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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC379
Library CF
(Link to library)
Clone ID CFC379
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16399-1
Original site URL
Representative seq. ID CFC379P
(Link to Original site)
Representative DNA sequence 
>CFC379 (CFC379Q) /CSM/CF/CFC3-D/CFC379Q.Seq.d/
AAATTACATGTCCAAAATTTTTTAATTTTTTTTAAATCACATGTTCAAAATTTTTTTTAA
ATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAGATCAATTCAATTTAATTATTCAAC
AAAAAGTAATATTAGAAATATGGAACAATACTTACCACAAGCTAAGGAATTTATTTCATT
TATTGATAAATCACCATCACCATATCATGCAGTTCAATACTTTTCAGAGATTTTAAAGAG
TAAAGGTTTCATTCATTTATCAGAGAAACAAATGTGGGATATTCAACCAAATAAAAAATA
TTTCTTTACTCGTAATCAATCATGTATTTCTGCTTTTGCAGTTGGTGGTAAATATAAACC
AGGTAATGGTTTTAATATTGCAGCAGCACATACTGATAGTCCAAATTTTAAAGTTAGACC
AGTATCAAAAGTTGAATCAGTTGGATATCAACAAGTTGGTGTTGAAACATATGGTGGTGG
ATTATGGTATACATGGTTTGATCGTXXXXXXXXXXAAGTTCACCACAAGGTGCATGTGCA
CCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTGCATCCACTTGTAAA
CCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCT
GATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAACCACTTCATAGACCA
GCTNTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTTATGCTTCAAATGGT
CCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCCCAATTCAAGAATTC
CTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCATTTCTGGTACTTAT
GGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATTCAATTCGTGAAACT
TGTGGTGTTGCTGATATCACTCATGGTATTAATTTAATTCAAAAATATTTTGAACAATTT
ACAAAATTAGATATTATTAAATCNATTTAGAATAAAAATTAAAAAAAAATAAAAAAATAA
AAAAAATAAAAATAAAAAAATCANCCAAAATC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nymskif*FFLNHMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISF
IDKSPSPYHAVQYFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKP
GNGFNIAAAHTDSPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDR---

---SSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHAIHPN
YTANHEPLHRPAXNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKNDSPCG
STIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYFEQFTKLDIIKSI
*nkn*kkikk*kk*k*knxpk
Translated Amino Acid sequence (All Frames) 
Frame A:
klhvqnfliffkshvqnff*itrpnfisvkikinsi*lfnkk*y*kygtiltts*giyfi
y**ititiscssilfrdfke*rfhsfiretnvgystk*kiflys*simyfcfcsww*i*t
r*wf*ycssty**skf*s*tsiks*iswistswc*niwwwimvymv*s---

---kfttrcmctidq*yh*scq*lnvcihl*tt*ikqfh*fnfkk*flnlc*ygtcyssk
lhsks*tts*tsx**rssnqi*ckftlcfkwsn*fcylgyl*kewypnsriprqk*ftmw
fnnwsnhfwylwy*ncryw*stiinafns*nlwcc*yhswy*fnskif*tiykiryy*ix
le*klkknkkikkikikksxki

Frame B:
nymskif*FFLNHMFKIFFKLPVQTSLVSKSRSIQFNYSTKSNIRNMEQYLPQAKEFISF
IDKSPSPYHAVQYFSEILKSKGFIHLSEKQMWDIQPNKKYFFTRNQSCISAFAVGGKYKP
GNGFNIAAAHTDSPNFKVRPVSKVESVGYQQVGVETYGGGLWYTWFDR---

---SSPQGACAPLINDTISRVNSSMFASTCKPHELNNFIDLTLRNSFLISADMAHAIHPN
YTANHEPLHRPAXNKGPVIKYNANLRYASNGPTSFVILDICKKNGIPIQEFLVKNDSPCG
STIGPIISGTYGIRTVDIGNPQLSMHSIRETCGVADITHGINLIQKYFEQFTKLDIIKSI
*nkn*kkikk*kk*k*knxpk

Frame C:
itcpkffnff*itcskfflnypsklh*cqnqdqfnliiqqkvileiwnntyhklrnlfhl
linhhhhimqfntfqrf*rvkvsfiyqrnkcgifnqiknisllvinhvflllqlvvninq
vmvlilqqhilivqilkldqyqklnqldinklvlkhmvvdygihgli---

---vhhkvhvhh*smiplvvsiaqclhplvnhmn*tisli*l*eivs*slliwhmlfiqi
tqqimnhfidqllikvq*snimqiyvmlqmvqlvllswisvkrmvsqfknssskmihhvv
qqlvqsflvlmvlel*ilvihnyqciqfvklvvllislmvli*fknilnnlqn*illnxf
rikikkk*knkknknkkixqn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC379 (CFC379Q) /CSM/CF/CFC3-D/CFC379Q.Seq.d/                       1901   0.0
SFH114 (SFH114Q) /CSM/SF/SFH1-A/SFH114Q.Seq.d/                       1053   0.0
SFD326 (SFD326Q) /CSM/SF/SFD3-B/SFD326Q.Seq.d/                       1053   0.0
SFD324 (SFD324Q) /CSM/SF/SFD3-A/SFD324Q.Seq.d/                       1053   0.0
CFJ820 (CFJ820Q) /CSM/CF/CFJ8-A/CFJ820Q.Seq.d/                       1053   0.0
CFJ277 (CFJ277Q) /CSM/CF/CFJ2-D/CFJ277Q.Seq.d/                       1053   0.0
CFH794 (CFH794Q) /CSM/CF/CFH7-D/CFH794Q.Seq.d/                       1053   0.0
AFM822 (AFM822Q) /CSM/AF/AFM8-A/AFM822Q.Seq.d/                       1053   0.0
AFH743 (AFH743Q) /CSM/AF/AFH7-B/AFH743Q.Seq.d/                       1053   0.0
AFH309 (AFH309Q) /CSM/AF/AFH3-A/AFH309Q.Seq.d/                       1053   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY133535|AY133535.1 Arabidopsis thaliana At5g60160/f15l12_20 mRNA, complete cds.    54   4e-10  3
AY085075|AY085075.1 Arabidopsis thaliana clone 126533 mRNA, complete sequence.    54   5e-10  3
AY045584|AY045584.1 Arabidopsis thaliana AT5g60160/f15l12_20 mRNA, complete cds.    54   6e-10  3
BG525546|BG525546.1 51-5 Stevia field grown leaf cDNA Stevia rebaudiana cDNA 5', mRNA sequence.    76   1e-09  1
AB026632|AB026632.1 Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F15L12.    54   3e-07  5
CA158596|CA158596.1 SCEZRZ3088A05.g RZ3 Saccharum officinarum cDNA clone SCEZRZ3088A05 5', mRNA sequence.    64   5e-06  1
BM518933|BM518933.1 894103E07.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, mRNA sequence.    54   5e-06  2
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    34   1e-05  16
CB380700|CB380700.1 3529_1_23_1_H04.x_4 3529 - 2 mm ear tissue from Schmidt and Hake labs Zea mays cDNA, mRNA sequence.    38   1e-04  3
CB259770|CB259770.1 23-E011176-013-009-M05-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA clone MPIZp770M059Q 5-PRIME, mRNA sequence.    54   2e-04  2
dna update 2004. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M70) RecName: Full=Aspartyl aminopeptidase;          EC=3.4....   353   4e-96
AC159446_25(AC159446|pid:none) Trypanosoma brucei chromosome 3 c...   180   9e-44
EU954490_1(EU954490|pid:none) Zea mays clone 1468685 unknown mRNA.    176   2e-42
BT062007_1(BT062007|pid:none) Zea mays full-length cDNA clone ZM...   176   2e-42
AM494966_233(AM494966|pid:none) Leishmania braziliensis chromoso...   170   7e-41
AB026632_4(AB026632|pid:none) Arabidopsis thaliana genomic DNA, ...   169   1e-40
AY085075_1(AY085075|pid:none) Arabidopsis thaliana clone 126533 ...   167   5e-40
EF576009_1(EF576009|pid:none) Oryza sativa (indica cultivar-grou...   167   8e-40
AP007151_1241(AP007151|pid:none) Aspergillus oryzae RIB40 genomi...   166   1e-39
CP001330_563(CP001330|pid:none) Micromonas sp. RCC299 chromosome...   164   4e-39
protein update 2009. 5.12
PSORT 

 psg: 0.78  gvh: 0.53  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.51  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for CFC379 is mit
5' end seq. ID CFC379F
5' end seq. 
>CFC379F.Seq
AAATTACATGTCCAAAATTTTTTAATTTTTTTTAAATCACATGTTCAAAATTTTTTTTAA
ATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAGATCAATTCAATTTAATTATTCAAC
AAAAAGTAATATTAGAAATATGGAACAATACTTACCACAAGCTAAGGAATTTATTTCATT
TATTGATAAATCACCATCACCATATCATGCAGTTCAATACTTTTCAGAGATTTTAAAGAG
TAAAGGTTTCATTCATTTATCAGAGAAACAAATGTGGGATATTCAACCAAATAAAAAATA
TTTCTTTACTCGTAATCAATCATGTATTTCTGCTTTTGCAGTTGGTGGTAAATATAAACC
AGGTAATGGTTTTAATATTGCAGCAGCACATACTGATAGTCCAAATTTTAAAGTTAGACC
AGTATCAAAAGTTGAATCAGTTGGATATCAACAAGTTGGTGTTGAAACATATGGTGGTGG
ATTATGGTATACATGGTTTGATCGT----------
Length of 5' end seq. 505
3' end seq. ID CFC379Z
3' end seq. 
>CFC379Z.Seq
----------AAGTTCACCACAAGGTGCATGTGCACCATTGATCAATGATACCATTAGTC
GTGTCAATAGCTCAATGTTTGCATCCACTTGTAAACCACATGAATTAAACAATTTCATTG
ATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCTGATATGGCACATGCTATTCATCCAA
ATTACACAGCAAATCATGAACCACTTCATAGACCAGCTNTTAATAAAGGTCCAGTAATCA
AATATAATGCAAATTTACGTTATGCTTCAAATGGTCCAACTAGTTTTGTTATCTTGGATA
TCTGTAAAAAGAATGGTATCCCAATTCAAGAATTCCTCGTCAAAAATGATTCACCATGTG
GTTCAACAATTGGTCCAATCATTTCTGGTACTTATGGTATTAGAACTGTAGATATTGGTA
ATCCACAATTATCAATGCATTCAATTCGTGAAACTTGTGGTGTTGCTGATATCACTCATG
GTATTAATTTAATTCAAAAATATTTTGAACAATTTACAAAATTAGATATTATTAAATCNA
TTTAGAATAAAAATTAAAAAAAAATAAAAAAATAAAAAAAATAAAAATAAAAAAATCANC
CAAAATC
Length of 3' end seq. 597
Connected seq. ID CFC379P
Connected seq. 
>CFC379P.Seq
AAATTACATGTCCAAAATTTTTTAATTTTTTTTAAATCACATGTTCAAAATTTTTTTTAA
ATTACCCGTCCAAACTTCATTAGTGTCAAAATCAAGATCAATTCAATTTAATTATTCAAC
AAAAAGTAATATTAGAAATATGGAACAATACTTACCACAAGCTAAGGAATTTATTTCATT
TATTGATAAATCACCATCACCATATCATGCAGTTCAATACTTTTCAGAGATTTTAAAGAG
TAAAGGTTTCATTCATTTATCAGAGAAACAAATGTGGGATATTCAACCAAATAAAAAATA
TTTCTTTACTCGTAATCAATCATGTATTTCTGCTTTTGCAGTTGGTGGTAAATATAAACC
AGGTAATGGTTTTAATATTGCAGCAGCACATACTGATAGTCCAAATTTTAAAGTTAGACC
AGTATCAAAAGTTGAATCAGTTGGATATCAACAAGTTGGTGTTGAAACATATGGTGGTGG
ATTATGGTATACATGGTTTGATCGT----------AAGTTCACCACAAGGTGCATGTGCA
CCATTGATCAATGATACCATTAGTCGTGTCAATAGCTCAATGTTTGCATCCACTTGTAAA
CCACATGAATTAAACAATTTCATTGATTTAACTTTAAGAAATAGTTTCTTAATCTCTGCT
GATATGGCACATGCTATTCATCCAAATTACACAGCAAATCATGAACCACTTCATAGACCA
GCTNTTAATAAAGGTCCAGTAATCAAATATAATGCAAATTTACGTTATGCTTCAAATGGT
CCAACTAGTTTTGTTATCTTGGATATCTGTAAAAAGAATGGTATCCCAATTCAAGAATTC
CTCGTCAAAAATGATTCACCATGTGGTTCAACAATTGGTCCAATCATTTCTGGTACTTAT
GGTATTAGAACTGTAGATATTGGTAATCCACAATTATCAATGCATTCAATTCGTGAAACT
TGTGGTGTTGCTGATATCACTCATGGTATTAATTTAATTCAAAAATATTTTGAACAATTT
ACAAAATTAGATATTATTAAATCNATTTAGAATAAAAATTAAAAAAAAATAAAAAAATAA
AAAAAATAAAAATAAAAAAATCANCCAAAATC
Length of connected seq. 1102
Full length Seq ID -
Full length Seq. -
Length of full length seq. -