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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC454
Library CF
(Link to library)
Clone ID CFC454
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC454F
(Link to Original site)
Representative DNA sequence 
>CFC454 (CFC454Q) /CSM/CF/CFC4-C/CFC454Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ivvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
ivvfcsysn*ISIQLKKVKIKFVKSICNKN**fkkkktkkk---


Frame B:
l*yfvhiqikyqyn*kklklnl*nqfvtktsnlkkkkpkk---


Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkknqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF502 (SLF502Q) /CSM/SL/SLF5-A/SLF502Q.Seq.d/                        155   2e-37
SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                        155   2e-37
SHF559 (SHF559Q) /CSM/SH/SHF5-C/SHF559Q.Seq.d/                        155   2e-37
SHA894 (SHA894Q) /CSM/SH/SHA8-D/SHA894Q.Seq.d/                        155   2e-37
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                        155   2e-37
SFK778 (SFK778Q) /CSM/SF/SFK7-D/SFK778Q.Seq.d/                        155   2e-37
SFK753 (SFK753Q) /CSM/SF/SFK7-C/SFK753Q.Seq.d/                        155   2e-37
SFK673 (SFK673Q) /CSM/SF/SFK6-D/SFK673Q.Seq.d/                        155   2e-37
SFK593 (SFK593Q) /CSM/SF/SFK5-D/SFK593Q.Seq.d/                        155   2e-37
SFK451 (SFK451Q) /CSM/SF/SFK4-C/SFK451Q.Seq.d/                        155   2e-37
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.    88   8e-31  2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.    80   2e-28  2
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank.    88   3e-14  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.    80   8e-12  1
BX957233|BX957233.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-224H10.    36   0.005  4
AL161576|AL161576.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 72.    40   0.026  5
AC148398|AC148398.4 Medicago truncatula clone mth2-24c23, WORKING DRAFT SEQUENCE, 2 ordered pieces.    32   0.039  7
BV025443|BV025443.1 S212P6456FC5.T0 CZECHII/Ei Mus musculus STS genomic, sequence tagged site.    42   0.040  2
AX196294|AX196294.1 Sequence 1 from Patent WO0151627.              38   0.042  4
BX322622|BX322622.10 Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8.    36   0.044  5
dna update 2004. 5.26
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 74,169,940
protein update 2009. 5.12
PSORT -
5' end seq. ID CFC454F
5' end seq. 
>CFC454F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAACCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -