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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC529
Library CF
(Link to library)
Clone ID CFC529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16243-1
Original site URL
Representative seq. ID CFC529E
(Link to Original site)
Representative DNA sequence 
>CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGC
CGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGA
TGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGA
TTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAG
TCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATT
GGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCAT
TATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCAC
TAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTG
TAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGG
TCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCG
TCGTAAAGGTAAATATGGTGTAATCTCTATGT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTED
GKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERL
GLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSC
KVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISM
Translated Amino Acid sequence (All Frames) 
Frame A:
iynitphn**nviqfkn*nyfsslkhwtnfriksnfwis*irr*ycncctisysnl*s*k
rsiqrdstr*fistsy*tyyqsyqirskinwrccygssitkiitrcnrs*schiisrftk
gstmlysqqtmfirftsncqlcsssqsrfl*hwfsrrcrinefksngmgwwfqrgcprgs
nh*wllqhygsnl*kcrrafwchqkrpr*ilckftqegrcrpksr*i*r*nrsshrkdrg
wqnhrrr*rrryp*enhrcrfgqiktsfqrgwynhrw*l*sne*wcrrlfsyekkyrrki
gsqg*igfrsfcccrcrtihygywssrcnssrlktswshh*ryrrf*nq*sfcfssilql
*gfgfgyeqs*skwlwyrfrssircywcpsngyhfkritss*r*iwcnly


Frame B:
YIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKAKR
GAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGLPK
EVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQEDP
IISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKTED
GKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAERL
GLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFYSC
KVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGKYGVISM


Frame C:
i*yytp*likchsiqelklflvt*aldqf*nqiqlldqlnqemil*llhhfvqqfvklke
ehskrqhqmiy*hqllnilsklpn*iqn*lemllweqyyqdhhkvqpklelphy*qvyqr
kyhviqstdnvhqvykqlpivqqqskqvsmtlv*qav*nq*v*iqwhgmvvstrlpkriq
slvvvttlwvkplkmsqsvlvspektkmnsl*ihtrrqvppkkqvnltmksfqsp*rprm
akpsssiktkvsvrkpplqiwpn*nqlskrvvqpplvtlvk*vmvpplv*l*kevppkdw
vsrlnwfs*llllsvsnhplwvlvqplqfqpp*nklvsplkistflksmkllllkhftvv
rfwvwi*tkliqmalvsl*vih*vllvpvkwlpfqenyivvkvnmv*slc
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/                       2442   0.0
CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/                       2442   0.0
SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/                       2434   0.0
CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/                       2434   0.0
SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/                       2430   0.0
AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/                       2422   0.0
VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/                       2420   0.0
AFE219 (AFE219Q) /CSM/AF/AFE2-A/AFE219Q.Seq.d/                       2420   0.0
AFG267 (AFG267Q) /CSM/AF/AFG2-C/AFG267Q.Seq.d/                       2415   0.0
CFA801 (CFA801Q) /CSM/CF/CFA8-A/CFA801Q.Seq.d/                       2403   0.0
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  2216   0.0    1
CA917334|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence.    40   3e-18  7
CA858588|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence.    40   3e-14  6
CB005315|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence.    60   2e-13  5
AU089542|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09.    44   1e-12  5
CB008288|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence.    60   1e-11  4
CF213585|CF213585.1 CGF1000794_F07 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IF_F07 5', mRNA sequence.    60   6e-10  3
BM065622|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence.    68   1e-09  3
CB893643|CB893643.1 EST646435 HOGA Medicago truncatula cDNA clone HOGA-28F15, mRNA sequence.    40   5e-09  5
CD007738|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence.    60   3e-08  2
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_75(AC116986|pid:none) Dictyostelium discoideum chromoso...   758   0.0
X75329_1(X75329|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket...   416   e-115
AM474896_9(AM474896|pid:none) Vitis vinifera contig VV79X001698....   415   e-114
S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu...   414   e-114
AB333797_1(AB333797|pid:none) Glycine max mRNA for peroxisomal 3...   410   e-113
T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur...   409   e-112
(Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal;  ...   409   e-112
BT070433_1(BT070433|pid:none) Picea sitchensis clone WS02729_F15...   407   e-112
AX025481_1(AX025481|pid:none) Sequence 7 from Patent WO0032789.       406   e-112
EU964831_1(EU964831|pid:none) Zea mays clone 281881 3-ketoacyl-C...   405   e-111
protein update 2009. 6.30
PSORT 

 psg: 0.61  gvh: 0.40  alm: 0.28  top: 0.33  tms: 0.07  mit: 0.35  mip: 0.05
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFC529 is nuc
5' end seq. ID CFC529F
5' end seq. 
>CFC529F.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGC
CG----------
Length of 5' end seq. 662
3' end seq. ID CFC529Z
3' end seq. 
>CFC529Z.Seq
----------AATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTC
TGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAAT
CGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGG
TATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGG
TGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGT
TATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTT
TGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGC
CGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGC
TTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAA
TCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAAT
GGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTCTATGT
Length of 3' end seq. 649
Connected seq. ID CFC529P
Connected seq. 
>CFC529P.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGC
CG----------AATGTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTC
TCTGTAAATTCACACAAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAA
ATCGTTCCAGTCACCGTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAA
GGTATCCGTGAGAAAACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAG
GGTGGTACAACCACCGCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTA
GTTATGAAAAGAAGTACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCT
TTTGCTGCTGTCGGTGTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCA
GCCGCCTTAAAACAAGCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAA
GCTTTTGCTTCTCAAGCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTT
AATCCAAATGGCTCTGGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAA
ATGGCTACCATTTCAAGAGAATTACATCGTCGTAAAGGTAAATATGGTGTAATCTCTATG
T
Length of connected seq. 1311
Full length Seq ID CFC529E
Full length Seq. 
>CFC529E.Seq
ATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGAAACTAT
TTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATCAGTTAA
ATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGCTAAAAG
AGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACATATTAT
CAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGTATTACC
AAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTTACCAAA
GGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAATTGCCAA
TTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGTAGAATC
AATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGAGGATCC
AATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTT
TGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGC
CGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGA
TGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGA
TTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAG
TCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATT
GGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCAT
TATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCAC
TAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTG
TAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGG
TCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCG
TCGTAAAGGTAAATATGGTGTAATCTCTATGT
Length of full length seq. 1232