCGAAATTATTGACCAAGAC
AGAAAATTGGTCTACCACCTCTTCCAACTAGATACTGATCATATTCACTCACTCAAAAAT
AAATGTTCAATCTTATCAATCTCTACCCCAGCCAGTGATTCCCTTAATTTCTCTGCTTTA
CTTCAAGAAGATAGTAATAACAATAACAATAACAATAACAATAACAAAAACAAATAAAAA
AACACCAACTAATCAAATAACAATTAAAACAACTATAATTATTATTTAAAA
Length of 3' end seq. 701
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -