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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC523
Library CF
(Link to library)
Clone ID CFC523
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10675-1
Original site URL
Representative seq. ID CFC523P
(Link to Original site)
Representative DNA sequence 
>CFC523 (CFC523Q) /CSM/CF/CFC5-A/CFC523Q.Seq.d/
CACTGTTGGCCTACTGGNAATATTTTTTTTTTTACCTCCCTATTACTTTTTTTCATAATT
ATTTGTAATATTCATATTAATAAATAAATTTAAATTTTTTATTTTTTTTAAATTTTTTCA
CAATAATAAAAAAAGAAANGGCANCAAAGGGATTAAATATGGATGATTTANATCTTTTAT
TANCAGATTNGGGAAGACCAAAGAGTTCAATAAAAGTAACAGCAACTGTTCAAACAACCG
XXXXXXXXXXAACCACAACCATATAAAGTTACAGCAACTAATTCACAACCAAGTAGTGAT
GACCTTGATGAATTATTAAAAGGTNTTAGTCCATCCACCACTACTACCACTACTGTACCA
CCACCAGTTCAACGTGATCAACATCAACATCATCATCAACATCAACATCATCATCATCAT
AATCCAAATCATAATCAAACTCAAACTGTAACAACACAAATTAATATTGGTAGAACAAAT
ACTCCAAACAATAACAATAACAATAATACAAATTCNCCAAAAGTTGTACATGGTGATGAT
TTANATAATTTATTAAATAATTTAACATCNCAAGTTAAAGATATTGATTCAACAGGACCA
ACATCACGTGGTACATGTGGTGGTTGTCGTAAACCAATCTTTGGTGAAACTATTCAAGCA
ATGGGTAAATTCTATCATCCAGAACATTTTGTTTGCGCNTTCTGTATGAATCCATTAGCT
GGTGGTTCTTANACCGCTAATAATGGTAAACCATATTGTAAAGGTTGTCATAATAAATTA
TTTGCTTAAAATAAAATAAAATAAAAAAAAATAAAAAAAAAATCAACAATAAATGGTAAT
TCCCTCAAAAATAAATATATATATAAATAAATTAAATGTATCAAATAAAATTAATAAATA
AAAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
llaywxyfffylpitffhnyl*ysy**INLNFLFFLNFFTIIKKEXAXKGLNMDDLXLLL
XDXGRPKSSIKVTATVQTT---

---PQPYKVTATNSQPSSDDLDELLKGXSPSTTTTTTVPPPVQRDQHQHHHQHQHHHHHN
PNHNQTQTVTTQINIGRTNTPNNNNNNNTNSPKVVHGDDLXNLLNNLTSQVKDIDSTGPT
SRGTCGGCRKPIFGETIQAMGKFYHPEHFVCAFCMNPLAGGSXTANNGKPYCKGCHNKLF
A*nkik*kkikkkstingnslknkyiyk*ikcik*n**ikn
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgniffftslllffiiicnihink*i*ifyff*ifsq**kkkxxqrd*iwmixify
xqixedqrvq*k*qqlfkqp---

---nhnhiklqqlihnqvvmtlmny*kvlvhppllpllyhhqfnvininiiininiiiii
iqiiiklkl*qhklilveqilqtititiiqixqklymvmixiiy*ii*hxklkiliqqdq
hhvvhvvvvvnqslvklfkqwvnsiiqnilfaxsv*ih*lvvlxplimvnhivkvviiny
llkik*nkkk*kknqq*mvipskiniyinklnvsnkink*k

Frame B:
tvgllxiffflppyyffs*lfvifilinkfkffiffkffhnnkkrxgxkgikyg*fxsfi
xrxgktkefnksnsncsnn---

---ttti*sysn*fttk***p**iikrx*sihhyyhyctttsst*ststssststssss*
sks*snsncnntn*yw*nkyskq*q*q*ykfxksctw**fx*fik*fnixs*ry*fnrtn
itwymwwls*tnlw*nyssng*ilssrtfclrxlyesiswwflxr**w*til*rls**ii
clk*nkikknkkkinnkw*fpqk*iyi*in*myqiklinkk

Frame C:
llaywxyfffylpitffhnyl*ysy**INLNFLFFLNFFTIIKKEXAXKGLNMDDLXLLL
XDXGRPKSSIKVTATVQTT---

---PQPYKVTATNSQPSSDDLDELLKGXSPSTTTTTTVPPPVQRDQHQHHHQHQHHHHHN
PNHNQTQTVTTQINIGRTNTPNNNNNNNTNSPKVVHGDDLXNLLNNLTSQVKDIDSTGPT
SRGTCGGCRKPIFGETIQAMGKFYHPEHFVCAFCMNPLAGGSXTANNGKPYCKGCHNKLF
A*nkik*kkikkkstingnslknkyiyk*ikcik*n**ikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC523 (CFC523Q) /CSM/CF/CFC5-A/CFC523Q.Seq.d/                        664   0.0
AFE650 (AFE650Q) /CSM/AF/AFE6-C/AFE650Q.Seq.d/                        331   1e-89
SFD689 (SFD689Q) /CSM/SF/SFD6-D/SFD689Q.Seq.d/                        323   3e-87
AFK735 (AFK735Q) /CSM/AF/AFK7-B/AFK735Q.Seq.d/                        303   2e-81
AFG764 (AFG764Q) /CSM/AF/AFG7-C/AFG764Q.Seq.d/                        270   3e-71
AFE115 (AFE115Q) /CSM/AF/AFE1-A/AFE115Q.Seq.d/                        268   1e-70
AHC110 (AHC110Q) /CSM/AH/AHC1-A/AHC110Q.Seq.d/                        264   2e-69
AFN592 (AFN592Q) /CSM/AF/AFN5-D/AFN592Q.Seq.d/                        262   8e-69
AFO493 (AFO493Q) /CSM/AF/AFO4-D/AFO493Q.Seq.d/                        248   1e-64
VSE226 (VSE226Q) /CSM/VS/VSE2-B/VSE226Q.Seq.d/                        210   3e-53
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC123513|AC123513.1 Dictyostelium discoideum chromosome 2 map 2779865-2840915 strain AX4, *** SEQUENCING IN PROGRESS ***.   482   0.0    10
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.   482   0.0    10
AJ002382|AJ002382.1 Dictyostelium discoideum mRNA for paxillin-like protein, PaxB.   482   0.0    4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   1e-09  17
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           46   3e-09  20
AL049181|AL049181.4 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P4.    38   1e-07  13
AP005911|AP005911.3 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0040C06.    40   3e-07  5
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44   6e-07  12
AC114263|AC114263.2 Dictyostelium discoideum chromosome 2 map 215673-367476 strain AX4, complete sequence.    40   8e-07  14
AC137003|AC137003.3 Oryza sativa (japonica cultivar-group) Chromosome 5 BAC clone OSJNBb0069G11, complete sequence.    40   1e-06  7
dna update 2004. 5.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ002382_1(AJ002382|pid:none) Dictyostelium discoideum mRNA for ...   174   5e-42
BX950216_4(BX950216|pid:none) Zebrafish DNA sequence from clone ...    79   2e-13
AF317890_1(AF317890|pid:none) Xenopus laevis paxillin mRNA, comp...    79   3e-13
BC167913_1(BC167913|pid:none) Xenopus tropicalis cDNA clone MGC:...    79   3e-13
AB027499_1(AB027499|pid:none) Xenopus laevis mRNA for paxillin, ...    79   3e-13
(P49024) RecName: Full=Paxillin;  &B55933(B55933) &L30099_1(L300...    79   3e-13
BT059482_1(BT059482|pid:none) Salmo salar clone ssal-rgf-529-375...    78   5e-13
BC144410_1(BC144410|pid:none) Homo sapiens paxillin, mRNA (cDNA ...    76   1e-12
AY641810_1(AY641810|pid:none) Rattus norvegicus myocardial ische...    76   1e-12
BC003298_1(BC003298|pid:none) Mus musculus paxillin, mRNA (cDNA ...    76   1e-12
protein update 2009. 5.12
PSORT 

 psg: 0.95  gvh: 0.46  alm: 0.42  top: 0.47  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for CFC523 is cyt
5' end seq. ID CFC523F
5' end seq. 
>CFC523F.Seq
CACTGTTGGCCTACTGGNAATATTTTTTTTTTTACCTCCCTATTACTTTTTTTCATAATT
ATTTGTAATATTCATATTAATAAATAAATTTAAATTTTTTATTTTTTTTAAATTTTTTCA
CAATAATAAAAAAAGAAANGGCANCAAAGGGATTAAATATGGATGATTTANATCTTTTAT
TANCAGATTNGGGAAGACCAAAGAGTTCAATAAAAGTAACAGCAACTGTTCAAACAACCG
----------
Length of 5' end seq. 240
3' end seq. ID CFC523Z
3' end seq. 
>CFC523Z.Seq
----------AACCACAACCATATAAAGTTACAGCAACTAATTCACAACCAAGTAGTGAT
GACCTTGATGAATTATTAAAAGGTNTTAGTCCATCCACCACTACTACCACTACTGTACCA
CCACCAGTTCAACGTGATCAACATCAACATCATCATCAACATCAACATCATCATCATCAT
AATCCAAATCATAATCAAACTCAAACTGTAACAACACAAATTAATATTGGTAGAACAAAT
ACTCCAAACAATAACAATAACAATAATACAAATTCNCCAAAAGTTGTACATGGTGATGAT
TTANATAATTTATTAAATAATTTAACATCNCAAGTTAAAGATATTGATTCAACAGGACCA
ACATCACGTGGTACATGTGGTGGTTGTCGTAAACCAATCTTTGGTGAAACTATTCAAGCA
ATGGGTAAATTCTATCATCCAGAACATTTTGTTTGCGCNTTCTGTATGAATCCATTAGCT
GGTGGTTCTTANACCGCTAATAATGGTAAACCATATTGTAAAGGTTGTCATAATAAATTA
TTTGCTTAAAATAAAATAAAATAAAAAAAAATAAAAAAAAAATCAACAATAAATGGTAAT
TCCCTCAAAAATAAATATATATATAAATAAATTAAATGTATCAAATAAAATTAATAAATA
AAAAAT
Length of 3' end seq. 656
Connected seq. ID CFC523P
Connected seq. 
>CFC523P.Seq
CACTGTTGGCCTACTGGNAATATTTTTTTTTTTACCTCCCTATTACTTTTTTTCATAATT
ATTTGTAATATTCATATTAATAAATAAATTTAAATTTTTTATTTTTTTTAAATTTTTTCA
CAATAATAAAAAAAGAAANGGCANCAAAGGGATTAAATATGGATGATTTANATCTTTTAT
TANCAGATTNGGGAAGACCAAAGAGTTCAATAAAAGTAACAGCAACTGTTCAAACAACCG
----------AACCACAACCATATAAAGTTACAGCAACTAATTCACAACCAAGTAGTGAT
GACCTTGATGAATTATTAAAAGGTNTTAGTCCATCCACCACTACTACCACTACTGTACCA
CCACCAGTTCAACGTGATCAACATCAACATCATCATCAACATCAACATCATCATCATCAT
AATCCAAATCATAATCAAACTCAAACTGTAACAACACAAATTAATATTGGTAGAACAAAT
ACTCCAAACAATAACAATAACAATAATACAAATTCNCCAAAAGTTGTACATGGTGATGAT
TTANATAATTTATTAAATAATTTAACATCNCAAGTTAAAGATATTGATTCAACAGGACCA
ACATCACGTGGTACATGTGGTGGTTGTCGTAAACCAATCTTTGGTGAAACTATTCAAGCA
ATGGGTAAATTCTATCATCCAGAACATTTTGTTTGCGCNTTCTGTATGAATCCATTAGCT
GGTGGTTCTTANACCGCTAATAATGGTAAACCATATTGTAAAGGTTGTCATAATAAATTA
TTTGCTTAAAATAAAATAAAATAAAAAAAAATAAAAAAAAAATCAACAATAAATGGTAAT
TCCCTCAAAAATAAATATATATATAAATAAATTAAATGTATCAAATAAAATTAATAAATA
AAAAAT
Length of connected seq. 896
Full length Seq ID -
Full length Seq. -
Length of full length seq. -