>CFC364 (CFC364Q) /CSM/CF/CFC3-C/CFC364Q.Seq.d/
ATTTTAATATAACAATCTTCATGAAATTTAATATTAACTTTAACTTTTACAAATAGAATA
GATAACATCACCAAAAATAAAAAAAAATAAAAAAAAAATAAAAAAAANCTCAAAAATAAA
ATAATAATAATAATAATAAAAAAACTTTAAAATGAGTTCAAAGGATCAGATNTTGGAGAA
AGATAAAAAGGAGACAGATGATAATGGCAATAAAAAGACAACANCAACAACTTCATCATC
ATCATCATCATCATCATCATCAAAACCAAGATCAAATAAATTTGATAAAGTAATCATTAA
ATCAAATGGAGTTTGTTATATAACAGAGGGGGTAATTGGAAATGGCTCATTTGGNGTCGT
CACTCAAGCAATTGNGGCTGATACCAAAGAGGTTGTAGCAATAAAAAAGGTTTTNCAAGA
CCAAAGATNCAAGAATCGAGAATTACAAATCATGAAGATGTTAAATCATATAAATATAGT
TTCATTAAAAAATXXXXXXXXXXGGATCAACAAACTATACTACAACTATTGATGTTTGGT
CATTAGGATGTGTTTTGGCAGAATTATTATTGGGTCAACCGTTATTCCCTGGTGAGAATG
GTATTGACCAATTGGTAGAGATTATAAAGGTATTGGGTACACCAACCAAAGAACAAATTC
ATGCAATGAATCCATATTATACCTCATTTAAATTCCCAGAGATCAAAGCAAACCCATGGC
CAAGAGTATTCAAAGCTAAGGATGTACCGGCCGAATCAATTGATTTAATCTCAAAAATCT
TACTTTATGATCCATCCTCAAGATTAAAGCCAGTTGAAATTTGTGCACATCCATTCTTTG
ATGAATTAAGAGATCCAAAGACATGTCTTCCAGATGGTAAACCTTTACCACCCCTCTTCA
ACTTTACAATCGCAGAACAAACTTCAATCGGTCCAAAACTAGCCAAAACATTAATTCCAT
CACATGCTATGAATCAAATTGAATTGCCATCACCTTTATTCCCAAATTTGGCAATCTCTT
CTTCTAATCAATCCTCCTCTTCAAATTCAAATGCAAATGTGTCATCAAATTTAAATTCTC
ATTCTGCTTCACCTTCAACTACCTCCTCCTCTTCTTCTACTCCAAATTCAATTCCTGTTC
AATCACCTTCTACAACCAACACTACTTCATCAACAACTAACAACACAACCACAACTACAA
CAACAACAACTACTTCAAATCATTAAAACTATAAACCT

f*ynnlhei*y*l*llqie*itspkikknkkkikkxskik******KNFKMSSKDQXLEK
DKKETDDNGNKKTTXTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYITEGVIGNGSFGVV
TQAIXADTKEVVAIKKVXQDQRXKNRELQIMKMLNHINIVSLKN---

---GSTNYTTTIDVWSLGCVLAELLLGQPLFPGENGIDQLVEIIKVLGTPTKEQIHAMNP
YYTSFKFPEIKANPWPRVFKAKDVPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRD
PKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHAMNQIELPSPLFPNLAISSSNQS
SSSNSNANVSSNLNSHSASPSTTSSSSSTPNSIPVQSPSTTNTTSSTTNNTTTTTTTTTT
SNH*nykp

Frame A:
ili*qss*nliltltftnridnitknkkk*kknkkxlknkiiiiiikkl*nefkgsdxge
r*kgdr**wq*kdnxnnfiiiiiiiiiktkik*i**snh*ikwsllynrggnwkwliwxr
hssnxg*yqrgcsnkkgfxrpkxqesritnhedvksykysfikk---

---GSTNYTTTIDVWSLGCVLAELLLGQPLFPGENGIDQLVEIIKVLGTPTKEQIHAMNP
YYTSFKFPEIKANPWPRVFKAKDVPAESIDLISKILLYDPSSRLKPVEICAHPFFDELRD
PKTCLPDGKPLPPLFNFTIAEQTSIGPKLAKTLIPSHAMNQIELPSPLFPNLAISSSNQS
SSSNSNANVSSNLNSHSASPSTTSSSSSTPNSIPVQSPSTTNTTSSTTNNTTTTTTTTTT
SNH*nykp

Frame B:
f*ynnlhei*y*l*llqie*itspkikknkkkikkxskik******KNFKMSSKDQXLEK
DKKETDDNGNKKTTXTTSSSSSSSSSSKPRSNKFDKVIIKSNGVCYITEGVIGNGSFGVV
TQAIXADTKEVVAIKKVXQDQRXKNRELQIMKMLNHINIVSLKN---

---dqqtilqllmfgh*dvfwqnyywvnryslvrmvltnw*rl*rywvhqpknkfmq*ih
iiphlnsqrskqthgqeysklrmyrpnqli*sqksyfmihpqd*sqlkfvhihslmn*ei
qrhvfqmvnlyhpsstlqsqnklqsvqn*pkh*fhhml*iklnchhlysqiwqslllinp
plqiqmqmchqi*ilillhlqlpppllllqiqflfnhllqptllhqqlttqpqlqqqqll
qiiktin

Frame C:
fnitifmkfninfnfyk*nr*hhqk*kkikkk*kkxqk*nnnnnnkktlk*vqrirxwrk
ikrrqmimaikrqxqqlhhhhhhhhhqnqdqinlik*slnqmefvi*qrg*lemahlxss
lkqlxlipkrl*q*krfxktkdxrienyks*rc*ii*i*fh*k---

---inklyyny*clvirmcfgriiigstvipw*ewy*pigrdykgigytnqrtnscnesi
lyli*iprdqskpmaksiqs*gctgrin*fnlknltl*silkikas*nlctsil**ikrs
kdmssrw*tfttplqlynrrtnfnrsktsqninsitcyesn*iaitfipkfgnlff*sil
lfkfkckcvikfkfsfcftfnylllffyskfnscsitfynqhyfinn*qhnhnynnnnyf
kslkl*t

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC364 (CFC364Q) /CSM/CF/CFC3-C/CFC364Q.Seq.d/                       1717   0.0
CFA794 (CFA794Q) /CSM/CF/CFA7-D/CFA794Q.Seq.d/                       1306   0.0
CFG633 (CFG633Q) /CSM/CF/CFG6-B/CFG633Q.Seq.d/                       1275   0.0
CHA261 (CHA261Q) /CSM/CH/CHA2-C/CHA261Q.Seq.d/                       1199   0.0
AFH493 (AFH493Q) /CSM/AF/AFH4-D/AFH493Q.Seq.d/                       1170   0.0
SSL104 (SSL104Q) /CSM/SS/SSL1-A/SSL104Q.Seq.d/                       1160   0.0
CHB117 (CHB117Q) /CSM/CH/CHB1-A/CHB117Q.Seq.d/                       1144   0.0
CFC263 (CFC263Q) /CSM/CF/CFC2-C/CFC263Q.Seq.d/                       1140   0.0
SFD633 (SFD633Q) /CSM/SF/SFD6-B/SFD633Q.Seq.d/                       1043   0.0
AFH106 (AFH106Q) /CSM/AF/AFH1-A/AFH106Q.Seq.d/                        912   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L34674|L34674.2 Dictyostelium discoideum glycogen synthase kinase 3 mRNA, complete cds.  1322   0.0    3
AC116920|AC116920.3 Dictyostelium discoideum chromosome 2 map 4415041-4520361 strain AX4, complete sequence.  1322   0.0    9
BJ552082|BJ552082.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah47d12, 3' mRNA sequence.    44   3e-07  3
BJ552583|BJ552583.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah55o11, 3' mRNA sequence.    44   3e-07  3
AV927751|AV927751.1 Hordeum vulgare subsp. vulgare cv.Haruna Nijo cDNA clone:basd3i06, 3' mRNA sequence.    44   3e-07  3
BD365141|BD365141.1 Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof.    44   3e-07  3
BD365143|BD365143.1 Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof.    44   3e-07  3
BD365137|BD365137.1 Newly found single nucleotide polymorphisms (SNPs) on genes and use thereof.    44   3e-07  3
BJ552379|BJ552379.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah56e23, 3' mRNA sequence.    44   4e-07  3
BG239901|BG239901.1 OV1_30_D10.g1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence.    46   1e-06  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A55476(A55476)protein kinase (EC 2.7.1.37) gskA - slime mold  (D...   353   5e-96
EF677494_1(EF677494|pid:none) Picea sitchensis clone WS02769_M19...   220   7e-56
AC096856_19(AC096856|pid:none) Oryza sativa chromosome 3 BAC OSJ...   217   8e-55
EF085206_1(EF085206|pid:none) Picea sitchensis clone WS02728_K01...   216   1e-54
AY339069_1(AY339069|pid:none) Physcomitrella patens shaggy-relat...   215   2e-54
T03601(T03601) shaggy protein kinase (EC 2.7.1.-) 6 - common tob...   215   3e-54
AJ224163_1(AJ224163|pid:none) Nicotiana tabacum mRNA for shaggy-...   214   4e-54
AY339070_1(AY339070|pid:none) Physcomitrella patens shaggy-relat...   214   5e-54
AB032265_1(AB032265|pid:none) Danio rerio mRNA for glycogen synt...   213   1e-53
AC079029_17(AC079029|pid:none) Oryza sativa chromosome 10 BAC OS...   213   1e-53

 psg: 0.29  gvh: 0.55  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFC364 is cyt

>CFC364F.Seq
ATTTTAATATAACAATCTTCATGAAATTTAATATTAACTTTAACTTTTACAAATAGAATA
GATAACATCACCAAAAATAAAAAAAAATAAAAAAAAAATAAAAAAAANCTCAAAAATAAA
ATAATAATAATAATAATAAAAAAACTTTAAAATGAGTTCAAAGGATCAGATNTTGGAGAA
AGATAAAAAGGAGACAGATGATAATGGCAATAAAAAGACAACANCAACAACTTCATCATC
ATCATCATCATCATCATCATCAAAACCAAGATCAAATAAATTTGATAAAGTAATCATTAA
ATCAAATGGAGTTTGTTATATAACAGAGGGGGTAATTGGAAATGGCTCATTTGGNGTCGT
CACTCAAGCAATTGNGGCTGATACCAAAGAGGTTGTAGCAATAAAAAAGGTTTTNCAAGA
CCAAAGATNCAAGAATCGAGAATTACAAATCATGAAGATGTTAAATCATATAAATATAGT
TTCATTAAAAAAT----------

>CFC364Z.Seq
----------GGATCAACAAACTATACTACAACTATTGATGTTTGGTCATTAGGATGTGT
TTTGGCAGAATTATTATTGGGTCAACCGTTATTCCCTGGTGAGAATGGTATTGACCAATT
GGTAGAGATTATAAAGGTATTGGGTACACCAACCAAAGAACAAATTCATGCAATGAATCC
ATATTATACCTCATTTAAATTCCCAGAGATCAAAGCAAACCCATGGCCAAGAGTATTCAA
AGCTAAGGATGTACCGGCCGAATCAATTGATTTAATCTCAAAAATCTTACTTTATGATCC
ATCCTCAAGATTAAAGCCAGTTGAAATTTGTGCACATCCATTCTTTGATGAATTAAGAGA
TCCAAAGACATGTCTTCCAGATGGTAAACCTTTACCACCCCTCTTCAACTTTACAATCGC
AGAACAAACTTCAATCGGTCCAAAACTAGCCAAAACATTAATTCCATCACATGCTATGAA
TCAAATTGAATTGCCATCACCTTTATTCCCAAATTTGGCAATCTCTTCTTCTAATCAATC
CTCCTCTTCAAATTCAAATGCAAATGTGTCATCAAATTTAAATTCTCATTCTGCTTCACC
TTCAACTACCTCCTCCTCTTCTTCTACTCCAAATTCAATTCCTGTTCAATCACCTTCTAC
AACCAACACTACTTCATCAACAACTAACAACACAACCACAACTACAACAACAACAACTAC
TTCAAATCATTAAAACTATAAACCT

>CFC364P.Seq
ATTTTAATATAACAATCTTCATGAAATTTAATATTAACTTTAACTTTTACAAATAGAATA
GATAACATCACCAAAAATAAAAAAAAATAAAAAAAAAATAAAAAAAANCTCAAAAATAAA
ATAATAATAATAATAATAAAAAAACTTTAAAATGAGTTCAAAGGATCAGATNTTGGAGAA
AGATAAAAAGGAGACAGATGATAATGGCAATAAAAAGACAACANCAACAACTTCATCATC
ATCATCATCATCATCATCATCAAAACCAAGATCAAATAAATTTGATAAAGTAATCATTAA
ATCAAATGGAGTTTGTTATATAACAGAGGGGGTAATTGGAAATGGCTCATTTGGNGTCGT
CACTCAAGCAATTGNGGCTGATACCAAAGAGGTTGTAGCAATAAAAAAGGTTTTNCAAGA
CCAAAGATNCAAGAATCGAGAATTACAAATCATGAAGATGTTAAATCATATAAATATAGT
TTCATTAAAAAAT----------GGATCAACAAACTATACTACAACTATTGATGTTTGGT
CATTAGGATGTGTTTTGGCAGAATTATTATTGGGTCAACCGTTATTCCCTGGTGAGAATG
GTATTGACCAATTGGTAGAGATTATAAAGGTATTGGGTACACCAACCAAAGAACAAATTC
ATGCAATGAATCCATATTATACCTCATTTAAATTCCCAGAGATCAAAGCAAACCCATGGC
CAAGAGTATTCAAAGCTAAGGATGTACCGGCCGAATCAATTGATTTAATCTCAAAAATCT
TACTTTATGATCCATCCTCAAGATTAAAGCCAGTTGAAATTTGTGCACATCCATTCTTTG
ATGAATTAAGAGATCCAAAGACATGTCTTCCAGATGGTAAACCTTTACCACCCCTCTTCA
ACTTTACAATCGCAGAACAAACTTCAATCGGTCCAAAACTAGCCAAAACATTAATTCCAT
CACATGCTATGAATCAAATTGAATTGCCATCACCTTTATTCCCAAATTTGGCAATCTCTT
CTTCTAATCAATCCTCCTCTTCAAATTCAAATGCAAATGTGTCATCAAATTTAAATTCTC
ATTCTGCTTCACCTTCAACTACCTCCTCCTCTTCTTCTACTCCAAATTCAATTCCTGTTC
AATCACCTTCTACAACCAACACTACTTCATCAACAACTAACAACACAACCACAACTACAA
CAACAACAACTACTTCAAATCATTAAAACTATAAACCT