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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC395
Library CF
(Link to library)
Clone ID CFC395
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15687-1|Contig-U16343-1
Original site URL
Representative seq. ID CFC395P
(Link to Original site)
Representative DNA sequence 
>CFC395 (CFC395Q) /CSM/CF/CFC3-D/CFC395Q.Seq.d/
GTATACGGCCATACTAGGTTGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGAC
CTCAGGCCTTCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGGGTGCTGTATACTA
TTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAAAAAAAGGTCATCAAAAAA
AAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAAXXXXXXXXXXGAATCTTACTGCCGCTC
GTTTAGCATCCGATGTTATGGGAGTACCAACATTGATTGTAGCTCGTACCGATTCTTTGG
GAGCTGGTTTGTTGATGAGTGATGTTGATGCACGTGATAAGAAATTCATCACTGGTAAAC
GTACTGTCGAGGGTTATTATCACTTGAATTGTGGTATTGAGCAAGCCATTGAAAGAGCAC
TCAATTATGCACCCTATTGTGACTTGTTATGGTGTGAAACTTCAACACCATCCATTGAAT
TAGCCAAACAATTCGCCGATGCCGTTCATGAAAAATTCCCAGGTAAACTTTTAGCATACA
ATTGTTCACCATCTTTCCATTGGAAACAACATTTGGAACCAGATGAAATCGCCTCTTTCC
AACGTCAACTCTCTGATTTGGGCTACAAGTTCCAATTCATCACTTTGGCTGGTTTCCATG
CTCTCAATTTAACAATGTTTGAATTGNGCAAAGGATNACA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
irpy*vgntssrsi**vnrpqafqvlwlettgehrvlytilniiti*IFFNCLKKGHQKK
KKKIFXFKKK---

---NLTAARLASDVMGVPTLIVARTDSLGAGLLMSDVDARDKKFITGKRTVEGYYHLNCG
IEQAIERALNYAPYCDLLWCETSTPSIELAKQFADAVHEKFPGKLLAYNCSPSFHWKQHL
EPDEIASFQRQLSDLGYKFQFITLAGFHALNLTMFELXKGX
Translated Amino Acid sequence (All Frames) 
Frame A:
vyghtrlethhpvrsdk*idlrpskysgwrqqgnigccilf*i*lqfkffliv*kkvikk
kkkkffxlkkk---

---esycrsfsircygstnidcssyrffgswfvde*c*ct**eihhw*tycrgllslelw
y*ash*kstqlctll*lvmv*nfntih*isqtirrcrs*kipr*tfsiqlftifplettf
gtr*nrlfptstl*fglqvpihhfgwfpcsqfnnv*ixqrxt

Frame B:
ytailgwkhiipfdliskstsglpstlvgdnrgt*gavyyfkynynlnff*lfkkrsskk
kkknffx*kk---

---NLTAARLASDVMGVPTLIVARTDSLGAGLLMSDVDARDKKFITGKRTVEGYYHLNCG
IEQAIERALNYAPYCDLLWCETSTPSIELAKQFADAVHEKFPGKLLAYNCSPSFHWKQHL
EPDEIASFQRQLSDLGYKFQFITLAGFHALNLTMFELXKGX

Frame C:
irpy*vgntssrsi**vnrpqafqvlwlettgehrvlytilniiti*IFFNCLKKGHQKK
KKKIFXFKKK---

---illplv*hpmlweyqh*l*lvpilwelvc**vmlmhvirnsslvnvlsrviit*ivv
lskplkehsimhpivtcygvklqhhpln*pnnspmpfmknsqvnf*htivhhlsignniw
nqmksplsnvnsliwatssnsslwlvsmlsi*qclnxakdx
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC395 (CFC395Q) /CSM/CF/CFC3-D/CFC395Q.Seq.d/                        934   0.0
SFJ306 (SFJ306Q) /CSM/SF/SFJ3-A/SFJ306Q.Seq.d/                        916   0.0
CHD253 (CHD253Q) /CSM/CH/CHD2-C/CHD253Q.Seq.d/                        916   0.0
CHC158 (CHC158Q) /CSM/CH/CHC1-C/CHC158Q.Seq.d/                        916   0.0
CHB113 (CHB113Q) /CSM/CH/CHB1-A/CHB113Q.Seq.d/                        916   0.0
CFK340 (CFK340Q) /CSM/CF/CFK3-B/CFK340Q.Seq.d/                        916   0.0
CFJ708 (CFJ708Q) /CSM/CF/CFJ7-A/CFJ708Q.Seq.d/                        916   0.0
CFJ656 (CFJ656Q) /CSM/CF/CFJ6-C/CFJ656Q.Seq.d/                        916   0.0
CFC725 (CFC725Q) /CSM/CF/CFC7-B/CFC725Q.Seq.d/                        916   0.0
AFG871 (AFG871Q) /CSM/AF/AFG8-C/AFG871Q.Seq.d/                        912   0.0
own update 2003. 9.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   910   0.0    4
X67782|X67782.1 D.discoideum 5S ribosomal RNA gene.               236   4e-58  1
AY171066|AY171066.1 Dictyostelium discoideum extrachromosomal palindromic ribosomal RNA gene sequence, central segment.   236   4e-58  1
V00191|V00191.1 5S ribosomal RNA of slime mold (D. discoideum).   236   4e-58  1
M25202|M25202.1 D.discoideum 5S rRNA.                             236   4e-58  1
AY293825|AY293825.1 Dictyostelium discoideum transposon cluster; tRNA-Leu gene, 5S ribosomal RNA pseudogene, and tRNA-Ser gene, complete sequence.   192   5e-45  1
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    54   2e-07  2
AV638688|AV638688.1 Chlamydomonas reinhardtii cDNA clone:HC089e01_r, 5' end.    50   0.045  1
AV632462|AV632462.1 Chlamydomonas reinhardtii cDNA clone:HC008e08_r, 5' end.    50   0.045  1
AV621664|AV621664.1 Chlamydomonas reinhardtii cDNA clone:LC039c10_r, 5' end.    50   0.045  1
dna update 2004. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_17(AC117076|pid:none) Dictyostelium discoideum chromoso...   317   3e-85
AP006840_590(AP006840|pid:none) Symbiobacterium thermophilum IAM...   228   1e-58
CP000557_578(CP000557|pid:none) Geobacillus thermodenitrificans ...   224   1e-57
BA000043_676(BA000043|pid:none) Geobacillus kaustophilus HTA426 ...   224   1e-57
CP000903_1014(CP000903|pid:none) Bacillus weihenstephanensis KBA...   223   4e-57
CP001176_1060(CP001176|pid:none) Bacillus cereus B4264, complete...   221   1e-56
CP000386_2027(CP000386|pid:none) Rubrobacter xylanophilus DSM 99...   221   2e-56
CP000909_3808(CP000909|pid:none) Chloroflexus aurantiacus J-10-f...   220   3e-56
CP000922_2214(CP000922|pid:none) Anoxybacillus flavithermus WK1,...   220   4e-56
CP000359_1276(CP000359|pid:none) Deinococcus geothermalis DSM 11...   219   5e-56
protein update 2009. 5.12
PSORT 

 psg: 0.24  gvh: 0.59  alm: 0.40  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.08
 nuc: 0.14  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall

>> prediction for CFC395 is nuc
5' end seq. ID CFC395F
5' end seq. 
>CFC395F.Seq
GTATACGGCCATACTAGGTTGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGAC
CTCAGGCCTTCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGGGTGCTGTATACTA
TTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAAAAAAAGGTCATCAAAAAA
AAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAA----------
Length of 5' end seq. 213
3' end seq. ID CFC395Z
3' end seq. 
>CFC395Z.Seq
----------GAATCTTACTGCCGCTCGTTTAGCATCCGATGTTATGGGAGTACCAACAT
TGATTGTAGCTCGTACCGATTCTTTGGGAGCTGGTTTGTTGATGAGTGATGTTGATGCAC
GTGATAAGAAATTCATCACTGGTAAACGTACTGTCGAGGGTTATTATCACTTGAATTGTG
GTATTGAGCAAGCCATTGAAAGAGCACTCAATTATGCACCCTATTGTGACTTGTTATGGT
GTGAAACTTCAACACCATCCATTGAATTAGCCAAACAATTCGCCGATGCCGTTCATGAAA
AATTCCCAGGTAAACTTTTAGCATACAATTGTTCACCATCTTTCCATTGGAAACAACATT
TGGAACCAGATGAAATCGCCTCTTTCCAACGTCAACTCTCTGATTTGGGCTACAAGTTCC
AATTCATCACTTTGGCTGGTTTCCATGCTCTCAATTTAACAATGTTTGAATTGNGCAAAG
GATNACA
Length of 3' end seq. 477
Connected seq. ID CFC395P
Connected seq. 
>CFC395P.Seq
GTATACGGCCATACTAGGTTGGAAACACATCATCCCGTTCGATCTGATAAGTAAATCGAC
CTCAGGCCTTCCAAGTACTCTGGTTGGAGACAACAGGGGAACATAGGGTGCTGTATACTA
TTTTAAATATAATTACAATTTAAATTTTTTTTAATTGTTTAAAAAAAGGTCATCAAAAAA
AAAAAAAAAAAATTTTTTTNTTTAAAAAAAAAA----------GAATCTTACTGCCGCTC
GTTTAGCATCCGATGTTATGGGAGTACCAACATTGATTGTAGCTCGTACCGATTCTTTGG
GAGCTGGTTTGTTGATGAGTGATGTTGATGCACGTGATAAGAAATTCATCACTGGTAAAC
GTACTGTCGAGGGTTATTATCACTTGAATTGTGGTATTGAGCAAGCCATTGAAAGAGCAC
TCAATTATGCACCCTATTGTGACTTGTTATGGTGTGAAACTTCAACACCATCCATTGAAT
TAGCCAAACAATTCGCCGATGCCGTTCATGAAAAATTCCCAGGTAAACTTTTAGCATACA
ATTGTTCACCATCTTTCCATTGGAAACAACATTTGGAACCAGATGAAATCGCCTCTTTCC
AACGTCAACTCTCTGATTTGGGCTACAAGTTCCAATTCATCACTTTGGCTGGTTTCCATG
CTCTCAATTTAACAATGTTTGAATTGNGCAAAGGATNACA
Length of connected seq. 690
Full length Seq ID -
Full length Seq. -
Length of full length seq. -