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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC509
Library CF
(Link to library)
Clone ID CFC509
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15333-1
Original site URL
Representative seq. ID CFC509P
(Link to Original site)
Representative DNA sequence 
>CFC509 (CFC509Q) /CSM/CF/CFC5-A/CFC509Q.Seq.d/
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTGTTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAGXXXXXXXXXXTTTG
GTAATGTAGGGTTACTTTGCCGCCAAATTCTTTGAACAAGCTGGTGCTAAAGTTATTGCC
GTCGCCGAACACAATGGTGCCGTCTACAACGCCGATGGTCTCAACATTGATGCCCTCAAC
AAATATAAACTCCAACACGGTACTTTCATTGATTTCCCAGGTGCCACCAACATTGTCGAC
TCTGTCAAAGCCTTAGAGATCCCATGTGATATCTTAATCCCAGCTGCCCTCGAAAAACAA
ATCCACATTGGTAACGTCGCCGATATTCAAGCTAAATTAATTGGTGAAGCTGCCAACGGT
CCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCAGAT
CTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTTTCT
CACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTATTA
GAATTTGTTGAATCAGCCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATCATC
CATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCGTGCAAAATGCT
TGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACCGTTCTGCCGCTTTA
TACAATGCTATCATGAAGATTAAAGCTGTCTATAATCATCGGTAATGTCTTCTCTTAAAT
ATTTTAAAAAAACCC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifvlyi*IIMQSLARLSRTSLVQKGLVPQTIKNCSSVSQAEIDNEPRFLECFKTFFDKAA
GLTNLKPGVLNNMKECNVALRVEFPIKNEHGDVDIIAGYRAQHSHHRLPCKGGIRFSEEV
DLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIG
PGVDVPAPDMGTGEQ---

---FGNVGLLCRQIL*tswc*sycrrrtqwcrlqrrwsqh*cpqqi*tptryfh*fprch
qhcrlcqslrdpm*ylnpscprktnphw*rrryss*inw*scqrsndptc*pnppq*rsc
hhsrsplkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*isrqqeiirs*k
klnhpwc**nryrsfrsrryrakclc*nqkdck*keh*lpfcrfiqcyhed*scl*ssvm
sslkyfkkt
Translated Amino Acid sequence (All Frames) 
Frame A:
ifvlyi*IIMQSLARLSRTSLVQKGLVPQTIKNCSSVSQAEIDNEPRFLECFKTFFDKAA
GLTNLKPGVLNNMKECNVALRVEFPIKNEHGDVDIIAGYRAQHSHHRLPCKGGIRFSEEV
DLQEVMALASLMTYKCAVVDVPFGGAKGGVRIDPKKYTVAQREKITRAYTLLLCQKNFIG
PGVDVPAPDMGTGEQ---

---FGNVGLLCRQIL*tswc*sycrrrtqwcrlqrrwsqh*cpqqi*tptryfh*fprch
qhcrlcqslrdpm*ylnpscprktnphw*rrryss*inw*scqrsndptc*pnppq*rsc
hhsrsplkcwwchciil*mvkesfsrsfrsfeqemgrilkeiiiric*isrqqeiirs*k
klnhpwc**nryrsfrsrryrakclc*nqkdck*keh*lpfcrfiqcyhed*scl*ssvm
sslkyfkkt

Frame B:
flyyifk**cnhlhvylvplwfkrvlfhkplktvhqfhklklimnqdf*nvsklslikql
v*pi*nqvf*ii*knvmllsvlnsqsrmnmvmlillqvivhnihtivyhakvvfvsvkk*
iskklwp*lh**linvlssmfhlvvlkvvsvstqrntlspnvkrslvptlssyvkrissd
qvsmyqlqiwvqvnk---

---lvm*gyfaakffeqagakviavaehngavynadglnidalnkyklqhgtfidfpgat
nivdsvkaleipcdilipaalekqihignvadiqakligeaangpmtpradqillnrghv
iipdlllnaggvtvsyfewlknlshvrfgrlnkkweesskklllefvesavnkklseaer
sliihgadeidivrsgledtvqnacaetrktanekntdyrsaalynaimkikavynhr*c
lllnilkkp

Frame C:
fciiylnnnaitctfisylfgskgscstnh*klfisfts*n***tkifrmfqnfl**ssw
fnqfktrcfk*yerm*ccspc*ipnqe*tw*c*yycrlscttftpsftmqrwysfq*rsr
sprsyglsfiddl*mccrrcsiwwc*rwcpyrpkeihcrpt*kdhsclhsplmskefhrt
rcrctssrygyr*t---

---w*crvtlppnslnklvlkllpspntmvpsttpmvstlmpstninsntvlslisqvpp
tlstlskp*rshvis*sqlpsknkstlvtspifkln*lvklptvq*phvltksssievms
sfqiss*mlvvslyhtlng*rifltfvsvv*trngknpqrnyy*nllnqpstrnyqklke
a*ssmvlmksisfvqvskipckmlvlkperlqmkrtlitvlplytmls*rlklsiiignv
fs*if*kn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC509 (CFC509Q) /CSM/CF/CFC5-A/CFC509Q.Seq.d/                       2567   0.0
VFI815 (VFI815Q) /CSM/VF/VFI8-A/VFI815Q.Seq.d/                       1409   0.0
SFG811 (SFG811Q) /CSM/SF/SFG8-A/SFG811Q.Seq.d/                       1407   0.0
SFF671 (SFF671Q) /CSM/SF/SFF6-C/SFF671Q.Seq.d/                       1407   0.0
SFD163 (SFD163Q) /CSM/SF/SFD1-C/SFD163Q.Seq.d/                       1403   0.0
AFC621 (AFC621Q) /CSM/AF/AFC6-A/AFC621Q.Seq.d/                       1403   0.0
AFG496 (AFG496Q) /CSM/AF/AFG4-D/AFG496Q.Seq.d/                       1400   0.0
VFF884 (VFF884Q) /CSM/VF/VFF8-D/VFF884Q.Seq.d/                       1392   0.0
SFJ586 (SFJ586Q) /CSM/SF/SFJ5-D/SFJ586Q.Seq.d/                       1392   0.0
CFH153 (CFH153Q) /CSM/CF/CFH1-C/CFH153Q.Seq.d/                       1392   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CD420727|CD420727.1 ku90g10.y1 Strongyloides ratti PA female naive pAMP1 v1PROTEIN. [1] ;, mRNA sequence.    74   1e-18  3
CD525857|CD525857.1 kw26g12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   4e-18  3
BI323216|BI323216.1 kt63a12.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
BG894101|BG894101.1 kt18c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
BG894052|BG894052.1 kt17e07.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
BM879657|BM879657.1 kt98c05.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
CD525630|CD525630.1 kw16f01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  2
CD523875|CD523875.1 kw18a07.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
BQ091241|BQ091241.1 ku14g05.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
CB098562|CB098562.1 ku55a11.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q23621 Q23621 ZK829.4 PROTEIN. [1] ;, mRNA sequence.    70   1e-17  3
dna update 2004. 5.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KB7) RecName: Full=Glutamate dehydrogenase, mitochondrial;  ...   404   e-111
CP000968_87(CP000968|pid:none) Candidatus Korarchaeum cryptofilu...   199   1e-49
CP000482_1684(CP000482|pid:none) Pelobacter propionicus DSM 2379...   195   3e-48
CP000159_2202(CP000159|pid:none) Salinibacter ruber DSM 13855, c...   194   6e-48
CP000760_126(CP000760|pid:none) Ochrobactrum anthropi ATCC 49188...   189   2e-46
BC103336_1(BC103336|pid:none) Bos taurus glutamate dehydrogenase...   189   2e-46
CP001034_1469(CP001034|pid:none) Natranaerobius thermophilus JW/...   188   4e-46
AK089152_1(AK089152|pid:none) Mus musculus 10 days neonate olfac...   187   7e-46
(P26443) RecName: Full=Glutamate dehydrogenase 1, mitochondrial;...   187   7e-46
BX005174_8(BX005174|pid:none) Zebrafish DNA sequence from clone ...   187   9e-46
protein update 2009. 5.12
PSORT 

 psg: 0.73  gvh: 0.45  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CFC509 is mit
5' end seq. ID CFC509F
5' end seq. 
>CFC509F.Seq
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTGTTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAG----------
Length of 5' end seq. 586
3' end seq. ID CFC509Z
3' end seq. 
>CFC509Z.Seq
----------TTTGGTAATGTAGGGTTACTTTGCCGCCAAATTCTTTGAACAAGCTGGTG
CTAAAGTTATTGCCGTCGCCGAACACAATGGTGCCGTCTACAACGCCGATGGTCTCAACA
TTGATGCCCTCAACAAATATAAACTCCAACACGGTACTTTCATTGATTTCCCAGGTGCCA
CCAACATTGTCGACTCTGTCAAAGCCTTAGAGATCCCATGTGATATCTTAATCCCAGCTG
CCCTCGAAAAACAAATCCACATTGGTAACGTCGCCGATATTCAAGCTAAATTAATTGGTG
AAGCTGCCAACGGTCCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATG
TCATCATTCCAGATCTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGT
TAAAGAATCTTTCTCACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAA
AGAAATTATTATTAGAATTTGTTGAATCAGCCGTCAACAAGAAATTATCAGAAGCTGAAA
GAAGCTTAATCATCCATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATA
CCGTGCAAAATGCTTGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACC
GTTCTGCCGCTTTATACAATGCTATCATGAAGATTAAAGCTGTCTATAATCATCGGTAAT
GTCTTCTCTTAAATATTTTAAAAAAACCC
Length of 3' end seq. 739
Connected seq. ID CFC509P
Connected seq. 
>CFC509P.Seq
ATTTTTGTATTATATATTTAAATAATAATGCAATCACTTGCACGTTTATCTCGTACCTCT
TTGGTTCAAAAGGGTCTTGTTCCACAAACCATTAAAAACTGTTCATCAGTTTCACAAGCT
GAAATTGATAATGAACCAAGATTTTTAGAATGTTTCAAAACTTTCTTTGATAAAGCAGCT
GGTTTAACCAATTTAAAACCAGGTGTTTTAAATAATATGAAAGAATGTAATGTTGCTCTC
CGTGTTGAATTCCCAATCAAGAATGAACATGGTGATGTTGATATTATTGCAGGTTATCGT
GCACAACATTCACACCATCGTTTACCATGCAAAGGTGGTATTCGTTTCAGTGAAGAAGTA
GATCTCCAAGAAGTTATGGCCTTAGCTTCATTGATGACTTATAAATGTGCTGTCGTCGAT
GTTCCATTTGGTGGTGCTAAAGGTGGTGTCCGTATCGACCCAAAGAAATACACTGTCGCC
CAACGTGAAAAGATCACTCGTGCCTACACTCTCCTCTTATGTCAAAAGAATTTCATCGGA
CCAGGTGTCGATGTACCAGCTCCAGATATGGGTACAGGTGAACAAG----------TTTG
GTAATGTAGGGTTACTTTGCCGCCAAATTCTTTGAACAAGCTGGTGCTAAAGTTATTGCC
GTCGCCGAACACAATGGTGCCGTCTACAACGCCGATGGTCTCAACATTGATGCCCTCAAC
AAATATAAACTCCAACACGGTACTTTCATTGATTTCCCAGGTGCCACCAACATTGTCGAC
TCTGTCAAAGCCTTAGAGATCCCATGTGATATCTTAATCCCAGCTGCCCTCGAAAAACAA
ATCCACATTGGTAACGTCGCCGATATTCAAGCTAAATTAATTGGTGAAGCTGCCAACGGT
CCAATGACCCCACGTGCTGACCAAATCCTCCTCAATAGAGGTCATGTCATCATTCCAGAT
CTCCTCTTAAATGCTGGTGGTGTCACTGTATCATACTTTGAATGGTTAAAGAATCTTTCT
CACGTTCGTTTCGGTCGTTTGAACAAGAAATGGGAAGAATCCTCAAAGAAATTATTATTA
GAATTTGTTGAATCAGCCGTCAACAAGAAATTATCAGAAGCTGAAAGAAGCTTAATCATC
CATGGTGCTGATGAAATCGATATCGTTCGTTCAGGTCTCGAAGATACCGTGCAAAATGCT
TGTGCTGAAACCAGAAAGACTGCAAATGAAAAGAACACTGATTACCGTTCTGCCGCTTTA
TACAATGCTATCATGAAGATTAAAGCTGTCTATAATCATCGGTAATGTCTTCTCTTAAAT
ATTTTAAAAAAACCC
Length of connected seq. 1325
Full length Seq ID -
Full length Seq. -
Length of full length seq. -