CFC494
Library CF
(Link to library)
Clone ID CFC494
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFC494P
(Link to Original site)
Representative DNA sequence
>CFC494 (CFC494Q) /CSM/CF/CFC4-D/CFC494Q.Seq.d/
ATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGA
TTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAA
ACCACATAGAGATTTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGG
TTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTC
TTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAG
AATGAGATGTCCAGAAGGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACC
ACATCATGACGGTTGTGGTAATATTCAATGTCCATGGGGCCACTATTGTGTCAATGAACA
TGGTAAATGCAGATGTGTACCACACAGACCACCACCACGTCCACCAGTTGACCAATGCCG
TAATCAACATTGTCCACATGGTTATTCATGTCGTGTCATTAAAGGTTGTGCCACTTGTGT
CAGAGATGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAGXXXXXXXXXX
ATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAATA
TCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCA
GCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTT
GTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTT
GTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCAT
CAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTA
GATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAA
CCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAA
CAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCG
ATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTG
AACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCAT
CCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTG
CAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
CCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPNTTTCESLG
CEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGFYCEEQGGSACCVP
HHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSCRVIKGCATCV
RDARPPHNLCRGFGCP---

---LCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFP
QLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCT
NTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAAS
SADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
SAASSESSESSSATS*ik


Translated Amino Acid sequence (All Frames)
Frame A:
mlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rfctisftkynhm*iir
l*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qnemsrrill*rtrw*cmlrt
ts*rlw*ysmsmgpllcq*tw*mqmcttqttttsts*pmp*stlstwlfmsch*rlchlc
qrcpstt*plswfwls---

---iyvikpvvhtiinvkplapis*nvhqrmtnvngivvhqvpaasivetvhtvlpimys
hnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlvqsyhqhvitle*fvfkyqaiv
pildshvahliqfvfihqllllqplqqlhqlsqlqplqllqvqqlvelqlvvqllivvll
pqpivalpphhhqavllqvplqvnhqvaplqvvlhpllqvalhplpqvvlhhhqlqvqlh
hqlqaqkaqkahqplhk*

Frame B:
CCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRDFVPYHSPNTTTCESLG
CEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCPEGFYCEEQGGSACCVP
HHDGCGNIQCPWGHYCVNEHGKCRCVPHRPPPRPPVDQCRNQHCPHGYSCRVIKGCATCV
RDARPPHNLCRGFGCP---

---fm*snplstrlsm*nh*hqyremftke*rm*maslstrfqllq**krstlscq*cip
ttl*sysmsn*fll*nd*r*snly*skttgttttllnlcraiism*srwndlysstkqly
qy*ipmlpissnlyssinyccfnhcnncincrnynlcnycrynnwwnynwwfnf***ccf
lsr**rcllitikqccfkcrfk*tik*rrfk*csilcfk*rsilclk*csiiisfkfsci
iscklrklrklishfink

Frame C:
vvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhieilyhiihqiqphvnh*v
vkqevwnvnglnhhhvmellvaqefqdvlvimvavinvte*dvqkdsivknkvvvhaayh
imtvvvifnvhgativsmnmvnadvyhtdhhhvhqltnavinivhmvihvvslkvvplvs
empvhhitfvvvlvvq---

---LCNQTRCPHDYQCETISTNIVKCSPKNDECKWHRCPPGSSCFNSRNGPHCLANNVFP
QLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCAELSSACNHVGMICIQVPSNCT
NTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATTAGTTTGGTTTGGSTSDSSAAS
SADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASSSAPSSASSSAPSSSASSSAAS
SAASSESSESSSATS*ik

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC494 (CFC494Q) /CSM/CF/CFC4-D/CFC494Q.Seq.d/ 2650 0.0
SFK752 (SFK752Q) /CSM/SF/SFK7-C/SFK752Q.Seq.d/ 1520 0.0
SFI829 (SFI829Q) /CSM/SF/SFI8-B/SFI829Q.Seq.d/ 1520 0.0
SFI203 (SFI203Q) /CSM/SF/SFI2-A/SFI203Q.Seq.d/ 1520 0.0
SFF631 (SFF631Q) /CSM/SF/SFF6-B/SFF631Q.Seq.d/ 1520 0.0
SFE663 (SFE663Q) /CSM/SF/SFE6-C/SFE663Q.Seq.d/ 1520 0.0
SFD672 (SFD672Q) /CSM/SF/SFD6-C/SFD672Q.Seq.d/ 1520 0.0
SFD192 (SFD192Q) /CSM/SF/SFD1-D/SFD192Q.Seq.d/ 1520 0.0
CFI758 (CFI758Q) /CSM/CF/CFI7-C/CFI758Q.Seq.d/ 1520 0.0
CFI753 (CFI753Q) /CSM/CF/CFI7-C/CFI753Q.Seq.d/ 1520 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds. 1520 0.0 5
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read. 190 4e-44 1
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds. 64 6e-06 1
AC099379|AC099379.5 Rattus norvegicus clone CH230-42H5, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 42 0.80 6
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A). 36 0.93 2
BX284669|BX284669.11 Zebrafish DNA sequence from clone CH211-280E18 in linkage group 20. 44 3.2 9
CN187496|CN187496.1 UCRCS05_0004I21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0004I21, mRNA sequence. 34 3.3 3
AC125101|AC125101.3 Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence. 40 4.4 9
AG155086|AG155086.1 Pan troglodytes DNA, clone: RP43-019E19.TJ. 38 5.2 2
BW443818|BW443818.1 Ciona intestinalis cDNA, clone:cijv414e03, 5'end, single read. 44 5.5 1
dna update 2004. 5.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 434 e-120
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 431 e-119
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 150 1e-34
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 100 2e-19
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 72 1e-17
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 84 9e-15
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 83 2e-14
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 67 1e-12
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 54 1e-10
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso... 69 4e-10
protein update 2009. 5.12
PSORT

psg: 0.58 gvh: 0.28 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for CFC494 is nuc

5' end seq. ID CFC494F
5' end seq.
>CFC494F.Seq
ATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGA
TTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAA
ACCACATAGAGATTTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGG
TTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTC
TTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAG
AATGAGATGTCCAGAAGGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACC
ACATCATGACGGTTGTGGTAATATTCAATGTCCATGGGGCCACTATTGTGTCAATGAACA
TGGTAAATGCAGATGTGTACCACACAGACCACCACCACGTCCACCAGTTGACCAATGCCG
TAATCAACATTGTCCACATGGTTATTCATGTCGTGTCATTAAAGGTTGTGCCACTTGTGT
CAGAGATGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAG----------
Length of 5' end seq. 590
3' end seq. ID CFC494Z
3' end seq.
>CFC494Z.Seq
----------ATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATT
AGCACCAATATCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCA
CCAGGTTCCAGCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTC
CCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGT
AATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCA
GAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGT
ACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACT
GCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACT
GCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCT
TCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCC
GCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGT
AGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCA
TCATCAGCTGCAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
Length of 3' end seq. 767
Connected seq. ID CFC494P
Connected seq.
>CFC494P.Seq
ATGTTGTGGTAAGAAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGA
TTTATCATGTGCTAAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAA
ACCACATAGAGATTTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGG
TTGTGAAGCAAGAGGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTC
TTGTTGCCCAAGAATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAG
AATGAGATGTCCAGAAGGATTCTATTGTGAAGAACAAGGTGGTAGTGCATGCTGCGTACC
ACATCATGACGGTTGTGGTAATATTCAATGTCCATGGGGCCACTATTGTGTCAATGAACA
TGGTAAATGCAGATGTGTACCACACAGACCACCACCACGTCCACCAGTTGACCAATGCCG
TAATCAACATTGTCCACATGGTTATTCATGTCGTGTCATTAAAGGTTGTGCCACTTGTGT
CAGAGATGCCCGTCCACCACATAACCTTTGTCGTGGTTTTGGTTGTCCAG----------
ATTTATGTAATCAAACCCGTTGTCCACACGATTATCAATGTGAAACCATTAGCACCAATA
TCGTGAAATGTTCACCAAAGAATGACGAATGTAAATGGCATCGTTGTCCACCAGGTTCCA
GCTGCTTCAATAGTAGAAACGGTCCACACTGTCTTGCCAATAATGTATTCCCACAACTTT
GTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGAGGTAATCCAACTT
GTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGTGCAGAGCTATCAT
CAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAATTGTACCAATACTA
GATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACTACTGCTGCTTCAA
CCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACTACTGCAGGTACAA
CAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCTGCTTCCTCAGCCG
ATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGTGCCGCTTCAAGTG
AACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCTTCAAGTAGCGCTCCAT
CCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCTGCATCATCAGCTG
CAAGCTCAGAAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
Length of connected seq. 1357
Full length Seq ID -
Full length Seq. -
Length of full length seq. -