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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC339
Library CF
(Link to library)
Clone ID CFC339
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13924-1
Original site URL
Representative seq. ID CFC339P
(Link to Original site)
Representative DNA sequence 
>CFC339 (CFC339Q) /CSM/CF/CFC3-B/CFC339Q.Seq.d/
AAATTATTAATTTACAATAATAACAAAGATGACAAGCAATACAACTGAAATACCCTATCA
TTTTTTACCATATGTAAGAATTCAATATGATTGGCAATTGGCATATAAACAAGATTCAGA
TAATTGTTGGGTTGCATATCAAAAAGATTTAAAAAATACAATTCATGGATCAGTTCATTC
TACCAAAATTGATGAAAATAATTTTAAATTTGAATCTGATTATGGATTTAAATTAACACC
AAATAAAGAAAATAAAAATAATATTAGAGTTGAAAATGATAAATATAGTATTGAAATATA
TGCACCAGAGAAACAGTTAAAAGTTTCAGGTGGAAAGAAAAGAATAACATCAATGGGTGT
TAGTCATTTAGGAGAGTTGGGTGTATATGGTAGTACTGATGGTACATTGGAAGTATTTGA
AACTGGTGATGGTCAAATTAGAAGAAAATTAGATGGTCATGTTGGTGATGTTGATTTGGC
AATGTTTTTCCCAAGTGGTAGGGTTATACTAAGTGGTTCCTCTGATAGTAGATTAAAGAT
TTGGGATGCTATAGAAGGCACATGCGCCTCTACATTGGTCGGAXXXXXXXXXXGGACACA
TCGGTGGTATAACATCGGCATCATTGGTTGATCGTGGTAGAAATTTAGTATCATGTTCAC
GTGATGGTACAAGTAAATTATGGGATATACCAACATCATCGATCATTTCAAATTTAACAA
AATTATCAAGACCAATTAATGATAGTTTTATAGCATCATCATTACTTGACTCAATTCCAA
CTACCACCACTACAAATAGTAATGATAATAATAAAGTTGATGAAAGAGAAGTGGGTACAG
ATGGTAAAACATTGATTATAGCGGCAGAAGAAGGGTTTTTACAAGCAATTGATTTGAGAT
CAAAGAATATGATATCACAAATGAATGTTGTACAATCTGGTGAAAAGAGTACAAGATCAG
TTGCATTCAATGCTTGTCATGTACATAAGAATTATATAATTGGTGGTGACCATAATGGTT
CCATTTACTTTTGGGATAAGAGAAATTTAAATTCACCTTTTTGTAGATTACAATTTACAA
ACTCACCAATTCATCATATAAAGGCAAATTCATCCAATTCAAAGATTGCAAATTCAATTT
GGGTTACCTCTGGTGATGGTTGTTGTTTCTTGTTGGATTTAGATAAAAATCAAATCATAA
CCTCTTTATCTGGTATTGATACTGATGTTGTAACTTCTTTTAATATCGTTGGAAATCAAG
CTTATTTAACTTCCAGAGATTCAATCATTAGATGTTATAATATTTATTAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ny*FTIITKMTSNTTEIPYHFLPYVRIQYDWQLAYKQDSDNCWVAYQKDLKNTIHGSVHS
TKIDENNFKFESDYGFKLTPNKENKNNIRVENDKYSIEIYAPEKQLKVSGGKKRITSMGV
SHLGELGVYGSTDGTLEVFETGDGQIRRKLDGHVGDVDLAMFFPSGRVILSGSSDSRLKI
WDAIEGTCASTLVG---

---GHIGGITSASLVDRGRNLVSCSRDGTSKLWDIPTSSIISNLTKLSRPINDSFIASSL
LDSIPTTTTTNSNDNNKVDEREVGTDGKTLIIAAEEGFLQAIDLRSKNMISQMNVVQSGE
KSTRSVAFNACHVHKNYIIGGDHNGSIYFWDKRNLNSPFCRLQFTNSPIHHIKANSSNSK
IANSIWVTSGDGCCFLLDLDKNQIITSLSGIDTDVVTSFNIVGNQAYLTSRDSIIRCYNI
Y*
Translated Amino Acid sequence (All Frames) 
Frame A:
klliynnnkddkqyn*ntlsffticknsi*laigi*trfr*llgciskrfkkynswissf
yqn**k*f*i*i*lwi*intk*rk*k*y*s*k**i*y*nictretvksfrwkeknningc
*sfrrvgciw*y*wyigsi*nw*wsn*kkirwscw*c*fgnvfpkw*gytkwfl***ikd
lgcyrrhmrlyigr---

---GHIGGITSASLVDRGRNLVSCSRDGTSKLWDIPTSSIISNLTKLSRPINDSFIASSL
LDSIPTTTTTNSNDNNKVDEREVGTDGKTLIIAAEEGFLQAIDLRSKNMISQMNVVQSGE
KSTRSVAFNACHVHKNYIIGGDHNGSIYFWDKRNLNSPFCRLQFTNSPIHHIKANSSNSK
IANSIWVTSGDGCCFLLDLDKNQIITSLSGIDTDVVTSFNIVGNQAYLTSRDSIIRCYNI
Y*

Frame B:
ny*FTIITKMTSNTTEIPYHFLPYVRIQYDWQLAYKQDSDNCWVAYQKDLKNTIHGSVHS
TKIDENNFKFESDYGFKLTPNKENKNNIRVENDKYSIEIYAPEKQLKVSGGKKRITSMGV
SHLGELGVYGSTDGTLEVFETGDGQIRRKLDGHVGDVDLAMFFPSGRVILSGSSDSRLKI
WDAIEGTCASTLVG---

---dtsvv*hrhhwlivvei*yhvhvmvqvnygiyqhhrsfqi*qnyqdqlmivl*hhhy
ltqfqlpplqivmiiiklmkekwvqmvkh*l*rqkkgfykqli*dqri*yhk*mlynlvk
rvqdqlhsmlvmyirii*lvvtimvpftfgirei*ihlfvdynlqthqfii*rqihpiqr
lqiqfglplvmvvvscwi*ikiks*plylvlilml*lllisleikli*lpeiqsldviif
ik

Frame C:
iinlq**qr*qaiqlkypiifyhm*efnmignwhinkiqiivglhikki*kiqfmdqfil
pklmkiilnlnlimdln*hqikkikiilelkminivlkymhqrns*kfqverke*hqwvl
vi*eswvymvvlmvhwkylklvmvkleen*mvmlvmliwqcfsqvvgly*vvplivd*rf
gml*kahaplhws---

---thrwynigiig*sw*kfsimft*wyk*imgytniidhfkfnkiiktn***fysiiit
*lnsnyhhyk******s**krsgyrw*nidysgrrrvftsn*feikeyditnecctiw*k
eykisciqclsct*elynww*p*wfhlllg*ekfkftfl*itiykltnssykgkfiqfkd
ckfnlgylw*wllflvgfr*ksnhnlfiwy*y*ccnff*yrwksslfnfqrfnh*ml*yl
l
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC339 (CFC339Q) /CSM/CF/CFC3-B/CFC339Q.Seq.d/                       1970   0.0
VSD222 (VSD222Q) /CSM/VS/VSD2-A/VSD222Q.Seq.d/                       1407   0.0
AFK621 (AFK621Q) /CSM/AF/AFK6-A/AFK621Q.Seq.d/                       1388   0.0
VFF547 (VFF547Q) /CSM/VF/VFF5-B/VFF547Q.Seq.d/                       1386   0.0
CFJ122 (CFJ122Q) /CSM/CF/CFJ1-A/CFJ122Q.Seq.d/                       1382   0.0
CFF283 (CFF283Q) /CSM/CF/CFF2-D/CFF283Q.Seq.d/                       1362   0.0
VFK433 (VFK433Q) /CSM/VF/VFK4-B/VFK433Q.Seq.d/                       1354   0.0
CFH720 (CFH720Q) /CSM/CF/CFH7-A/CFH720Q.Seq.d/                       1326   0.0
AFK575 (AFK575Q) /CSM/AF/AFK5-D/AFK575Q.Seq.d/                       1326   0.0
SFI104 (SFI104Q) /CSM/SF/SFI1-A/SFI104Q.Seq.d/                       1312   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.  1405   0.0    15
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   4e-10  21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   1e-08  24
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    38   2e-08  22
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   2e-08  23
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            44   2e-07  25
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    32   3e-06  18
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   2e-05  24
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   3e-05  22
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   4e-05  19
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q8MYE8) RecName: Full=Probable proteasomal ATPase-associated fa...   419   0.0
(Q5ZK69) RecName: Full=Proteasomal ATPase-associated factor 1; A...   113   4e-48
AK222501_1(AK222501|pid:none) Homo sapiens mRNA for hypothetical...   104   1e-44
BC006142_1(BC006142|pid:none) Homo sapiens proteasomal ATPase-as...   103   1e-44
AB171255_1(AB171255|pid:none) Macaca fascicularis brain cDNA clo...   101   4e-43
(Q148I1) RecName: Full=Proteasomal ATPase-associated factor 1; A...   100   9e-43
BC028628_1(BC028628|pid:none) Homo sapiens proteasomal ATPase-as...   100   2e-40
AF087895_1(AF087895|pid:none) Homo sapiens G-16 mRNA, complete c...   100   2e-40
BC070729_1(BC070729|pid:none) Xenopus laevis hypothetical protei...    93   1e-38
AK316394_1(AK316394|pid:none) Homo sapiens cDNA, FLJ79293 comple...   100   5e-33
protein update 2009. 5.12
PSORT 

 psg: 0.73  gvh: 0.24  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for CFC339 is nuc
5' end seq. ID CFC339F
5' end seq. 
>CFC339F.Seq
AAATTATTAATTTACAATAATAACAAAGATGACAAGCAATACAACTGAAATACCCTATCA
TTTTTTACCATATGTAAGAATTCAATATGATTGGCAATTGGCATATAAACAAGATTCAGA
TAATTGTTGGGTTGCATATCAAAAAGATTTAAAAAATACAATTCATGGATCAGTTCATTC
TACCAAAATTGATGAAAATAATTTTAAATTTGAATCTGATTATGGATTTAAATTAACACC
AAATAAAGAAAATAAAAATAATATTAGAGTTGAAAATGATAAATATAGTATTGAAATATA
TGCACCAGAGAAACAGTTAAAAGTTTCAGGTGGAAAGAAAAGAATAACATCAATGGGTGT
TAGTCATTTAGGAGAGTTGGGTGTATATGGTAGTACTGATGGTACATTGGAAGTATTTGA
AACTGGTGATGGTCAAATTAGAAGAAAATTAGATGGTCATGTTGGTGATGTTGATTTGGC
AATGTTTTTCCCAAGTGGTAGGGTTATACTAAGTGGTTCCTCTGATAGTAGATTAAAGAT
TTGGGATGCTATAGAAGGCACATGCGCCTCTACATTGGTCGGA----------
Length of 5' end seq. 583
3' end seq. ID CFC339Z
3' end seq. 
>CFC339Z.Seq
----------GGACACATCGGTGGTATAACATCGGCATCATTGGTTGATCGTGGTAGAAA
TTTAGTATCATGTTCACGTGATGGTACAAGTAAATTATGGGATATACCAACATCATCGAT
CATTTCAAATTTAACAAAATTATCAAGACCAATTAATGATAGTTTTATAGCATCATCATT
ACTTGACTCAATTCCAACTACCACCACTACAAATAGTAATGATAATAATAAAGTTGATGA
AAGAGAAGTGGGTACAGATGGTAAAACATTGATTATAGCGGCAGAAGAAGGGTTTTTACA
AGCAATTGATTTGAGATCAAAGAATATGATATCACAAATGAATGTTGTACAATCTGGTGA
AAAGAGTACAAGATCAGTTGCATTCAATGCTTGTCATGTACATAAGAATTATATAATTGG
TGGTGACCATAATGGTTCCATTTACTTTTGGGATAAGAGAAATTTAAATTCACCTTTTTG
TAGATTACAATTTACAAACTCACCAATTCATCATATAAAGGCAAATTCATCCAATTCAAA
GATTGCAAATTCAATTTGGGTTACCTCTGGTGATGGTTGTTGTTTCTTGTTGGATTTAGA
TAAAAATCAAATCATAACCTCTTTATCTGGTATTGATACTGATGTTGTAACTTCTTTTAA
TATCGTTGGAAATCAAGCTTATTTAACTTCCAGAGATTCAATCATTAGATGTTATAATAT
TTATTAAA
Length of 3' end seq. 718
Connected seq. ID CFC339P
Connected seq. 
>CFC339P.Seq
AAATTATTAATTTACAATAATAACAAAGATGACAAGCAATACAACTGAAATACCCTATCA
TTTTTTACCATATGTAAGAATTCAATATGATTGGCAATTGGCATATAAACAAGATTCAGA
TAATTGTTGGGTTGCATATCAAAAAGATTTAAAAAATACAATTCATGGATCAGTTCATTC
TACCAAAATTGATGAAAATAATTTTAAATTTGAATCTGATTATGGATTTAAATTAACACC
AAATAAAGAAAATAAAAATAATATTAGAGTTGAAAATGATAAATATAGTATTGAAATATA
TGCACCAGAGAAACAGTTAAAAGTTTCAGGTGGAAAGAAAAGAATAACATCAATGGGTGT
TAGTCATTTAGGAGAGTTGGGTGTATATGGTAGTACTGATGGTACATTGGAAGTATTTGA
AACTGGTGATGGTCAAATTAGAAGAAAATTAGATGGTCATGTTGGTGATGTTGATTTGGC
AATGTTTTTCCCAAGTGGTAGGGTTATACTAAGTGGTTCCTCTGATAGTAGATTAAAGAT
TTGGGATGCTATAGAAGGCACATGCGCCTCTACATTGGTCGGA----------GGACACA
TCGGTGGTATAACATCGGCATCATTGGTTGATCGTGGTAGAAATTTAGTATCATGTTCAC
GTGATGGTACAAGTAAATTATGGGATATACCAACATCATCGATCATTTCAAATTTAACAA
AATTATCAAGACCAATTAATGATAGTTTTATAGCATCATCATTACTTGACTCAATTCCAA
CTACCACCACTACAAATAGTAATGATAATAATAAAGTTGATGAAAGAGAAGTGGGTACAG
ATGGTAAAACATTGATTATAGCGGCAGAAGAAGGGTTTTTACAAGCAATTGATTTGAGAT
CAAAGAATATGATATCACAAATGAATGTTGTACAATCTGGTGAAAAGAGTACAAGATCAG
TTGCATTCAATGCTTGTCATGTACATAAGAATTATATAATTGGTGGTGACCATAATGGTT
CCATTTACTTTTGGGATAAGAGAAATTTAAATTCACCTTTTTGTAGATTACAATTTACAA
ACTCACCAATTCATCATATAAAGGCAAATTCATCCAATTCAAAGATTGCAAATTCAATTT
GGGTTACCTCTGGTGATGGTTGTTGTTTCTTGTTGGATTTAGATAAAAATCAAATCATAA
CCTCTTTATCTGGTATTGATACTGATGTTGTAACTTCTTTTAATATCGTTGGAAATCAAG
CTTATTTAACTTCCAGAGATTCAATCATTAGATGTTATAATATTTATTAAA
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -