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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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CFC489
Library CF
(Link to library)
Clone ID CFC489
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC489P
(Link to Original site)
Representative DNA sequence 
>CFC489 (CFC489Q) /CSM/CF/CFC4-D/CFC489Q.Seq.d/
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAA
CCAAAAAAAAAAXXXXXXXXXXAATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGN
GGNATNTTAAGNTNNGAATTTNANCCCCCNANACAACCNANATCCCTTGATTGGGCTNNA
AATGAAAATGATGATCGNGACTATNATGATCGNGNCTATNATGATGATGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iksl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---MSKFPXMCLKTWXXXKXXIXXPXTTXIP*lgxk*k**sxlx*sxlx***
Translated Amino Acid sequence (All Frames) 
Frame A:
iksl*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKPKKK---

---nvqisixvfknvxxx*xxnxxpxxnxxpliglxmkmmixtxmixxxmmm

Frame B:
lnhcsilfifklnintikks*n*ickinl*qklvi*kkknqkk---

---MSKFPXMCLKTWXXXKXXIXXPXTTXIP*lgxk*k**sxlx*sxlx***

Frame C:
*iivvfcsysn*isiqlkkvkikfvksicnkn**fkkkktkkk---

---cpnfhxcv*krggxlxxefxppxqpxsldwaxnenddrdyxdrxyxdd
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC489 (CFC489Q) /CSM/CF/CFC4-D/CFC489Q.Seq.d/                        174   5e-43
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        170   7e-42
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        170   7e-42
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                        170   7e-42
SFJ792 (SFJ792Q) /CSM/SF/SFJ7-D/SFJ792Q.Seq.d/                        170   7e-42
SFI660 (SFI660Q) /CSM/SF/SFI6-C/SFI660Q.Seq.d/                        170   7e-42
SFH694 (SFH694Q) /CSM/SF/SFH6-D/SFH694Q.Seq.d/                        170   7e-42
SFH594 (SFH594Q) /CSM/SF/SFH5-D/SFH594Q.Seq.d/                        170   7e-42
SFG208 (SFG208Q) /CSM/SF/SFG2-A/SFG208Q.Seq.d/                        170   7e-42
SFE832 (SFE832Q) /CSM/SF/SFE8-B/SFE832Q.Seq.d/                        170   7e-42
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   143   2e-70  3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   143   8e-47  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    96   2e-32  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.   103   1e-18  1
AE017339|AE017339.1 Mycoplasma mobile 163K section 3 of 3 of the complete genome.    38   0.009  4
AC014725|AC014725.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    34   0.027  3
BX957233|BX957233.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-224H10.    36   0.055  3
BX152671|BX152671.1 Danio rerio genomic clone DKEY-113L5, genomic survey sequence.    38   0.20   2
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.21   2
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.25   4
dna update 2004. 5.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    58   9e-08
protein update 2008.12.24
PSORT 

 psg: 0.24  gvh: 0.44  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.49  mip: 0.00
 nuc: 0.35  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: nuclear
	 24.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for CFC489 is nuc
5' end seq. ID CFC489F
5' end seq. 
>CFC489F.Seq
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAA
CCAAAAAAAAAA----------
Length of 5' end seq. 132
3' end seq. ID CFC489Z
3' end seq. 
>CFC489Z.Seq
----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGNGGNATNTTAAGN
TNNGAATTTNANCCCCCNANACAACCNANATCCCTTGATTGGGCTNNAAATGAAAATGAT
GATCGNGACTATNATGATCGNGNCTATNATGATGATGA
Length of 3' end seq. 148
Connected seq. ID CFC489P
Connected seq. 
>CFC489P.Seq
ATTAAATCATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAG
TTAAAATTAAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAA
CCAAAAAAAAAA----------AATGTCCAAATTTCCATANATGTGTTTAAAAACGTGGN
GGNATNTTAAGNTNNGAATTTNANCCCCCNANACAACCNANATCCCTTGATTGGGCTNNA
AATGAAAATGATGATCGNGACTATNATGATCGNGNCTATNATGATGATGA
Length of connected seq. 280
Full length Seq ID -
Full length Seq. -
Length of full length seq. -