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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC346
Library CF
(Link to library)
Clone ID CFC346
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1
Original site URL
Representative seq. ID CFC346Z
(Link to Original site)
Representative DNA sequence 
>CFC346 (CFC346Q) /CSM/CF/CFC3-B/CFC346Q.Seq.d/
XXXXXXXXXXATTGTTGTACCTAANCNTCCATTTAATTTCAAAACAGCCAATTTTGAAGC
GAGTTCTGAAGTTCCTTGTTCAGTGANNGCTGGTAAATCTTTATAGTTTAAAACCATATC
AGCTGGTGGTGGATTGATTTTATCCCAATCGATNACNTTCTTTCTATTCTTTAAGAAACG
GG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---VVPXXPFNFKTANFEASSEVPCSVXAGKSL*fktisaggglilsqsxtfflffkkr
Translated Amino Acid sequence (All Frames) 
Frame A:
---llylxxhliskqpilkrvlkflvq*xlvnlyslkpyqlvvd*fypnrxxsfyslrng


Frame B:
---cct*xsi*fqnsqf*sef*sslfsxxw*ifiv*nhiswwwidfipidxxlsil*et


Frame C:
---VVPXXPFNFKTANFEASSEVPCSVXAGKSL*fktisaggglilsqsxtfflffkkr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC346 (CFC346Q) /CSM/CF/CFC3-B/CFC346Q.Seq.d/                        305   1e-82
VSJ366 (VSJ366Q) /CSM/VS/VSJ3-C/VSJ366Q.Seq.d/                        297   3e-80
VFK661 (VFK661Q) /CSM/VF/VFK6-C/VFK661Q.Seq.d/                        297   3e-80
VFJ586 (VFJ586Q) /CSM/VF/VFJ5-D/VFJ586Q.Seq.d/                        297   3e-80
VFA701 (VFA701Q) /CSM/VF/VFA7-A/VFA701Q.Seq.d/                        297   3e-80
SSG303 (SSG303Q) /CSM/SS/SSG3-A/SSG303Q.Seq.d/                        297   3e-80
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                        297   3e-80
SFL334 (SFL334Q) /CSM/SF/SFL3-B/SFL334Q.Seq.d/                        297   3e-80
SFK481 (SFK481Q) /CSM/SF/SFK4-D/SFK481Q.Seq.d/                        297   3e-80
SFK207 (SFK207Q) /CSM/SF/SFK2-A/SFK207Q.Seq.d/                        297   3e-80
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.   297   3e-77  1
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.          40   0.012  2
CG812708|CG812708.1 SOYDK89TV LargeInsertSoybeanGenLib Glycine max genomic clone H23F15:MTP11P9, genomic survey sequence.    34   0.040  3
AC079462|AC079462.2 Homo sapiens X PAC GS1-554N22 (Roswell Park Cancer Institute Human PAC Library) complete sequence.    36   0.13   4
CE607963|CE607963.1 tigr-gss-dog-17000312957217 Dog Library Canis familiaris genomic, genomic survey sequence.    40   0.27   2
U40455|U40455.1 Human chromosome X cosmid, clones 196B12, 9H11 and 43H9, repeat units and sequence tagged sites.    36   0.29   4
AC120624|AC120624.4 Rattus norvegicus clone CH230-25E7, WORKING DRAFT SEQUENCE, 2 unordered pieces.    34   0.42   6
AC093213|AC093213.2 Homo sapiens chromosome 5 clone CTD-2051A5, WORKING DRAFT SEQUENCE, 2 unordered pieces.    36   0.53   4
BU140933|BU140933.1 603137190F1 CSEQCHL25 Gallus gallus cDNA clone ChEST123c23 5', mRNA sequence.    44   0.65   1
AC101722|AC101722.6 Mus musculus chromosome 5 clone RP23-310L24 map 5, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    30   2.0    7
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   105   4e-22
CR382127_82(CR382127|pid:none) Yarrowia lipolytica strain CLIB12...    52   5e-06
AL590443_27(AL590443|pid:none) chromosome III of strain GB-M1 of...    52   6e-06
AY850189_1(AY850189|pid:none) Emericella nidulans UDP-glucose py...    49   5e-05
AF249880_1(AF249880|pid:none) Oryza sativa subsp. indica UDP-glu...    49   5e-05
AE017343_372(AE017343|pid:none) Cryptococcus neoformans var. neo...    49   5e-05
EU128494_1(EU128494|pid:none) Phoma herbarum UDP-glucose pyropho...    49   7e-05
AF542010_1(AF542010|pid:none) Griffithsia japonica UDP glucose p...    48   9e-05
(Q9SDX3) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...    48   1e-04
BT063794_1(BT063794|pid:none) Zea mays full-length cDNA clone ZM...    48   1e-04
protein update 2009. 5.12
PSORT 

 psg: 0.72  gvh: 0.38  alm: 0.56  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for CFC346 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID CFC346Z
3' end seq. 
>CFC346Z.Seq
----------ATTGTTGTACCTAANCNTCCATTTAATTTCAAAACAGCCAATTTTGAAGC
GAGTTCTGAAGTTCCTTGTTCAGTGANNGCTGGTAAATCTTTATAGTTTAAAACCATATC
AGCTGGTGGTGGATTGATTTTATCCCAATCGATNACNTTCTTTCTATTCTTTAAGAAACG
GG
Length of 3' end seq. 172
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -