NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC411
Library CF
(Link to library)
Clone ID CFC411
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID CFC411P
(Link to Original site)
Representative DNA sequence 
>CFC411 (CFC411Q) /CSM/CF/CFC4-A/CFC411Q.Seq.d/
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGT
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCXXXXXXXXXXCAATGTATGTTGCCAT
TCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGG
TGATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTT
ACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACG
TGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATT
AGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATT
AGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCG
TTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGA
AACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAA
TGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGA
ATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ikqlkrf*lyfnik*ink*kkk*KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIV
GRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
VAPXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG---

---MYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY
MMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVI
TIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPG
IADRMNKELTALAPSTMKIKIIAP
Translated Amino Acid sequence (All Frames) 
Frame A:
ikqlkrf*lyfnik*ink*kkk*KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIV
GRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR
VAPXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG---

---qcmlpfklyyhsmplvvplvslwiqvmvfpilyqftkvmhyhmlfyv*i*lvvilli
t**ks*lnvvthsqqllkeksleilkrn*htlhwilklkcklqphhlh*rnhmnyqmvkl
lqlvmnvsvvqkhfsnhhswvwsllvfmkqpiiqs*nvmlifvkiymvmlyyqvvqlcsq
vlliv*ikn*lhlhhqq*klkllhh

Frame B:
lnnskdfnyililnk*tnkkknkkwmxkmfkl*llimvqvcvklvllvmmlhvlfshqll
vvqdtlvlwlvwvkrihmsvmklnqkevf*hlsiqlnmvlspigmiwkksgiilfimnfx
llxrniqfx*lklh*iqkqierk*lksclklstlqqcmlpfklyyhsmplv---

---nvcchssciitlclwsyhwyrygfr*wcfpyctnlrrlcittcyftfrfsws*sy*l
hdenln*twllihnnc*krnr*ry*reisircigf*s*nancsliicireii*itrwssy
ynw**tfplsrstfptiilgygvcwys*nnl*fnhem*c*ys*rfiw*cciirwynyvpr
yc*sye*rinctctinnen*nyctt

Frame C:
*ttqkiliif*y*inkqikkkikngwxrcssfsy**wfryv*swfcw**cstccfpincw
sskthwcygwygskgficr**ssikkryfnt*vsn*twychqlg*ygknlasyfl**tsx
csxgtsssxn*ssiksksk*rendsnhv*nfqhssnvcchssciitlclw---

---MYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDY
MMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVI
TIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPG
IADRMNKELTALAPSTMKIKIIAP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC411 (CFC411Q) /CSM/CF/CFC4-A/CFC411Q.Seq.d/                       2014   0.0
VFI283 (VFI283Q) /CSM/VF/VFI2-D/VFI283Q.Seq.d/                       1203   0.0
SHC239 (SHC239Q) /CSM/SH/SHC2-B/SHC239Q.Seq.d/                       1203   0.0
SFH124 (SFH124Q) /CSM/SF/SFH1-A/SFH124Q.Seq.d/                       1203   0.0
CHD733 (CHD733Q) /CSM/CH/CHD7-B/CHD733Q.Seq.d/                       1203   0.0
CFF292 (CFF292Q) /CSM/CF/CFF2-D/CFF292Q.Seq.d/                       1203   0.0
CFC565 (CFC565Q) /CSM/CF/CFC5-C/CFC565Q.Seq.d/                       1203   0.0
CFC453 (CFC453Q) /CSM/CF/CFC4-C/CFC453Q.Seq.d/                       1203   0.0
CFC286 (CFC286Q) /CSM/CF/CFC2-D/CFC286Q.Seq.d/                       1203   0.0
AFO694 (AFO694Q) /CSM/AF/AFO6-D/AFO694Q.Seq.d/                       1203   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   842   0.0    13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   779   0.0    12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   716   0.0    11
X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1.    965   0.0    1
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   835   0.0    18
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   898   0.0    16
X03284|X03284.1 Dictyostelium discoideum gene for actin A3-S2.    831   0.0    1
X03282|X03282.1 dictyostelium discoideum gene for actin A12.      827   0.0    1
AF508263|AF508263.1 Pyrocystis lunula actin mRNA, complete cds.   476   0.0    2
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.         716   0.0    1
dna update 2004. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK304637_1(AK304637|pid:none) Homo sapiens cDNA FLJ57283 complet...   347   e-165
(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   396   e-109
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   394   e-108
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        394   e-108
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   392   e-107
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   392   e-107
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   390   e-107
EF455784_1(EF455784|pid:none) Hyperamoeba sp. ATCC PRA-39 actin ...   390   e-107
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          390   e-107
AF508263_1(AF508263|pid:none) Pyrocystis lunula actin mRNA, comp...   387   e-106
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CFC411 is cyt
5' end seq. ID CFC411F
5' end seq. 
>CFC411F.Seq
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGT
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTC----------
Length of 5' end seq. 514
3' end seq. ID CFC411Z
3' end seq. 
>CFC411Z.Seq
----------CAATGTATGTTGCCATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGT
ACCACTGGTATCGTTATGGATTCAGGTGATGGTGTTTCCCATACTGTACCAATTTACGAA
GGTTATGCATTACCACATGCTATTTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGAT
TACATGATGAAAATCTTAACTGAACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAA
ATCGTTAGAGATATTAAAGAGAAATTAGCATACGTTGCATTGGATTTTGAAGCTGAAATG
CAAACTGCAGCCTCATCATCTGCATTAGAGAAATCATATGAATTACCAGATGGTCAAGTT
ATTACAATTGGTAATGAACGTTTCCGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTG
GGTATGGAGTCTGCTGGTATTCATGAAACAACCTATAATTCAATCATGAAATGTGATGTT
GATATTCGTAAAGATTTATATGGTAATGTTGTATTATCAGGTGGTACAACTATGTTCCCA
GGTATTGCTGATCGTATGAATAAAGAATTAACTGCACTTGCACCATCAACAATGAAAATT
AAAATTATTGCACCACC
Length of 3' end seq. 607
Connected seq. ID CFC411P
Connected seq. 
>CFC411P.Seq
ATTAAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAA
AAAAAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGT
ATGTGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTT
GGTCGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGT
GATGAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATT
GTCACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGN
GTTGCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAAT
AGAGAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTC----------CAATGTATGTTGCCAT
TCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGG
TGATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTT
ACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACG
TGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATT
AGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATT
AGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCG
TTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGA
AACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAA
TGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGA
ATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCACC
Length of connected seq. 1121
Full length Seq ID -
Full length Seq. -
Length of full length seq. -