>CFC467 (CFC467Q) /CSM/CF/CFC4-C/CFC467Q.Seq.d/
XXXXXXXXXXATCGATTATGCATTCTTAAGAAGATTACCNCNAACGTATAAAAGTTGATT
TGCCTGATAAAGACCAAAGNAAACATATTTTNCNAATTATGTTAGAATATCATGTAGAAA
ATGATTTTGATTATGATAAAATTGCAAATTTAACANAAGGTTATTCAGGTTCAGATTTAA
AGGAATTATGTAAAAAAGCTTCAATGCGTTTTATGAGATNCCGACCTAAAACCGATAATA
TATTT

---simhs*EDYXXRIKVDLPDKDQXKHIXXIMLEYHVENDFDYDKIANLTXGYSGSDLK
ELCKKASMRFMRXRPKTDNIF

Frame A:
---simhs*EDYXXRIKVDLPDKDQXKHIXXIMLEYHVENDFDYDKIANLTXGYSGSDLK
ELCKKASMRFMRXRPKTDNIF


Frame B:
---rlcilkkitxnv*klicliktkxnifxxlc*nim*kmilimiklqi*xkviqvqi*r
nyvkklqcvl*dxdlkpiiy


Frame C:
---dyaflrrlpxtyks*fa**rpkxtyfxnyvriscrk*f*l**nckfnxrlfrfrfkg
im*ksfnafyexpt*nr*yi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC467 (CFC467Q) /CSM/CF/CFC4-C/CFC467Q.Seq.d/                        424   e-118
SFJ291 (SFJ291Q) /CSM/SF/SFJ2-D/SFJ291Q.Seq.d/                        400   e-111
SFE671 (SFE671Q) /CSM/SF/SFE6-C/SFE671Q.Seq.d/                        400   e-111
CFG430 (CFG430Q) /CSM/CF/CFG4-B/CFG430Q.Seq.d/                        400   e-111
CFH536 (CFH536Q) /CSM/CF/CFH5-B/CFH536Q.Seq.d/                        389   e-107
SFD761 (SFD761Q) /CSM/SF/SFD7-C/SFD761Q.Seq.d/                        377   e-104
VFH694 (VFH694Q) /CSM/VF/VFH6-D/VFH694Q.Seq.d/                        375   e-103
SFK615 (SFK615Q) /CSM/SF/SFK6-A/SFK615Q.Seq.d/                        359   1e-98
AFI353 (AFI353Q) /CSM/AF/AFI3-C/AFI353Q.Seq.d/                        353   8e-97
AFI328 (AFI328Q) /CSM/AF/AFI3-B/AFI328Q.Seq.d/                        343   7e-94

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.   214   3e-88  6
AL732627|AL732627.14 Mouse DNA sequence from clone RP23-183L6 on chromosome 4.    48   0.058  1
AP003360|AP003360.3 Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome, section 3/9.    32   0.30   7
AC024255|AC024255.22 Homo sapiens 12 BAC RP11-31A23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44   0.91   1
AL671042|AL671042.10 Mouse DNA sequence from clone RP23-382O24 on chromosome X.    44   0.91   1
AC119198|AC119198.4 Mus musculus chromosome 6 clone RP24-180C9 map 6, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    38   1.3    4
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    36   1.7    4
BX248115|BX248115.12 Zebrafish DNA sequence from clone CH211-208K15 in linkage group 16.    38   1.7    5
CA916587|CA916587.1 PCSC18452 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to No significant hits, mRNA sequence.    32   2.4    2
AC073409|AC073409.8 Homo sapiens BAC clone RP11-17O9 from 2, complete sequence.    34   3.3    4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008212_675(AP008212|pid:none) Oryza sativa (japonica cultivar-...    56   4e-07
AP005848_28(AP005848|pid:none) Oryza sativa Japonica Group genom...    54   2e-06
AC015445_1(AC015445|pid:none) Sequence of BAC F2J10 from Arabido...    52   6e-06
AP000417_22(AP000417|pid:none) Arabidopsis thaliana genomic DNA,...    51   1e-05
EU961713_1(EU961713|pid:none) Zea mays clone 237817 unknown mRNA.      50   2e-05
AE009439_486(AE009439|pid:none) Methanopyrus kandleri AV19, comp...    49   5e-05
(P28737) RecName: Full=Protein MSP1; AltName: Full=TAT-binding h...    47   9e-05
AE014134_1903(AE014134|pid:none) Drosophila melanogaster chromos...    48   9e-05
AP004300_20(AP004300|pid:none) Oryza sativa Japonica Group genom...    48   9e-05
A69086(A69086) cell division control protein Cdc48 - Methanobact...    48   1e-04

 psg: 0.75  gvh: 0.32  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFC467 is nuc

>CFC467Z.Seq
----------ATCGATTATGCATTCTTAAGAAGATTACCNCNAACGTATAAAAGTTGATT
TGCCTGATAAAGACCAAAGNAAACATATTTTNCNAATTATGTTAGAATATCATGTAGAAA
ATGATTTTGATTATGATAAAATTGCAAATTTAACANAAGGTTATTCAGGTTCAGATTTAA
AGGAATTATGTAAAAAAGCTTCAATGCGTTTTATGAGATNCCGACCTAAAACCGATAATA
TATTT