NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC332
Library CF
(Link to library)
Clone ID CFC332
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID CFC332P
(Link to Original site)
Representative DNA sequence 
>CFC332 (CFC332Q) /CSM/CF/CFC3-B/CFC332Q.Seq.d/
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACAXXXXXXXXXXATAGTCTTTCA
CCTTCAACAACTTCAACCACTACCACTACCACTACCACTACTTCACCCCAAACTCCAACT
AATGCCACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACACTAGA
CCTCCAATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACA
AATCAATATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGAT
AAGGCAATTAGACTTTTAACTCAAGCTAAAGGCAATGTTNATGTTGC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVE---

---SLSPSTTSTTTTTTTTTSPQTPTNATSPVNNNNNNNNNNNNTRPPINSPPVAKTPQP
TPQPTTNQYASESNIQTLIGLGCSRDKAIRLLTQAKGNVXV
Translated Amino Acid sequence (All Frames) 
Frame A:
iflntlthk*ylsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhn
fseqssfnt*wksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttt
tsttkrssqfttryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrt---

---ivfhlqqlqplplplpllhpklqlmplll*iiiiiiitttttldlqlihhqlqrhrn
qhhnqlqinmllnpiskplldlvvqeirqldf*lklkamxml

Frame B:
ff*th*HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTI
LVNNQVLTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQ
RQPQRDPLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVE---

---*sftfnnfnhyhyhyhyftpnsn*chfsck*******qqqqh*tsn*fttsckdtat
ntttnyksicf*iqypnpywtwlfkr*gn*tfnss*rqcxcc

Frame C:
ffkhtnt*iifiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf
**tikf*hlmeky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnn
vnhkeilsihhkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*n---

---SLSPSTTSTTTTTTTTTSPQTPTNATSPVNNNNNNNNNNNNTRPPINSPPVAKTPQP
TPQPTTNQYASESNIQTLIGLGCSRDKAIRLLTQAKGNVXV
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFE249 (VFE249Q) /CSM/VF/VFE2-C/VFE249Q.Seq.d/                        577   e-163
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/                        577   e-163
SFL472 (SFL472Q) /CSM/SF/SFL4-C/SFL472Q.Seq.d/                        577   e-163
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/                        577   e-163
SFK703 (SFK703Q) /CSM/SF/SFK7-A/SFK703Q.Seq.d/                        577   e-163
SFJ734 (SFJ734Q) /CSM/SF/SFJ7-B/SFJ734Q.Seq.d/                        577   e-163
SFJ357 (SFJ357Q) /CSM/SF/SFJ3-C/SFJ357Q.Seq.d/                        577   e-163
SFG344 (SFG344Q) /CSM/SF/SFG3-B/SFG344Q.Seq.d/                        577   e-163
SFF829 (SFF829Q) /CSM/SF/SFF8-B/SFF829Q.Seq.d/                        577   e-163
SFF802 (SFF802Q) /CSM/SF/SFF8-A/SFF802Q.Seq.d/                        577   e-163
own update 2001.11.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    52   7e-12  15
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    48   5e-08  9
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    48   6e-08  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    52   6e-07  9
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    56   2e-06  8
AF024654|AF024654.1 Dictyostelium discoideum hybrid histidine kinase DHKB (dhkB) gene, complete cds.    52   9e-06  3
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   3e-05  20
AC149162|AC149162.2 Xenopus tropicalis clone ISB-362P17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   5e-05  2
AC119130|AC119130.3 Rattus norvegicus clone CH230-414I23, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    54   5e-05  8
AC127156|AC127156.4 Rattus norvegicus clone CH230-7B10, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    54   6e-05  8
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog;                          235   1e-60
AK067974_1(AK067974|pid:none) Oryza sativa Japonica Group cDNA c...    58   3e-07
BT058466_1(BT058466|pid:none) Salmo salar clone Contig1073 UV ex...    46   0.002
BC055645_1(BC055645|pid:none) Danio rerio neural precursor cell ...    43   0.011
BT073010_1(BT073010|pid:none) Oncorhynchus mykiss clone omyk-evn...    43   0.011
BC078600_1(BC078600|pid:none) Xenopus laevis hypothetical protei...    43   0.011
BT075193_1(BT075193|pid:none) Osmerus mordax clone omor-eva-507-...    43   0.011
BC076245_1(BC076245|pid:none) Danio rerio neural precursor cell ...    43   0.011
EF103394_1(EF103394|pid:none) Haliotis discus discus ubiquitin-l...    42   0.018
AB024034_5(AB024034|pid:none) Arabidopsis thaliana genomic DNA, ...    42   0.018
protein update 2009. 5.12
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for CFC332 is cyt
5' end seq. ID CFC332F
5' end seq. 
>CFC332F.Seq
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACA----------
Length of 5' end seq. 519
3' end seq. ID CFC332Z
3' end seq. 
>CFC332Z.Seq
----------ATAGTCTTTCACCTTCAACAACTTCAACCACTACCACTACCACTACCACT
ACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAAATAATAATAATAATAATAAT
AACAACAACAACAACACTAGACCTCCAATTAATTCACCACCAGTTGCAAAGACACCGCAA
CCAACACCACAACCAACTACAAATCAATATGCTTCTGAATCCAATATCCAAACCCTTATT
GGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAACTCAAGCTAAAGGCAATGTT
NATGTTGC
Length of 3' end seq. 298
Connected seq. ID CFC332P
Connected seq. 
>CFC332P.Seq
ATTTTTTTAAACACACTAACACATAAATAATATTTATCTATCTATCCACACACCCAAAGT
ATTCATATTAATGGCAGAAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAA
TTTACAACCAGATCAAACAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAAT
TTTAGTGAACAATCAAGTTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATT
ATCAGACTATTCAATTAAAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGC
ACCACAACAAAGATCACAACAACCCCAACAACCACAACAACCACAACAACCACAACAACA
ACGTCAACCACAAAGAGATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAA
CAATCCTGAAGACTTAACTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTT
AAGTAAAGATATGAAATTCCTTACTCACTTTGTAGAACA----------ATAGTCTTTCA
CCTTCAACAACTTCAACCACTACCACTACCACTACCACTACTTCACCCCAAACTCCAACT
AATGCCACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACACTAGA
CCTCCAATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACA
AATCAATATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGAT
AAGGCAATTAGACTTTTAACTCAAGCTAAAGGCAATGTTNATGTTGC
Length of connected seq. 817
Full length Seq ID -
Full length Seq. -
Length of full length seq. -