CFC367 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC367
Library	CF (Link to library)
Clone ID	CFC367 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U09658-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC3-C/CFC367Q.Seq.d/
Representative seq. ID	CFC367E (Link to Original site)
Representative DNA sequence	>CFC367 (CFC367Q) /CSM/CF/CFC3-C/CFC367Q.Seq.d/ AATAATAATAGTAATAGTGGTGGTAATAATTCACCATCATTTAAATCAATTATTGATGAA CAAGATTTTATATCAAAAATCGAACCAAAAAATGTTGCAACTTATGTTGGTAAACGTGGT TCATATAAGAAATCACCATCTCCAAATACAACATCACCATCATCATTGTTATCATCACCA TCATTAAAATCAACAGATAAAGAAATGTCAGAAAGAGAAATTTCAGAATCAATTATACCA TTACCATTGGATTATAATAAAAAGATGGCACAATTAAAGATTCAATTCCCATTGATTGAA GAAGAATTATTAGAGTCATTATTCCTTCAAACTGGATATCATTTTAAGGATACAATGAGT TATATTTATGAAGTATTTCCAGAGAGTAAACATAATGCTAAATCAGTTTCAAACTTTGCA AATAAAGTACGTGAATCCTCAAATCAATATTATTTAAAGAATAATATCTATAATCCACAA GCTGAAAGAGATAAACTCTCTCAATTACAAGCACAACAAGAAATTCAACAACAAGAACAA TTATTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAAAAAGATA AATACAATTTTTACAGGTTTAAATACAATAGAAGATACTGAATTTAAAAAAGTTGAACCA AAAGAAAAAAGAGAAAAACAAAATAATAATAATAATTATGGTGGATTTAGTAGTAATGGT GCATTAATTGGTAGTGGTGGTGGTAGTAGTTTTAGTAGTAGTAGTAGTAGTAGAAATAAT CATAAAAAGAATCAAAAATCATATACTGACCATAGAATGGAAGCAGAGAGATATATAAAG ATGAGAAATGCATGTTTTAAATCAGCAGCAGAAGCATATATGAAAAATAAACCAGCAGAT GCTAGAAGTTTATCAGAACAAGGTAAAAGATATGATGAATTGGCAAAAGAAGCAAATTTA TGTGCATCAAATCAAATCTTTATGGAATGTAATAGTAGAATTGGTGATACTCTTAGAATT GATTTACATGGTCTTCATGTCAATGAAGCATTAGATATGGTACAACAAGCATTAGATATT CATTCACAAGGTGAATATGATGGTAAAAAACCAAAATATATAAACTTTATCACTGGTCAA GGAAATCATTCTCAAGGTGGTATTGCAAGAATTAAACCTGCTCTTTTATCTTTTTTAAAA GAATGTAATATTAAAATAGNATAAAGG
sequence update	2001. 6. 9
Translated Amino Acid sequence	NNNSNSGGNNSPSFKSIIDEQDFISKIEPKNVATYVGKRGSYKKSPSPNTTSPSSLLSSP SLKSTDKEMSEREISESIIPLPLDYNKKMAQLKIQFPLIEEELLESLFLQTGYHFKDTMS YIYEVFPESKHNAKSVSNFANKVRESSNQYYLKNNIYNPQAERDKLSQLQAQQEIQQQEQ LFENIRFSKGKLNILPPKKINTIFTGLNTIEDTEFKKVEPKEKREKQNNNNNYGGFSSNG ALIGSGGGSSFSSSSSSRNNHKKNQKSYTDHRMEAERYIKMRNACFKSAAEAYMKNKPAD ARSLSEQGKRYDELAKEANLCASNQIFMECNSRIGDTLRIDLHGLHVNEALDMVQQALDI HSQGEYDGKKPKYINFITGQGNHSQGGIARIKPALLSFLKECNIKIX*r
Translated Amino Acid sequence (All Frames)	Frame A: NNNSNSGGNNSPSFKSIIDEQDFISKIEPKNVATYVGKRGSYKKSPSPNTTSPSSLLSSP SLKSTDKEMSEREISESIIPLPLDYNKKMAQLKIQFPLIEEELLESLFLQTGYHFKDTMS YIYEVFPESKHNAKSVSNFANKVRESSNQYYLKNNIYNPQAERDKLSQLQAQQEIQQQEQ LFENIRFSKGKLNILPPKKINTIFTGLNTIEDTEFKKVEPKEKREKQNNNNNYGGFSSNG ALIGSGGGSSFSSSSSSRNNHKKNQKSYTDHRMEAERYIKMRNACFKSAAEAYMKNKPAD ARSLSEQGKRYDELAKEANLCASNQIFMECNSRIGDTLRIDLHGLHVNEALDMVQQALDI HSQGEYDGKKPKYINFITGQGNHSQGGIARIKPALLSFLKECNIKIXr Frame B: iiivivvviihhhlnqllmnkilyqksnqkmlqlmlvnvvhirnhhlqiqhhhhhcyhhh hnqqikkcqkekfqnqlyhyhwiiikrwhnrfnshlkknyshysfkldiilriqv ifmkyfqrvnimlnqfqtlqikyvnpqiniiriisiihklkeinslnykhnkkfnnknn ylkildfqkvniyyhqkriqflqviqkilnlkklnqkkkeknkiiiiimvdlvvmv hlvvvvvvvlvvvvvveiiikriknhiltiewkqrdiremhvlnqqqkhikinqqm levyqnkvkdmmnwqkkqiyvhqikslwnvivelvilleliymvfmsmkhiwynkhif ihkvnmmvknqnitlslvkeiilkvvlqelnllfylfknvilkxk Frame C: ***wwftiiinytrfyiknrtkkccnlcwtwfieitiskynitiiiviiti ikinrrnvrkrnfrinytitigl*kdgtikdsipidrriirviipsnwisfgynel ylsisretcisfklckstilksilfkeylstskrtlsitsttrnsttrti ikyifkrikyittkkdkynfyrfkynrryikstkrkkrktk*lwwiwc inwwwwf****kskeskiiypngsreiykdekcmfissrsiyektsrc kfirtrkiigkrskfmciksnlygm*nwysnftwsscqsirygttsirys ftriwktkiyklyhwsrksfsrwyckntcsfiffkrmy*nxik
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC367 (CFC367Q) /CSM/CF/CFC3-C/CFC367Q.Seq.d/ 1279 0.0 CFE594 (CFE594Q) /CSM/CF/CFE5-D/CFE594Q.Seq.d/ 1265 0.0 SSG741 (SSG741Q) /CSM/SS/SSG7-B/SSG741Q.Seq.d/ 910 0.0 VFI757 (VFI757Q) /CSM/VF/VFI7-C/VFI757Q.Seq.d/ 880 0.0 SSE187 (SSE187Q) /CSM/SS/SSE1-D/SSE187Q.Seq.d/ 567 e-160 AFH695 (AFH695Q) /CSM/AF/AFH6-D/AFH695Q.Seq.d/ 50 8e-05 VFK540 (VFK540Q) /CSM/VF/VFK5-B/VFK540Q.Seq.d/ 48 3e-04 VSF750 (VSF750Q) /CSM/VS/VSF7-C/VSF750Q.Seq.d/ 44 0.005 VFH820 (VFH820Q) /CSM/VF/VFH8-A/VFH820Q.Seq.d/ 44 0.005 SSL489 (SSL489Q) /CSM/SS/SSL4-D/SSL489Q.Seq.d/ 44 0.005
own update	2004. 5.30
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116984\|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 46 7e-19 21 AL844505\|AL844505.1 Plasmodium falciparum chromosome 6. 62 1e-15 24 AC116960\|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 2e-15 19 AC116979\|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 40 2e-13 16 AL844509\|AL844509.1 Plasmodium falciparum chromosome 13. 50 1e-12 23 AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 44 1e-12 24 BX842643\|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete sequence; segment 2/4. 36 5e-11 25 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 38 8e-11 17 AC006281\|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, * SEQUENCING IN PROGRESS *, 2 unordered pieces. 50 1e-10 16 AC116982\|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 40 1e-10 13
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB037834_1(AB037834\|pid:none) Homo sapiens mRNA for KIAA1413 pro... 100 1e-19 (Q86UW6) RecName: Full=NEDD4-binding protein 2; Short=N... 100 1e-19 BC156351_1(BC156351\|pid:none) Synthetic construct Mus musculus c... 99 4e-19 BC125868_1(BC125868\|pid:none) Danio rerio zgc:153456, mRNA (cDNA... 96 3e-18 CU633900_659(CU633900\|pid:none) Podospora anserina genomic DNA c... 78 6e-13 AM269976_69(AM269976\|pid:none) Aspergillus niger contig An01c029... 72 3e-11 CP000498_365(CP000498\|pid:none) Pichia stipitis CBS 6054 chromos... 71 7e-11 FN392320_20(FN392320\|pid:none) Pichia pastoris GS115 chromosome ... 71 7e-11 (Q9UTP4) RecName: Full=Smr domain-containing protein C11H11.03c;... 71 7e-11 (Q08954) RecName: Full=Smr domain-containing protein YPL199C; &... 71 9e-11
protein update	2009. 6.30
PSORT	psg: 0.72 gvh: 0.33 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.27 mip: 0.00 nuc: 0.09 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 40.0 %: cytoplasmic 40.0 %: nuclear 16.0 %: cytoskeletal 4.0 %: mitochondrial >> prediction for CFC367 is cyt
5' end seq. ID	CFC367F
5' end seq.	>CFC367F.Seq AATAATAATAGTAATAGTGGTGGTAATAATTCACCATCATTTAAATCAATTATTGATGAA CAAGATTTTATATCAAAAATCGAACCAAAAAATGTTGCAACTTATGTTGGTAAACGTGGT TCATATAAGAAATCACCATCTCCAAATACAACATCACCATCATCATTGTTATCATCACCA TCATTAAAATCAACAGATAAAGAAATGTCAGAAAGAGAAATTTCAGAATCAATTATACCA TTACCATTGGATTATAATAAAAAGATGGCACAATTAAAGATTCAATTCCCATTGATTGAA GAAGAATTATTAGAGTCATTATTCCTTCAAACTGGATATCATTTTAAGGATACAATGAGT TATATTTATGAAGTATTTCCAGAGAGTAAACATAATGCTAAATCAGTTTCAAACTTTGCA AATAAAGTACGTGAATCCTCAAATCAATATTATTTAAAGAATAATATCTATAATCCACAA GCTGAAAGAGATAAACTCTCTCAATTACAAGCACAACAAGAAATTCAACAACAAGAACAA TTATTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAAAAA---- ------
Length of 5' end seq.	596
3' end seq. ID	CFC367Z
3' end seq.	>CFC367Z.Seq ----------TTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAA AAAGATAAATACAATTTTTACAGGTTTAAATACAATAGAAGATACTGAATTTAAAAAAGT TGAACCAAAAGAAAAAAGAGAAAAACAAAATAATAATAATAATTATGGTGGATTTAGTAG TAATGGTGCATTAATTGGTAGTGGTGGTGGTAGTAGTTTTAGTAGTAGTAGTAGTAGTAG AAATAATCATAAAAAGAATCAAAAATCATATACTGACCATAGAATGGAAGCAGAGAGATA TATAAAGATGAGAAATGCATGTTTTAAATCAGCAGCAGAAGCATATATGAAAAATAAACC AGCAGATGCTAGAAGTTTATCAGAACAAGGTAAAAGATATGATGAATTGGCAAAAGAAGC AAATTTATGTGCATCAAATCAAATCTTTATGGAATGTAATAGTAGAATTGGTGATACTCT TAGAATTGATTTACATGGTCTTCATGTCAATGAAGCATTAGATATGGTACAACAAGCATT AGATATTCATTCACAAGGTGAATATGATGGTAAAAAACCAAAATATATAAACTTTATCAC TGGTCAAGGAAATCATTCTCAAGGTGGTATTGCAAGAATTAAACCTGCTCTTTTATCTTT TTTAAAAGAATGTAATATTAAAATAGNATAAAGG
Length of 3' end seq.	684
Connected seq. ID	CFC367P
Connected seq.	>CFC367P.Seq AATAATAATAGTAATAGTGGTGGTAATAATTCACCATCATTTAAATCAATTATTGATGAA CAAGATTTTATATCAAAAATCGAACCAAAAAATGTTGCAACTTATGTTGGTAAACGTGGT TCATATAAGAAATCACCATCTCCAAATACAACATCACCATCATCATTGTTATCATCACCA TCATTAAAATCAACAGATAAAGAAATGTCAGAAAGAGAAATTTCAGAATCAATTATACCA TTACCATTGGATTATAATAAAAAGATGGCACAATTAAAGATTCAATTCCCATTGATTGAA GAAGAATTATTAGAGTCATTATTCCTTCAAACTGGATATCATTTTAAGGATACAATGAGT TATATTTATGAAGTATTTCCAGAGAGTAAACATAATGCTAAATCAGTTTCAAACTTTGCA AATAAAGTACGTGAATCCTCAAATCAATATTATTTAAAGAATAATATCTATAATCCACAA GCTGAAAGAGATAAACTCTCTCAATTACAAGCACAACAAGAAATTCAACAACAAGAACAA TTATTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAAAAA---- ------TTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAAAAAG ATAAATACAATTTTTACAGGTTTAAATACAATAGAAGATACTGAATTTAAAAAAGTTGAA CCAAAAGAAAAAAGAGAAAAACAAAATAATAATAATAATTATGGTGGATTTAGTAGTAAT GGTGCATTAATTGGTAGTGGTGGTGGTAGTAGTTTTAGTAGTAGTAGTAGTAGTAGAAAT AATCATAAAAAGAATCAAAAATCATATACTGACCATAGAATGGAAGCAGAGAGATATATA AAGATGAGAAATGCATGTTTTAAATCAGCAGCAGAAGCATATATGAAAAATAAACCAGCA GATGCTAGAAGTTTATCAGAACAAGGTAAAAGATATGATGAATTGGCAAAAGAAGCAAAT TTATGTGCATCAAATCAAATCTTTATGGAATGTAATAGTAGAATTGGTGATACTCTTAGA ATTGATTTACATGGTCTTCATGTCAATGAAGCATTAGATATGGTACAACAAGCATTAGAT ATTCATTCACAAGGTGAATATGATGGTAAAAAACCAAAATATATAAACTTTATCACTGGT CAAGGAAATCATTCTCAAGGTGGTATTGCAAGAATTAAACCTGCTCTTTTATCTTTTTTA AAAGAATGTAATATTAAAATAGNATAAAGG
Length of connected seq.	1280
Full length Seq ID	CFC367E
Full length Seq.	>CFC367E.Seq AATAATAATAGTAATAGTGGTGGTAATAATTCACCATCATTTAAATCAATTATTGATGAA CAAGATTTTATATCAAAAATCGAACCAAAAAATGTTGCAACTTATGTTGGTAAACGTGGT TCATATAAGAAATCACCATCTCCAAATACAACATCACCATCATCATTGTTATCATCACCA TCATTAAAATCAACAGATAAAGAAATGTCAGAAAGAGAAATTTCAGAATCAATTATACCA TTACCATTGGATTATAATAAAAAGATGGCACAATTAAAGATTCAATTCCCATTGATTGAA GAAGAATTATTAGAGTCATTATTCCTTCAAACTGGATATCATTTTAAGGATACAATGAGT TATATTTATGAAGTATTTCCAGAGAGTAAACATAATGCTAAATCAGTTTCAAACTTTGCA AATAAAGTACGTGAATCCTCAAATCAATATTATTTAAAGAATAATATCTATAATCCACAA GCTGAAAGAGATAAACTCTCTCAATTACAAGCACAACAAGAAATTCAACAACAAGAACAA TTATTTGAAAATATTAGATTTTCAAAAGGTAAATTAAATATATTACCACCAAAAAAGATA AATACAATTTTTACAGGTTTAAATACAATAGAAGATACTGAATTTAAAAAAGTTGAACCA AAAGAAAAAAGAGAAAAACAAAATAATAATAATAATTATGGTGGATTTAGTAGTAATGGT GCATTAATTGGTAGTGGTGGTGGTAGTAGTTTTAGTAGTAGTAGTAGTAGTAGAAATAAT CATAAAAAGAATCAAAAATCATATACTGACCATAGAATGGAAGCAGAGAGATATATAAAG ATGAGAAATGCATGTTTTAAATCAGCAGCAGAAGCATATATGAAAAATAAACCAGCAGAT GCTAGAAGTTTATCAGAACAAGGTAAAAGATATGATGAATTGGCAAAAGAAGCAAATTTA TGTGCATCAAATCAAATCTTTATGGAATGTAATAGTAGAATTGGTGATACTCTTAGAATT GATTTACATGGTCTTCATGTCAATGAAGCATTAGATATGGTACAACAAGCATTAGATATT CATTCACAAGGTGAATATGATGGTAAAAAACCAAAATATATAAACTTTATCACTGGTCAA GGAAATCATTCTCAAGGTGGTATTGCAAGAATTAAACCTGCTCTTTTATCTTTTTTAAAA GAATGTAATATTAAAATAGNATAAAGG
Length of full length seq.	1227

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas