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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC406
Library CF
(Link to library)
Clone ID CFC406
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16254-1
Original site URL
Representative seq. ID CFC406P
(Link to Original site)
Representative DNA sequence 
>CFC406 (CFC406Q) /CSM/CF/CFC4-A/CFC406Q.Seq.d/
ATATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTATCACAAGAA
ACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATGGTCCACTCG
TTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTTACTTTAACTTTAGGTG
ATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTGTTGTACAAG
TTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCTCTGGTGATA
TTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTTCTGGTAAAC
CAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAGGTCAACCAA
TCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCTCTGCTATTG
ATACTATGAATTCAATTGCTCGTGGTCXXXXXXXXXXTTAGCAGATCATCCAACCATCGA
ACGTATTATTACTCCACGTCTTGCATTGACCACCGCCGAATATCTTGCATATCAATGTGA
AAAACACGTTTTAGTTCTTTTAACCGATATGTCTTCATATGCTGATGCTCTTCGTGAGGT
ATCTGCTGCTCGTGAAGAAGTACCAGGTCGTCGTGGTTATCCAGGTTATATGTATACAGA
TCTTTCAACCATTTACGAACGTGCTGGTCGTATTCAAGGTCGTAATGGTTCTATCACTCA
AATTCCAATTTTGACTATGCCAAATGATGATATTACCCATCCAATTCCAGATTTAACTGG
TTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAATCAATAACAGACAAATCTACCC
ACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAAATCCGCCATTGGTGACGACAT
GACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTATGCCAACTATGCCATCGGTAA
AGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGCACTTTCTTCTGAAGATAAACT
CTACTTAGAATTTTTAGAACGTTTCGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAA
TCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTTATTAAAAACTTTCCCAAGCAA
TCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCAAAGGG
TACTGTAGATTCAACNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iyk*IKMVGFEDHIAAITRNYQVNPRLDYRTVTAVNGPLVILDNIRGPKFSEIVTLTLGD
GTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGSGKP
VDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARG---

---LADHPTIERIITPRLALTTAEYLAYQCEKHVLVLLTDMSSYADALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRIQGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFI
DRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANYAIGKDVQAMKAVV
GEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLLKTFPSNLLKRITEKT
IKQYYSRSSKGTVDST
Translated Amino Acid sequence (All Frames) 
Frame A:
iyinklkwldlkiisqlsqetiklthv*iiellqq*mvhslf*iisevqnslklll*l*v
mvlkekvkfwkskvkellykfskvqlvlmpntlvvnslvif*rcqyqkih*vvfsmvlvn
qlikvqmf*lknt*ifkvnqsihqlefthkk*fklvslllil*iqllvv---

---LADHPTIERIITPRLALTTAEYLAYQCEKHVLVLLTDMSSYADALREVSAAREEVPG
RRGYPGYMYTDLSTIYERAGRIQGRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIFI
DRQINNRQIYPPINVLPSLSRLMKSAIGDDMTRGDHSEVSNQMYANYAIGKDVQAMKAVV
GEEALSSEDKLYLEFLERFESSFVGQNHYENRDIFNSLDLGWSLLKTFPSNLLKRITEKT
IKQYYSRSSKGTVDST

Frame B:
yi*in*ngwi*rsyrsyhkklss*ptfrl*ncysskwstryfr*yqrskil*ncyfnfr*
wyskkrssfgnpr*kscctsfrrynwy*cqthsl*ilw*yfkdasirrfirsyfqwfw*t
s**rskcfs*rilrysrstnqsis*slptrndsnwylcy*yyefncsw---

---*qiiqpsnvlllhvlh*pppnilhinvkntf*ff*piclhmlmlfvrylllvkkyqv
vvviqviciqifqpftnvlvvfkvvmvlslkfqf*lcqmmilpiqfqi*lvtllkvkfsl
ivksitdksthqsmyyhhflvl*npplvtt*pvaitlksqikcmptmpsvkmskl*klsl
vrkhfllkinst*nf*nvsnlalsvktimkivislihwilvgly*klsqaissnvslkkl
lnntihvhqrvl*iqx

Frame C:
iyk*IKMVGFEDHIAAITRNYQVNPRLDYRTVTAVNGPLVILDNIRGPKFSEIVTLTLGD
GTQRKGQVLEIQGKRAVVQVFEGTIGIDAKHTRCEFSGDILKMPVSEDSLGRIFNGSGKP
VDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAIDTMNSIARG---

---srssnhrtyyystscidhrriscism*ktrfssfnryvfic*css*giccs*rstrs
swlsrlyvyrsfnhlrtcwsysrs*wfyhsnsnfdyak**yypsnsrfnwlhy*rsnfh*
ssnq*qtnlptnqcititfssyeirhw*rhdpwrsl*slksnvcqlchr*rcpsyescrw
*gstff*r*tllrifrtfri*lcrskpl*ks*yl*figswlvfiknfpkqspqtyh*kny
*tilftfikgycrfn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC406 (CFC406Q) /CSM/CF/CFC4-A/CFC406Q.Seq.d/                       2468   0.0
AFM777 (AFM777Q) /CSM/AF/AFM7-D/AFM777Q.Seq.d/                       1495   0.0
AFM756 (AFM756Q) /CSM/AF/AFM7-C/AFM756Q.Seq.d/                       1495   0.0
AFO705 (AFO705Q) /CSM/AF/AFO7-A/AFO705Q.Seq.d/                       1479   0.0
VFA667 (VFA667Q) /CSM/VF/VFA6-C/VFA667Q.Seq.d/                       1473   0.0
AFO250 (AFO250Q) /CSM/AF/AFO2-C/AFO250Q.Seq.d/                       1469   0.0
AFK222 (AFK222Q) /CSM/AF/AFK2-A/AFK222Q.Seq.d/                       1459   0.0
SFC779 (SFC779Q) /CSM/SF/SFC7-D/SFC779Q.Seq.d/                       1445   0.0
AFK619 (AFK619Q) /CSM/AF/AFK6-A/AFK619Q.Seq.d/                       1431   0.0
AFC794 (AFC794Q) /CSM/AF/AFC7-D/AFC794Q.Seq.d/                       1415   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.  1495   0.0    9
U63317|U63317.1 Dictyostelium discoideum vacuolar H+ ATPase B subunit (dvacB) mRNA, partial cds.  1402   0.0    1
BI703973|BI703973.1 kt46f03.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.   194   5e-75  2
BI703972|BI703972.1 kt46e07.y3 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:VATB_CAEEL Q19626 PROBABLE VACUOLAR ATP SYNTHASE SUBUNIT B ;, mRNA sequence.   194   5e-75  2
BI516063|BI516063.1 BB160021A20C05 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160021A20C05 5', mRNA sequence.   281   5e-75  2
X54875|X54875.1 C. tropicalis gene for vacuolar ATPase subunit b.   143   1e-61  8
AJ567912|AJ567912.1 Mucor circinelloides partial mRNA for vacuolar ATP synthase subunit  B (vasB gene).   222   9e-61  2
X69638|X69638.1 S.pombe gene for vacuolar H+-ATPase, subunit B.   129   6e-60  7
AY231438|AY231438.1 Suaeda maritima subsp. salsa vacuolar H(+)-ATPase subunit B (VHA-B) mRNA, complete cds.    90   2e-56  7
AL034583|AL034583.1 S.pombe chromosome I cosmid c637.             129   6e-56  8
dna update 2004. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B;          ...   504   e-141
U63317_1(U63317|pid:none) Dictyostelium discoideum vacuolar H+ A...   483   e-135
(Q38681) RecName: Full=V-type proton ATPase subunit B 1;        ...   415   e-114
AP002901_17(AP002901|pid:none) Oryza sativa Japonica Group genom...   412   e-113
EF153483_1(EF153483|pid:none) Medicago truncatula vacuolar H+-AT...   410   e-113
AK176408_1(AK176408|pid:none) Arabidopsis thaliana mRNA for vacu...   410   e-113
EF114316_1(EF114316|pid:none) Kalidium foliatum vacuolar ATPase ...   410   e-113
(P11574) RecName: Full=V-type proton ATPase subunit B;          ...   410   e-113
AK222158_1(AK222158|pid:none) Arabidopsis thaliana mRNA for vacu...   410   e-113
AL035540_7(AL035540|pid:none) Arabidopsis thaliana DNA chromosom...   410   e-113
protein update 2009. 5.12
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for CFC406 is nuc
5' end seq. ID CFC406F
5' end seq. 
>CFC406F.Seq
ATATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTATCACAAGAA
ACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATGGTCCACTCG
TTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTTACTTTAACTTTAGGTG
ATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTGTTGTACAAG
TTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCTCTGGTGATA
TTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTTCTGGTAAAC
CAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAGGTCAACCAA
TCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCTCTGCTATTG
ATACTATGAATTCAATTGCTCGTGGTC----------
Length of 5' end seq. 507
3' end seq. ID CFC406Z
3' end seq. 
>CFC406Z.Seq
----------TTAGCAGATCATCCAACCATCGAACGTATTATTACTCCACGTCTTGCATT
GACCACCGCCGAATATCTTGCATATCAATGTGAAAAACACGTTTTAGTTCTTTTAACCGA
TATGTCTTCATATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGTGAAGAAGTACCAGG
TCGTCGTGGTTATCCAGGTTATATGTATACAGATCTTTCAACCATTTACGAACGTGCTGG
TCGTATTCAAGGTCGTAATGGTTCTATCACTCAAATTCCAATTTTGACTATGCCAAATGA
TGATATTACCCATCCAATTCCAGATTTAACTGGTTACATTACTGAAGGTCAAATTTTCAT
TGATCGTCAAATCAATAACAGACAAATCTACCCACCAATCAATGTATTACCATCACTTTC
TCGTCTTATGAAATCCGCCATTGGTGACGACATGACCCGTGGCGATCACTCTGAAGTCTC
AAATCAAATGTATGCCAACTATGCCATCGGTAAAGATGTCCAAGCTATGAAAGCTGTCGT
TGGTGAGGAAGCACTTTCTTCTGAAGATAAACTCTACTTAGAATTTTTAGAACGTTTCGA
ATCTAGCTTTGTCGGTCAAAACCATTATGAAAATCGTGATATCTTTAATTCATTGGATCT
TGGTTGGTCTTTATTAAAAACTTTCCCAAGCAATCTCCTCAAACGTATCACTGAAAAAAC
TATTAAACAATACTATTCACGTTCATCAAAGGGTACTGTAGATTCAACNA
Length of 3' end seq. 760
Connected seq. ID CFC406P
Connected seq. 
>CFC406P.Seq
ATATATATAAATAAATTAAAATGGTTGGATTTGAAGATCATATCGCAGCTATCACAAGAA
ACTATCAAGTTAACCCACGTTTAGATTATAGAACTGTTACAGCAGTAAATGGTCCACTCG
TTATTTTAGATAATATCAGAGGTCCAAAATTCTCTGAAATTGTTACTTTAACTTTAGGTG
ATGGTACTCAAAGAAAAGGTCAAGTTTTGGAAATCCAAGGTAAAAGAGCTGTTGTACAAG
TTTTCGAAGGTACAATTGGTATTGATGCCAAACACACTCGTTGTGAATTCTCTGGTGATA
TTTTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTTCTGGTAAAC
CAGTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAGGTCAACCAA
TCAATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCTCTGCTATTG
ATACTATGAATTCAATTGCTCGTGGTC----------TTAGCAGATCATCCAACCATCGA
ACGTATTATTACTCCACGTCTTGCATTGACCACCGCCGAATATCTTGCATATCAATGTGA
AAAACACGTTTTAGTTCTTTTAACCGATATGTCTTCATATGCTGATGCTCTTCGTGAGGT
ATCTGCTGCTCGTGAAGAAGTACCAGGTCGTCGTGGTTATCCAGGTTATATGTATACAGA
TCTTTCAACCATTTACGAACGTGCTGGTCGTATTCAAGGTCGTAATGGTTCTATCACTCA
AATTCCAATTTTGACTATGCCAAATGATGATATTACCCATCCAATTCCAGATTTAACTGG
TTACATTACTGAAGGTCAAATTTTCATTGATCGTCAAATCAATAACAGACAAATCTACCC
ACCAATCAATGTATTACCATCACTTTCTCGTCTTATGAAATCCGCCATTGGTGACGACAT
GACCCGTGGCGATCACTCTGAAGTCTCAAATCAAATGTATGCCAACTATGCCATCGGTAA
AGATGTCCAAGCTATGAAAGCTGTCGTTGGTGAGGAAGCACTTTCTTCTGAAGATAAACT
CTACTTAGAATTTTTAGAACGTTTCGAATCTAGCTTTGTCGGTCAAAACCATTATGAAAA
TCGTGATATCTTTAATTCATTGGATCTTGGTTGGTCTTTATTAAAAACTTTCCCAAGCAA
TCTCCTCAAACGTATCACTGAAAAAACTATTAAACAATACTATTCACGTTCATCAAAGGG
TACTGTAGATTCAACNA
Length of connected seq. 1267
Full length Seq ID -
Full length Seq. -
Length of full length seq. -