>CFC347 (CFC347Q) /CSM/CF/CFC3-B/CFC347Q.Seq.d/
CATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGT
CTGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAG
CAATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTA
TTAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCA
CTGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATT
TACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGA
ATGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTG
ATGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGGGGTTCATCATGTGGTGAAA
TCACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTCXXXXXXXXX
XAGCTCACAAGAATCAAATTACCTCAATTAAAATCAATGGTGATCAACTCATTACTTGCG
CTATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTG
GTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAA
TGAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGG
AACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGA
TTCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATC
GTGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTT
CAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACC
ATACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTT
CACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAG
TTAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATAAATTTT
CTCTGCAGGTAATGAAGGTGCTATTAAAATTNGAATGTATCAAATTAAAAAAAAATT

LIFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIII
RNVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLN
GAILDIAWTSDNQRLVVVGDGKERFGAAILWDRGSSCGEITGHSKMILSCDIKSTR---

---AHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVVVA
VSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHTLD
NHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKFVA
SASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNKFSLQVMKVLLKXECIKLKK
N

Frame A:
h*flylyiylfi*inytl*cl*l*killhqhqqllvvnq*qlmvtqrvkilymqvvavll
lem*riqw*qiftmnihvkpllqsmhqvviilqvvmfkviyvfgihykrnis*kqltky*
mvqslilhghqiinv*l*lvmvkrdlvqpsfgigvhhvvkslvtqr*fslvtlnqlv---

---ssqesnyln*nqw*sthylryg**c*nlkyl*knlw*kywcr*ssssccflw*ccrc
clnenhlch*rw*nrftncchlgtnlcchq*y*sfsrw*r*qdsrfhsqw*qfncqsyfr
*sswcyyrsfiltmw*ifsfrlfks*syrlew*rsqi*rlg*pyrsy*ccrlv**f*icc
lcftrfsnlhlec*ksnrftsss*klsfrwcq*cylwfkq*ifsagnegaikixmyqikk
k

Frame B:
infciyifiylyk*tthynvcnfkkyyctntsnysw*issn*w*pkg*kycickw*qyyy
*kckesngsryll*tsmsnhcckvctkw*lyckw*csr*ftylgyitkgtylksnlqsie
wcnp*ycmdir*stfscsw*w*reiwcshplg*gfimw*nhwslkddsll*h*ins---

---AHKNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQAVAFSGDVVVA
VSMKTIYVIKGGKIVSQTAATWEPTSVAINDTEVSVGGKDNKIHVFTLSGNNLTASHTLD
NHRGAITDLSYSPCGKYLASGCSNREVIVWSGKEAKSKGWVNHTARINAVAWSNDSKFVA
SASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNKFSLQVMKVLLKXECIKLKK
N

Frame C:
LIFVFIYLFIYINKLHIIMSVTLKNIIAPTPATTRGKSVAINGDPKGENIVYASGSSIII
RNVKNPMVADIYYEHPCQTTVAKYAPSGNYIASGDVQGNLRIWDTLQKEHILKATYKVLN
GAILDIAWTSDNQRLVVVGDGKERFGAAILWDRGSSCGEITGHSKMILSCDIKSTR---

---ltriklpqlksmvinsllalwmivlksqvslkkpmvkvlv*ivqlklllslvmlsll
sq*kpfmslkvvksfhkllplgnqpllpsmilkfqsvvkitrftfslsvvti*lpvil*i
iivvllpifhthhvvni*lqvvqivklsfgvvkkpnlkvgltiplvlmlslglmilnllp
llhsilkftfgmlkiqplhqfklktli*vvsmmlfmvqtinflcr**rcy*nxnvsn*kk
i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC347 (CFC347Q) /CSM/CF/CFC3-B/CFC347Q.Seq.d/                       2290   0.0
SFH724 (SFH724Q) /CSM/SF/SFH7-A/SFH724Q.Seq.d/                       1336   0.0
CHB782 (CHB782Q) /CSM/CH/CHB7-D/CHB782Q.Seq.d/                       1336   0.0
CFJ887 (CFJ887Q) /CSM/CF/CFJ8-D/CFJ887Q.Seq.d/                       1336   0.0
CFJ140 (CFJ140Q) /CSM/CF/CFJ1-B/CFJ140Q.Seq.d/                       1336   0.0
CHD430 (CHD430Q) /CSM/CH/CHD4-B/CHD430Q.Seq.d/                       1330   0.0
CHB378 (CHB378Q) /CSM/CH/CHB3-D/CHB378Q.Seq.d/                       1330   0.0
CFF366 (CFF366Q) /CSM/CF/CFF3-C/CFF366Q.Seq.d/                       1330   0.0
CHL844 (CHL844Q) /CSM/CH/CHL8-B/CHL844Q.Seq.d/                       1320   0.0
SFI277 (SFI277Q) /CSM/SF/SFI2-D/SFI277Q.Seq.d/                       1312   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U36936|U36936.1 Dictyostelium discoideum WD40 repeat protein 2 mRNA, compete cds.  1092   0.0    3
AF045085|AF045085.1 Drosophila subsaltans cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.045  3
BX572094|BX572094.1 Prochlorococcus marinus MED4 complete genome; segment 5/5.    34   0.14   12
AF474077|AF474077.1 Drosophila ananassae cytochrome oxidase II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    34   0.16   3
AF045084|AF045084.1 Drosophila sturtevanti 14043-0871.9 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.31   2
AF045083|AF045083.1 Drosophila sturtevanti 14043-0871.2 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.31   2
AF045082|AF045082.1 Drosophila sturtevanti 14045-0901.0 cytochrome oxidase II (COII) gene, mitochondrial gene encoding mitochondrial protein, complete cds.    38   0.31   2
AF461281|AF461281.1 Drosophila eugracilis cytochrome oxidase II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    38   0.65   2
AC127566|AC127566.3 Mus musculus BAC clone RP24-187F3 from chromosome 5, complete sequence.    38   0.77   7
AY162976|AY162976.1 Drosophila polymorpha isolate H48 cytochrome oxidase subunit II (COII) gene, partial cds; mitochondrial gene for mitochondrial product.    38   0.79   2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U36936_1(U36936|pid:none) Dictyostelium discoideum WD40 repeat p...   426   e-119
(P90587) RecName: Full=66 kDa stress protein; AltName: Full=p66;...   234   6e-60
BT045059_1(BT045059|pid:none) Salmo salar clone ssal-rgf-510-334...   205   3e-51
AY394939_1(AY394939|pid:none) Danio rerio clone RK046A1C09 WD re...   202   2e-50
AK004644_1(AK004644|pid:none) Mus musculus adult male lung cDNA,...   200   1e-49
AK004858_1(AK004858|pid:none) Mus musculus adult male liver cDNA...   200   1e-49
BC049117_1(BC049117|pid:none) Mus musculus, WD repeat domain 1, ...   199   1e-49
AK165225_1(AK165225|pid:none) Mus musculus 6 days neonate spleen...   199   2e-49
(O93277) RecName: Full=WD repeat-containing protein 1; AltName: ...   197   5e-49
(O75083) RecName: Full=WD repeat-containing protein 1; AltName: ...   197   6e-49

 psg: 0.98  gvh: 0.37  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.30  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 1.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.01  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFC347 is cyt

>CFC347F.Seq
CATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGT
CTGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAG
CAATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTA
TTAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCA
CTGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATT
TACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGA
ATGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTG
ATGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGGGGTTCATCATGTGGTGAAA
TCACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTC---------
-

>CFC347Z.Seq
----------AGCTCACAAGAATCAAATTACCTCAATTAAAATCAATGGTGATCAACTCA
TTACTTGCGCTATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTG
AAAGTATTGGTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTG
CTGTCTCAATGAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTG
CCACTTGGGAACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAG
ATAACAAGATTCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAG
ATAATCATCGTGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTT
CAGGTTGTTCAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTT
GGGTTAACCATACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTG
CCTCTGCTTCACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCAC
CAGTTCAAGTTAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACA
ATAAATTTTCTCTGCAGGTAATGAAGGTGCTATTAAAATTNGAATGTATCAAATTAAAAA
AAAATT

>CFC347P.Seq
CATTAATTTTTGTATTTATATATTTATTTATTTATATAAATAAACTACACATTATAATGT
CTGTAACTTTAAAAAATATTATTGCACCAACACCAGCAACTACTCGTGGTAAATCAGTAG
CAATTAATGGTGACCCAAAGGGTGAAAATATTGTATATGCAAGTGGTAGCAGTATTATTA
TTAGAAATGTAAAGAATCCAATGGTAGCAGATATTTACTATGAACATCCATGTCAAACCA
CTGTTGCAAAGTATGCACCAAGTGGTAATTATATTGCAAGTGGTGATGTTCAAGGTAATT
TACGTATTTGGGATACATTACAAAAGGAACATATCTTAAAAGCAACTTACAAAGTATTGA
ATGGTGCAATCCTTGATATTGCATGGACATCAGATAATCAACGTTTAGTTGTAGTTGGTG
ATGGTAAAGAGAGATTTGGTGCAGCCATCCTTTGGGATAGGGGTTCATCATGTGGTGAAA
TCACTGGTCACTCAAAGATGATTCTCTCTTGTGACATTAAATCAACTCGTC---------
-AGCTCACAAGAATCAAATTACCTCAATTAAAATCAATGGTGATCAACTCATTACTTGCG
CTATGGATGATAGTGTTAAAATCTCAAGTATCTCTAAAAAAACCTATGGTGAAAGTATTG
GTGTAGATAGTCCAGCTCAAGCTGTTGCTTTCTCTGGTGATGTTGTCGTTGCTGTCTCAA
TGAAAACCATTTATGTCATTAAAGGTGGTAAAATCGTTTCACAAACTGCTGCCACTTGGG
AACCAACCTCTGTTGCCATCAATGATACTGAAGTTTCAGTCGGTGGTAAAGATAACAAGA
TTCACGTTTTCACTCTCAGTGGTAACAATTTAACTGCCAGTCATACTTTAGATAATCATC
GTGGTGCTATTACCGATCTTTCATACTCACCATGTGGTAAATATTTAGCTTCAGGTTGTT
CAAATCGTGAAGTTATCGTTTGGAGTGGTAAAGAAGCCAAATCTAAAGGTTGGGTTAACC
ATACCGCTCGTATTAATGCTGTCGCTTGGTCTAATGATTCTAAATTTGTTGCCTCTGCTT
CACTCGATTCTCAAATTTACATTTGGAATGTTGAAAATCCAACCGCTTCACCAGTTCAAG
TTAAAAACTCTCATTTAGGTGGTGTCAATGATGTTATTTATGGTTCAAACAATAAATTTT
CTCTGCAGGTAATGAAGGTGCTATTAAAATTNGAATGTATCAAATTAAAAAAAAATT