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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC375
Library CF
(Link to library)
Clone ID CFC375
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16561-1
Original site URL
Representative seq. ID CFC375Z
(Link to Original site)
Representative DNA sequence 
>CFC375 (CFC375Q) /CSM/CF/CFC3-D/CFC375Q.Seq.d/
XXXXXXXXXXATNTTGGTAAANACCCTCCACCGGTAANAANATTACACTTTAAGTTGAAG
GTAAGTGACAACCNTTAATAATGTAAAAACCAAANATTCCAAGATAANGAAGGTTTTCCN
CCAGGATCAACCACGTNTCATTTTCGCTGGTAACCNATTAGAAGATGNTCGTACTCTCTC
TGATTACAATATCCAAAAAGAATCAGCTCTCCACTTGGTCTTCAGATTAAGAGGTGGTAT
GCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGA
TAATATTGAAAATGTTNNAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACA
AANATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACAT
TCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGT
CAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAA
TGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTT
CGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCAC
TGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAA
AATTCAAGACAAATAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---lvxtlhr*xxytls*r*VTTXNNVKTKXSKIXKVFXQDQPRXIFAGNXLEDXRTLSD
YNIQKESALHLVFRLRGGMQIFVKTLTGKTITLEVEGSDNIENVXTKIQDKEGIPPDQQX
LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENV
KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEGSDNIENVKTKIQDK*
Translated Amino Acid sequence (All Frames) 
Frame A:
---xw*xpstgxxitl*vegk*qplim*kpxipr*xrfsxrinhvsfslvtx*kmxvlsl
itiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmxxqrfktkkvshqtnk
x*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvlitlrm
lkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*klsl
vkplhsklkvvttlrm*kqkfktnn


Frame B:
---xgkxpppvxxlhfklkvsdnx**cknqxfqdxegfppgsttxhfrw*pirrxsysl*
lqypkrissplglqikrwyanlcqninw*dhhs*s*glr*y*kcxnkdsrqrryptrptx
infrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf**h*ec
*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfcknshw
*nhytrs*r**qh*ecknknsrqi


Frame C:
---lvxtlhr*xxytls*r*VTTXNNVKTKXSKIXKVFXQDQPRXIFAGNXLEDXRTLSD
YNIQKESALHLVFRLRGGMQIFVKTLTGKTITLEVEGSDNIENVXTKIQDKEGIPPDQQX
LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENV
KAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTG
KTITLEVEGSDNIENVKTKIQDK*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC375 (CFC375Q) /CSM/CF/CFC3-D/CFC375Q.Seq.d/                       1477   0.0
SFE569 (SFE569Q) /CSM/SF/SFE5-C/SFE569Q.Seq.d/                       1292   0.0
CHB359 (CHB359Q) /CSM/CH/CHB3-C/CHB359Q.Seq.d/                       1292   0.0
AFG443 (AFG443Q) /CSM/AF/AFG4-B/AFG443Q.Seq.d/                       1289   0.0
SFG572 (SFG572Q) /CSM/SF/SFG5-C/SFG572Q.Seq.d/                       1287   0.0
SFG568 (SFG568Q) /CSM/SF/SFG5-C/SFG568Q.Seq.d/                       1285   0.0
CHE384 (CHE384Q) /CSM/CH/CHE3-D/CHE384Q.Seq.d/                       1285   0.0
SFI250 (SFI250Q) /CSM/SF/SFI2-C/SFI250Q.Seq.d/                       1283   0.0
SFD892 (SFD892Q) /CSM/SF/SFD8-D/SFD892Q.Seq.d/                       1283   0.0
AFC682 (AFC682Q) /CSM/AF/AFC6-D/AFC682Q.Seq.d/                       1279   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1251   0.0    4
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1235   0.0    4
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1235   0.0    4
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   704   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   638   e-179  4
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   626   e-175  3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   448   e-174  4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   448   e-174  4
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      159   8e-93  4
BJ541175|BJ541175.1 Oryzias latipes cDNA clone:MF01SSB034A18, 3' end single read.   170   2e-90  4
dna update 2004. 5.26
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   415   e-114
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   415   e-114
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   415   e-114
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   411   e-113
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   399   e-110
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   397   e-109
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   397   e-109
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   397   e-109
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   397   e-109
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   397   e-109
protein update 2009. 5.12
PSORT 

 psg: 0.68  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for CFC375 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC375Z
3' end seq. 
>CFC375Z.Seq
----------ATNTTGGTAAANACCCTCCACCGGTAANAANATTACACTTTAAGTTGAAG
GTAAGTGACAACCNTTAATAATGTAAAAACCAAANATTCCAAGATAANGAAGGTTTTCCN
CCAGGATCAACCACGTNTCATTTTCGCTGGTAACCNATTAGAAGATGNTCGTACTCTCTC
TGATTACAATATCCAAAAAGAATCAGCTCTCCACTTGGTCTTCAGATTAAGAGGTGGTAT
GCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAGTTGAGGGCTCAGA
TAATATTGAAAATGTTNNAACAAAGATTCAAGACAAAGAAGGTATCCCACCAGACCAACA
AANATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCTCTGATTACAACAT
TCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGT
CAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTGATAACATTGAGAA
TGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTT
CGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATC
CACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCAC
TGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAA
AATTCAAGACAAATAAC
Length of 3' end seq. 787
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -