CFC472 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC472
Library	CF (Link to library)
Clone ID	CFC472 (Link to dictyBase)
Atlas ID	-
NBRP ID	G01597
dictyBase ID	DDB0189699
Link to Contig	Contig-U12346-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC4-C/CFC472Q.Seq.d/
Representative seq. ID	CFC472E (Link to Original site)
Representative DNA sequence	>CFC472 (CFC472Q) /CSM/CF/CFC4-C/CFC472Q.Seq.d/ ATGAGTGTTTTTTACTCCAAATTAAAAATAAATACTACACATAACAAATTATTCAATAAA TTATAATACAATCATATATTTATATATATATAATAAAATATGAGTACAACCACAGCAACA CCAACAACAACAACACCAACACCAACAACAACAACACCAACAGATTCACTCTCAAATTAT AAAGAGGATGAACTTCAAAATCTATCAGTTCAAAAATTAAAAGAATTAATTACCAGTGGG GGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATA CGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATT GACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCA TATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAG GAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAG AAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTG TTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTAT GAANTATTTACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAATAAAGGAA CAAGAGGAAGCAGTAAAAAAAGAGAAACGAGAGAGTAGCGAGTCTATCAAAGTATTTAGA GATAAAAGTGGAACCATATGTTCAAGGCAATAAAGCTGACTTTGAAAATATGGTAGTCAA CGAAGCTAAAGAGATGGCTGCAGCACCAGGTGGTTTGGATTTGTTGTCCCTATTGGGTTA TATTTACATTCAAGAGGCAAAACAACATTCACTCTTTGGTTTCTTTCATGAGATCTCTGA GAAAGGTCATAAAGCAAAAGAGATTGTTAGTGTGGTTAGTGCCGCTTTGAAAATGCAAAA ATCACTTCAAGAGGAAGGTGTATTGGATGAGACTTCCGCCACTGGTATACCATCCTCCAA ACAAGAGAGTATGTTTAAAGAAGGCTTGAAATTAATTTGGAAAATTGGTAGATTGGATAT CGATAGTGTAGTTAGAGAAGTATGTGAACGTGTTTTAGGTGCAAAAGGTGTAGAGAAAAG AATTTTAAAACAAAGAGTTGAAGCTGTTAAACTTTTAGGTAAAATCTTTGAAAAACATGG AAAACCAGGTAGTGATATAAATGAACTTTTTAATCAATTAAATTCACCACCACAACCAAA ACCATAAAAAAATAAAA
sequence update	2001. 6. 9
Translated Amino Acid sequence	msvfysklkintthnklfnklynhifiyiNMSTTTATPTTTTPTPTTTTPTDSLSNY KEDELQNLSVQKLKELITSGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERI DFYELLGVPSTATKNEITKAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRK KYDEYGLDSVNEMDIDPIDLFRMIFGGGLFQNYFGDLSFYEXFTKQANGETPTPEDQIKE QEEAVKKEKRESSESIKVFRDKSGTICSRQslkygsqrsrdgcstrwfgfvvpigl ylhsrgkttftlwflsdlersskrdccgcrfenakitsrgrcigdfrhwytilq treyvrrleinlenwigyrcsrsmtcfrckrcreknfktkssctfrnlktw ktr*yktfsikfttttktikk
Translated Amino Acid sequence (All Frames)	Frame A: msvfysklkintthnklfnklynhifiyiNMSTTTATPTTTTPTPTTTTPTDSLSNY KEDELQNLSVQKLKELITSGGGSYASCFEKSDFVERAKTIRSSMQALAKPSHETVYKERI DFYELLGVPSTATKNEITKAYYKLAKEYHPDKNKNDLYAEEMFKKVSEAYSVLSDEDKRK KYDEYGLDSVNEMDIDPIDLFRMIFGGGLFQNYFGDLSFYEXFTKQANGETPTPEDQIKE QEEAVKKEKRESSESIKVFRDKSGTICSRQslkygsqrsrdgcstrwfgfvvpigl ylhsrgkttftlwflsdlersskrdccgcrfenakitsrgrcigdfrhwytilq treyvrrleinlenwigyrcsrsmtcfrckrcreknfktkssctfrnlktw ktr*yktfsikfttttktikk Frame B: vfftpnkilhitnysinyntiiylyiynkivqpqqhqqqqhqhqqqqhqqihsqii krmnfkiyqfknknlpvgvvvmqvalkkvilkelklyvlqckhqnhpmklyikkel tfmnywvyhpqqqrmklqkhiinqkniiqiktkmiymqrkclkklvkhiqfylmkirer nmmnmviqlmkwiliqlicleylvvdyfkiileiyhfmxylqnkqmvkhqlqrikrn krkqkkrnervaslskyleikvepyvqgnkadfenmvvneakemaaapggldllsllgy iyiqeakqhslfgffheisekghkakeivsvvsaalkmqkslqeegvldetsatgipssk qesmfkeglkliwkigrldidsvvrevcervlgakgvekrilkqrveavkllgkifekhg kpgsdinelfnqlnsppqpkpknk Frame C: ecfllqiknkyytqiiqiiiqsyiyiyiikyeynhsntnnnntntnnnntnrftlkl* rgtsksisskikrinyqwgwlckllkkfcrksnytffnasisktipncirkn lliigctihsnkenyksiliskrissrkqkficrgnvkssifsfireke iiwfrfsngysnfvndiwwwiisklfwrfiilxiyktskwntnsrgsnkgt rgsskkretrervyqsirkwnhmfkaikltlkiwstklkrwlqhqvvwiccpywvi ftfkrqnnihslvsfmrslrkvikqkrllvwlvplkcknhfkrkvywmrlpplvyhppn krvclkkanfgklvdwisivlekyvnvfvqkvrkefnkelkllnfvkslknme nqvvimnflinihhhnqnhkkik
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC472 (CFC472Q) /CSM/CF/CFC4-C/CFC472Q.Seq.d/ 2258 0.0 AFJ269 (AFJ269Q) /CSM/AF/AFJ2-C/AFJ269Q.Seq.d/ 2147 0.0 CHE470 (CHE470Q) /CSM/CH/CHE4-C/CHE470Q.Seq.d/ 2113 0.0 CFI628 (CFI628Q) /CSM/CF/CFI6-B/CFI628Q.Seq.d/ 1415 0.0 AFN618 (AFN618Q) /CSM/AF/AFN6-A/AFN618Q.Seq.d/ 1384 0.0 AFM695 (AFM695Q) /CSM/AF/AFM6-D/AFM695Q.Seq.d/ 1338 0.0 AFN178 (AFN178Q) /CSM/AF/AFN1-D/AFN178Q.Seq.d/ 1336 0.0 AFD592 (AFD592Q) /CSM/AF/AFD5-D/AFD592Q.Seq.d/ 1326 0.0 CHB272 (CHB272Q) /CSM/CH/CHB2-C/CHB272Q.Seq.d/ 1322 0.0 SFC362 (SFC362Q) /CSM/SF/SFC3-C/SFC362Q.Seq.d/ 1296 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AP006628\|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 36 7e-07 23 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 40 3e-06 16 AE014824\|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence. 38 1e-05 12 AE014816\|AE014816.1 Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence. 32 1e-05 13 AL445565\|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3. 32 2e-05 23 AP003190\|AP003190.2 Clostridium perfringens DNA, complete genome, section 6/10. 34 2e-05 15 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 3e-05 16 BM513627\|BM513627.1 kx97b08.y2 Parastrongyloides trichosuri PA SL1 TOPO v1 Murphy Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to WP:CE24911 F22B7.5 ;, mRNA sequence. 48 3e-05 2 AP004171\|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 38 4e-05 17 AU236712\|AU236712.1 Arabidopsis thaliana cDNA clone:RAFL15-17-E11, 5'-end. 46 7e-05 3
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value BT087234_1(BT087234\|pid:none) Zea mays full-length cDNA clone ZM... 98 3e-38 AK105408_1(AK105408\|pid:none) Oryza sativa Japonica Group cDNA c... 99 4e-35 AC006841_27(AC006841\|pid:none) Arabidopsis thaliana chromosome 2... 96 1e-34 AK105364_1(AK105364\|pid:none) Oryza sativa Japonica Group cDNA c... 98 2e-34 EF146989_1(EF146989\|pid:none) Populus trichocarpa clone WS01225_... 94 6e-33 AC012190_9(AC012190\|pid:none) Arabidopsis thaliana chromosome 1 ... 97 4e-32 AC098833_14(AC098833\|pid:none) Oryza sativa (japonica cultivar-g... 86 8e-32 EU953691_1(EU953691\|pid:none) Zea mays clone 1444156 chaperone p... 84 1e-30 AC174144_13(AC174144\|pid:none) Medicago truncatula clone mth2-63... 83 4e-30 AF111710_1(AF111710\|pid:none) Oryza sativa subsp. indica putativ... 82 3e-29
protein update	2009. 6.30
PSORT	psg: 0.86 gvh: 0.51 alm: 0.48 top: 0.27 tms: 0.00 mit: 0.44 mip: 0.00 nuc: 0.10 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 28.0 %: cytoplasmic 20.0 %: mitochondrial 20.0 %: nuclear 12.0 %: extracellular, including cell wall 12.0 %: vacuolar 4.0 %: vesicles of secretory system 4.0 %: endoplasmic reticulum >> prediction for CFC472 is cyt
5' end seq. ID	CFC472F
5' end seq.	>CFC472F.Seq ATGAGTGTTTTTTACTCCAAATTAAAAATAAATACTACACATAACAAATTATTCAATAAA TTATAATACAATCATATATTTATATATATATAATAAAATATGAGTACAACCACAGCAACA CCAACAACAACAACACCAACACCAACAACAACAACACCAACAGATTCACTCTCAAATTAT AAAGAGGATGAACTTCAAAATCTATCAGTTCAAAAATTAAAAGAATTAATTACCAGTGGG GGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATA CGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATT GACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCA TATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAG GAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAG AAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTG TTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATT----------
Length of 5' end seq.	649
3' end seq. ID	CFC472Z
3' end seq.	>CFC472Z.Seq ----------TAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTGTTTAGAATG ATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTATGAANTATTT ACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAATAAAGGAACAAGAGGAA GCAGTAAAAAAAGAGAAACGAGAGAGTAGCGAGTCTATCAAAGTATTTAGAGATAAAAGT GGAACCATATGTTCAAGGCAATAAAGCTGACTTTGAAAATATGGTAGTCAACGAAGCTAA AGAGATGGCTGCAGCACCAGGTGGTTTGGATTTGTTGTCCCTATTGGGTTATATTTACAT TCAAGAGGCAAAACAACATTCACTCTTTGGTTTCTTTCATGAGATCTCTGAGAAAGGTCA TAAAGCAAAAGAGATTGTTAGTGTGGTTAGTGCCGCTTTGAAAATGCAAAAATCACTTCA AGAGGAAGGTGTATTGGATGAGACTTCCGCCACTGGTATACCATCCTCCAAACAAGAGAG TATGTTTAAAGAAGGCTTGAAATTAATTTGGAAAATTGGTAGATTGGATATCGATAGTGT AGTTAGAGAAGTATGTGAACGTGTTTTAGGTGCAAAAGGTGTAGAGAAAAGAATTTTAAA ACAAAGAGTTGAAGCTGTTAAACTTTTAGGTAAAATCTTTGAAAAACATGGAAAACCAGG TAGTGATATAAATGAACTTTTTAATCAATTAAATTCACCACCACAACCAAAACCATAAAA AAATAAAA
Length of 3' end seq.	778
Connected seq. ID	CFC472P
Connected seq.	>CFC472P.Seq ATGAGTGTTTTTTACTCCAAATTAAAAATAAATACTACACATAACAAATTATTCAATAAA TTATAATACAATCATATATTTATATATATATAATAAAATATGAGTACAACCACAGCAACA CCAACAACAACAACACCAACACCAACAACAACAACACCAACAGATTCACTCTCAAATTAT AAAGAGGATGAACTTCAAAATCTATCAGTTCAAAAATTAAAAGAATTAATTACCAGTGGG GGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATA CGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATT GACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCA TATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAG GAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAG AAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTG TTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATT----------T AGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTGTTTAGAATGATATTTGGTGG TGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTATGAANTATTTACAAAACAAGC AAATGGTGAAACACCAACTCCAGAGGATCAAATAAAGGAACAAGAGGAAGCAGTAAAAAA AGAGAAACGAGAGAGTAGCGAGTCTATCAAAGTATTTAGAGATAAAAGTGGAACCATATG TTCAAGGCAATAAAGCTGACTTTGAAAATATGGTAGTCAACGAAGCTAAAGAGATGGCTG CAGCACCAGGTGGTTTGGATTTGTTGTCCCTATTGGGTTATATTTACATTCAAGAGGCAA AACAACATTCACTCTTTGGTTTCTTTCATGAGATCTCTGAGAAAGGTCATAAAGCAAAAG AGATTGTTAGTGTGGTTAGTGCCGCTTTGAAAATGCAAAAATCACTTCAAGAGGAAGGTG TATTGGATGAGACTTCCGCCACTGGTATACCATCCTCCAAACAAGAGAGTATGTTTAAAG AAGGCTTGAAATTAATTTGGAAAATTGGTAGATTGGATATCGATAGTGTAGTTAGAGAAG TATGTGAACGTGTTTTAGGTGCAAAAGGTGTAGAGAAAAGAATTTTAAAACAAAGAGTTG AAGCTGTTAAACTTTTAGGTAAAATCTTTGAAAAACATGGAAAACCAGGTAGTGATATAA ATGAACTTTTTAATCAATTAAATTCACCACCACAACCAAAACCATAAAAAAATAAAA
Length of connected seq.	1427
Full length Seq ID	CFC472E
Full length Seq.	>CFC472E.Seq ATGAGTGTTTTTTACTCCAAATTAAAAATAAATACTACACATAACAAATTATTCAATAAA TTATAATACAATCATATATTTATATATATATAATAAAATATGAGTACAACCACAGCAACA CCAACAACAACAACACCAACACCAACAACAACAACACCAACAGATTCACTCTCAAATTAT AAAGAGGATGAACTTCAAAATCTATCAGTTCAAAAATTAAAAGAATTAATTACCAGTGGG GGTGGTAGTTATGCAAGTTGCTTTGAAAAAAGTGATTTTGTAGAAAGAGCTAAAACTATA CGTTCTTCAATGCAAGCATTAGCAAAACCATCCCATGAAACTGTATATAAAGAAAGAATT GACTTTTATGAATTATTGGGTGTACCATCCACAGCAACAAAGAATGAAATTACAAAAGCA TATTATAAATTAGCAAAAGAATATCATCCAGATAAAAACAAAAATGATTTATATGCAGAG GAAATGTTTAAAAAAGTTAGTGAAGCATATTCAGTTTTATCTGATGAAGATAAGAGAAAG AAATATGATGAATATGGTTTAGATTCAGTTAATGAAATGGATATTGATCCAATTGATTTG TTTAGAATGATATTTGGTGGTGGATTATTTCAAAATTATTTTGGAGATTTATCATTTTAT GAANTATTTACAAAACAAGCAAATGGTGAAACACCAACTCCAGAGGATCAAATAAAGGAA CAAGAGGAAGCAGTAAAAAAAGAGAAACGAGAGAGTAGCGAGTCTATCAAAGTATTTAGA GATAAAAGTGGAACCATATGTTCAAGGCAATAAAGCTGACTTTGAAAATATGGTAGTCAA CGAAGCTAAAGAGATGGCTGCAGCACCAGGTGGTTTGGATTTGTTGTCCCTATTGGGTTA TATTTACATTCAAGAGGCAAAACAACATTCACTCTTTGGTTTCTTTCATGAGATCTCTGA GAAAGGTCATAAAGCAAAAGAGATTGTTAGTGTGGTTAGTGCCGCTTTGAAAATGCAAAA ATCACTTCAAGAGGAAGGTGTATTGGATGAGACTTCCGCCACTGGTATACCATCCTCCAA ACAAGAGAGTATGTTTAAAGAAGGCTTGAAATTAATTTGGAAAATTGGTAGATTGGATAT CGATAGTGTAGTTAGAGAAGTATGTGAACGTGTTTTAGGTGCAAAAGGTGTAGAGAAAAG AATTTTAAAACAAAGAGTTGAAGCTGTTAAACTTTTAGGTAAAATCTTTGAAAAACATGG AAAACCAGGTAGTGATATAAATGAACTTTTTAATCAATTAAATTCACCACCACAACCAAA ACCATAAAAAAATAAAA
Length of full length seq.	1337

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas