CFC445 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC445
Library	CF (Link to library)
Clone ID	CFC445 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16243-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC4-B/CFC445Q.Seq.d/
Representative seq. ID	CFC445E (Link to Original site)
Representative DNA sequence	>CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGA GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGC AGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGAC CGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGT TGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAA CTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGA AAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACC ATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCT CACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTA CAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGC TTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATT ACATCGTCGTAAAGGTCAATATGGTGTAATCTCTATGTGTAT
sequence update	2001. 6. 9
Translated Amino Acid sequence	YLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKA KRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGL PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQE DPIISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKT EDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAE RLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFY SCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGQYGVISMC
Translated Amino Acid sequence (All Frames)	Frame A: ifiynitphn*nviqfknnyfsslkhwtnfriksnfwisirrycncctisysnls krsiqrdstrfistsytyyqsyqirskinwrccygssitkiitrcnrsschiisrf tkgstmlysqqtmfirftsncqlcsssqsrflhwfsrrcrinefksngmgwwfqrgcpr gsnhwllqhygsnlkcrrafwchqkrprilckftqegrcrpksrirnrsshrkd rgwqnhrrrrrrypenhrcrfgqiktsfqrgwynhrwlsnewcrrlfsyekkyrr kigsqgigfrsfcccrcrtihygywssrcnssrlktswshhryrrfnqsfcfssil qlgfgfgyeqsskwlwyrfrssircywcpsngyhfkritssrsiwcnlyvy Frame B: YLYIILHPITNKMSFNSRIETISRHLSTGPILESNPTSGSVKSGDDIVIVAPFRTAICKA KRGAFKETAPDDLLAPVIKHIIKVTKLDPKLIGDVVMGAVLPRSSQGATEVRVATLLAGL PKEVPCYTVNRQCSSGLQAIANCAAAVKAGFYDIGLAGGVESMSLNPMAWDGGFNEVAQE DPIISGCYNTMGQTSENVAERFGVTRKDQDEFSVNSHKKAGAAQKAGKFDDEIVPVTVKT EDGKTIVVDKDEGIREKTTVADLAKLKPAFKEGGTTTAGNSSQMSDGAAACLVMKRSTAE RLGLKVELVFVAFAAVGVEPSIMGIGPAVAIPAALKQAGLTTKDIDVFEINEAFASQAFY SCKVLGLDMNKVNPNGSGIALGHPLGATGARQMATISRELHRRKGQYGVISMC Frame C: iyiyytplikchsiqelklflvtaldqfnqiqlldqlnqemilllhhfvqqfvkl keehskrqhqmiyhqllnilsklpniqnlemllweqyyqdhhkvqpklelphyqvy qrkyhviqstdnvhqvykqlpivqqqskqvsmtlvqavnqviqwhgmvvstrlpkr iqslvvvttlwvkplkmsqsvlvspektkmnslihtrrqvppkkqvnltmksfqsprp rmakpsssiktkvsvrkpplqiwpnnqlskrvvqpplvtlvkvmvpplvlkevppk dwvsrlnwfsllllsvsnhplwvlvqplqfqppnklvsplkistflksmkllllkhft vvrfwvwitkliqmalvslvihvllvpvkwlpfqenyivvkvnmv*slcv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC445 (CFC445Q) /CSM/CF/CFC4-B/CFC445Q.Seq.d/ 2462 0.0 CFF662 (CFF662Q) /CSM/CF/CFF6-C/CFF662Q.Seq.d/ 2450 0.0 SFD792 (SFD792Q) /CSM/SF/SFD7-D/SFD792Q.Seq.d/ 2444 0.0 CFC529 (CFC529Q) /CSM/CF/CFC5-B/CFC529Q.Seq.d/ 2434 0.0 SFA524 (SFA524Q) /CSM/SF/SFA5-A/SFA524Q.Seq.d/ 2430 0.0 AFA747 (AFA747Q) /CSM/AF/AFA7-B/AFA747Q.Seq.d/ 2426 0.0 AFG267 (AFG267Q) /CSM/AF/AFG2-C/AFG267Q.Seq.d/ 2424 0.0 AFE219 (AFE219Q) /CSM/AF/AFE2-A/AFE219Q.Seq.d/ 2424 0.0 VFD865 (VFD865Q) /CSM/VF/VFD8-C/VFD865Q.Seq.d/ 2413 0.0 VFM636 (VFM636Q) /CSM/VF/VFM6-B/VFM636Q.Seq.d/ 2401 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 2216 0.0 1 CA917334\|CA917334.1 EST641481 GPOD Medicago truncatula cDNA clone GPOD-35H18, mRNA sequence. 40 3e-18 7 CA858588\|CA858588.1 EST635843 GLSD Medicago truncatula cDNA clone pGLSD-38M16, mRNA sequence. 40 3e-14 6 CB005315\|CB005315.1 VVC011E10_126660 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC011E10 5, mRNA sequence. 60 2e-13 5 AU089542\|AU089542.1 Lotus japonicus flower bud cDNA clone: Ljfb-v09. 44 1e-12 5 CB008288\|CB008288.1 VVC055H06_148036 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC055H06 5, mRNA sequence. 60 2e-11 4 CF213585\|CF213585.1 CGF1000794_F07 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0006_IF_F07 5', mRNA sequence. 60 6e-10 3 BM065622\|BM065622.1 KS07005E12 KS07 Capsicum annuum cDNA, mRNA sequence. 68 1e-09 3 CB893643\|CB893643.1 EST646435 HOGA Medicago truncatula cDNA clone HOGA-28F15, mRNA sequence. 40 6e-09 5 CD007738\|CD007738.1 VVB078G11_334604 An expressed sequence tag database for abiotic stressed leaves of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVB078G11 5, mRNA sequence. 60 3e-08 2
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AC116986_75(AC116986\|pid:none) Dictyostelium discoideum chromoso... 760 0.0 X75329_1(X75329\|pid:none) M.indica (Manila) THMF5 mRNA for 3-ket... 419 e-116 AM474896_9(AM474896\|pid:none) Vitis vinifera contig VV79X001698.... 418 e-115 S57792(S57792)acetyl-CoA C-acyltransferase (EC 2.3.1.16) B precu... 417 e-115 AB333797_1(AB333797\|pid:none) Glycine max mRNA for peroxisomal 3... 414 e-114 T07989(T07989) acetyl-CoA C-acyltransferase (EC 2.3.1.16) precur... 412 e-113 (Q56WD9) RecName: Full=3-ketoacyl-CoA thiolase 2, peroxisomal; ... 412 e-113 BT070433_1(BT070433\|pid:none) Picea sitchensis clone WS02729_F15... 410 e-113 AX025481_1(AX025481\|pid:none) Sequence 7 from Patent WO0032789. 409 e-112 EU964831_1(EU964831\|pid:none) Zea mays clone 281881 3-ketoacyl-C... 409 e-112
protein update	2009. 6.30
PSORT	psg: 0.87 gvh: 0.40 alm: 0.28 top: 0.33 tms: 0.07 mit: 0.33 mip: 0.05 nuc: 0.02 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.03 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 28.0 %: nuclear 20.0 %: cytoplasmic 16.0 %: endoplasmic reticulum 16.0 %: mitochondrial 4.0 %: cytoskeletal 4.0 %: Golgi 4.0 %: peroxisomal 4.0 %: plasma membrane 4.0 %: vesicles of secretory system >> prediction for CFC445 is nuc
5' end seq. ID	CFC445F
5' end seq.	>CFC445F.Seq ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGA GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTA----------
Length of 5' end seq.	643
3' end seq. ID	CFC445Z
3' end seq.	>CFC445Z.Seq ----------ATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAAT GTCGCAGAGCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACAC AAGAAGGCAGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACC GTAAAGACCGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAA ACCACCGTTGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACC GCTGGTAACTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGT ACCGCCGAAAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGT GTCGAACCATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAA GCTGGTCTCACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAA GCATTTTACAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCT GGTATCGCTTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCA AGAGAATTACATCGTCGTAAAGGTCAATATGGTGTAATCTCTATGTGTAT
Length of 3' end seq.	700
Connected seq. ID	CFC445P
Connected seq.	>CFC445P.Seq ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGA GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTA----------ATCCAAT CATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGAGCGTTTTGG TGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGCAGGTGCCGC CCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGACCGAGGATGG CAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGTTGCAGATTT GGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAACTCTAGTCA AATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGAAAGATTGGG TCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACCATCCATTAT GGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCTCACCACTAA AGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTACAGTTGTAA GGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGCTTTAGGTCA TCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATTACATCGTCG TAAAGGTCAATATGGTGTAATCTCTATGTGTAT
Length of connected seq.	1343
Full length Seq ID	CFC445E
Full length Seq.	>CFC445E.Seq ATATTTATATATAATATTACACCCCATAACTAATAAAATGTCATTCAATTCAAGAATTGA AACTATTTCTCGTCACTTAAGCACTGGACCAATTTTAGAATCAAATCCAACTTCTGGATC AGTTAAATCAGGAGATGATATTGTAATTGTTGCACCATTTCGTACAGCAATTTGTAAAGC TAAAAGAGGAGCATTCAAAGAGACAGCACCAGATGATTTATTAGCACCAGTTATTAAACA TATTATCAAAGTTACCAAATTAGATCCAAAATTAATTGGAGATGTTGTTATGGGAGCAGT ATTACCAAGATCATCACAAGGTGCAACCGAAGTTAGAGTTGCCACATTATTAGCAGGTTT ACCAAAGGAAGTACCATGTTATACAGTCAACAGACAATGTTCATCAGGTTTACAAGCAAT TGCCAATTGTGCAGCAGCAGTCAAAGCAGGTTTCTATGACATTGGTTTAGCAGGCGGTGT AGAATCAATGAGTTTAAATCCAATGGCATGGGATGGTGGTTTCAACGAGGTTGCCCAAGA GGATCCAATCATTAGTGGTTGTTACAACACTATGGGTCAAACCTCTGAAAATGTCGCAGA GCGTTTTGGTGTCACCAGAAAAGACCAAGATGAATTCTCTGTAAATTCACACAAGAAGGC AGGTGCCGCCCAAAAAGCAGGTAAATTTGACGATGAAATCGTTCCAGTCACCGTAAAGAC CGAGGATGGCAAAACCATCGTCGTCGATAAAGACGAAGGTATCCGTGAGAAAACCACCGT TGCAGATTTGGCCAAATTAAAACCAGCTTTCAAAGAGGGTGGTACAACCACCGCTGGTAA CTCTAGTCAAATGAGTGATGGTGCCGCCGCTTGTTTAGTTATGAAAAGAAGTACCGCCGA AAGATTGGGTCTCAAGGTTGAATTGGTTTTCGTAGCTTTTGCTGCTGTCGGTGTCGAACC ATCCATTATGGGTATTGGTCCAGCCGTTGCAATTCCAGCCGCCTTAAAACAAGCTGGTCT CACCACTAAAGATATCGACGTTTTTGAAATCAATGAAGCTTTTGCTTCTCAAGCATTTTA CAGTTGTAAGGTTTTGGGTTTGGATATGAACAAAGTTAATCCAAATGGCTCTGGTATCGC TTTAGGTCATCCATTAGGTGCTACTGGTGCCCGTCAAATGGCTACCATTTCAAGAGAATT ACATCGTCGTAAAGGTCAATATGGTGTAATCTCTATGTGTAT
Length of full length seq.	1242

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas