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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC325
Library CF
(Link to library)
Clone ID CFC325
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16240-1
Original site URL
Representative seq. ID CFC325P
(Link to Original site)
Representative DNA sequence 
>CFC325 (CFC325Q) /CSM/CF/CFC3-B/CFC325Q.Seq.d/
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGTGGTGGTGGACCATTTGCAC
CAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGAT
TCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAAXX
XXXXXXXXTGTTCACATGAAATGATTCCAAATTGTCAATGTAACTCTACAACTTGTTTCA
CTGAAGATTTATGTTATCCAAAGTATTGTTCTGGTGATCTTTGTTTAACAATTCCAATTG
ATTGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAG
TTTGTGAAGTTGATTCAAGCTCTGTTGATATTTCAACCACTGGTATAGTTACAACCACTG
GCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTCAACAATTG
GTTTTGTAACTACCACTGGTGTAACAGCTTCAACGATTGGCATTGTTACTACAACTGGTT
TCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAACCTCAACAA
CTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAATTTCAACAT
CAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTCCACTGGAA
CAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCATTATTACT
GTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAATTGGAACC
GAAAGATTAATATTATTNATTAAAATAAAAACAAAAATAAATAAAAAACCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
SIYSQINNMKLIILIFIIILINYVFGQSSDDDGRLRPIPQQLIIRNFKPDRNPDFGIRLS
DDLVTGIMQPTLGDDKRPKYCCGENPVVDDQGVLIVNDEQSFNKWFNSDDLCSNYFLSYQ
LDLDLWDNFNIIGGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEY--
-

---CSHEMIPNCQCNSTTCFTEDLCYPKYCSGDLCLTIPIDCANLEPDCPTSVCFDGQCS
VCEVDSSSVDISTTGIVTTTGISISTIGPVSTTDLSISTIGFVTTTGVTASTIGIVTTTG
FITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTISTSISTSGATGTTTTPTTGSTG
TIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNNWNRKINIIX*nknknk*kt
Translated Amino Acid sequence (All Frames) 
Frame A:
iqytpksii*n**y*ylllf**tmflvnlvmmmvd*dqylnn***eilnliviqilesd*
vmil*lvlcnqpwemikdqnivvakilslmikef*l*mmnnplingsivmifvqiif*vi
n*i*ifgiili**vvvdhlhqlmvldlvtliyslsmqvidsisiivlsfishifhsmni-
--

---CSHEMIPNCQCNSTTCFTEDLCYPKYCSGDLCLTIPIDCANLEPDCPTSVCFDGQCS
VCEVDSSSVDISTTGIVTTTGISISTIGPVSTTDLSISTIGFVTTTGVTASTIGIVTTTG
FITSTTSTTGLLTTASTTSTTGILTTASSTSTTGIPTISTSISTSGATGTTTTPTTGSTG
TIPPIDLAKCSHDSCPPHYYCYQLTNSYTCISKEFYNNWNRKINIIX*nknknk*kt

Frame B:
fnilpnq*yeinniniyyyfnklcfwsi****w*iktntstinnkkf*t*s*srfwnpik
**scnwyyatnlgr**ktkillwrkscr**srsfnck**til**mvq***slfklffkls
irsrslg*f*ynrwwwtictn*wcwiw*p*sip*vck*siqsvslf*assliystr*i*-
--

---vhmk*fqivnvtlqlvslkiyviqsivlvifv*qfqlivqi*nqivqhlyvlmvnvq
fvkliqallifqplv*lqplaflylqlvlyqqliyqfqqlvl*lplv*qlqrlalllqlv
s*lqqlqqlvy*pllqqpqqlvy*pllhqlqqreyqqfqhqfrhqeqqeqqqpqqqvple
qyhlltlqnvvmilahliitvin*qihtlvyqknfiiigterlilxikiktkinkkp

Frame C:
SIYSQINNMKLIILIFIIILINYVFGQSSDDDGRLRPIPQQLIIRNFKPDRNPDFGIRLS
DDLVTGIMQPTLGDDKRPKYCCGENPVVDDQGVLIVNDEQSFNKWFNSDDLCSNYFLSYQ
LDLDLWDNFNIIGGGGPFAPTDGVGFGDPNLFPEYASDRFNQYHCFELHLSYIPLDEY--
-

---ft*ndsklsm*lynlfh*rfmlskvlfw*slfnnsn*lckfrtrlsnicmf*wsmfs
l*s*fklc*yfnhwysynhwhfyiynwscinn*finfnnwfcnyhwcnsfndwhcyynwf
hnfnnfnnwfinhcfnnlnnwyinhcfinfnngntnnfninfdirsnrnnnnpnnrfhwn
ntty*pckm*s*flptsllllsinkfihlyikril**lepkd*yyxlk*kqk*ikn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC325 (CFC325Q) /CSM/CF/CFC3-B/CFC325Q.Seq.d/                       2226   0.0
CFC602 (CFC602Q) /CSM/CF/CFC6-A/CFC602Q.Seq.d/                       1326   0.0
SFE370 (SFE370Q) /CSM/SF/SFE3-C/SFE370Q.Seq.d/                       1320   0.0
SFG761 (SFG761Q) /CSM/SF/SFG7-C/SFG761Q.Seq.d/                       1312   0.0
CHE478 (CHE478Q) /CSM/CH/CHE4-D/CHE478Q.Seq.d/                       1312   0.0
CFJ653 (CFJ653Q) /CSM/CF/CFJ6-C/CFJ653Q.Seq.d/                       1312   0.0
CFJ591 (CFJ591Q) /CSM/CF/CFJ5-D/CFJ591Q.Seq.d/                       1312   0.0
CFH416 (CFH416Q) /CSM/CF/CFH4-A/CFH416Q.Seq.d/                       1312   0.0
AFO774 (AFO774Q) /CSM/AF/AFO7-D/AFO774Q.Seq.d/                       1304   0.0
SFE196 (SFE196Q) /CSM/SF/SFE1-D/SFE196Q.Seq.d/                       1298   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   5e-07  16
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-06  19
AC117072|AC117072.3 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    38   1e-05  14
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    32   3e-05  13
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   4e-05  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    36   1e-04  19
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   2e-04  14
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    38   2e-04  18
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    34   3e-04  16
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36   4e-04  15
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 67   1e-09
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 65   5e-09
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 63   2e-08
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 51   7e-05
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 49   4e-04
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 48   6e-04
CR361548_6(CR361548|pid:none) Zebrafish DNA sequence from clone ...    40   0.13
CR361548_3(CR361548|pid:none) Zebrafish DNA sequence from clone ...    40   0.13
U52462_1(U52462|pid:none) Streptococcus suis IgG-binding protein...    38   0.64
AM743169_3069(AM743169|pid:none) Stenotrophomonas maltophilia K2...    38   0.83
protein update 2009. 5.12
PSORT 

 psg: 1.01  gvh: 0.69  alm: 0.37  top: 0.33  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFC325 is nuc
5' end seq. ID CFC325F
5' end seq. 
>CFC325F.Seq
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGTGGTGGTGGACCATTTGCAC
CAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGAT
TCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAA--
--------
Length of 5' end seq. 538
3' end seq. ID CFC325Z
3' end seq. 
>CFC325Z.Seq
----------TGTTCACATGAAATGATTCCAAATTGTCAATGTAACTCTACAACTTGTTT
CACTGAAGATTTATGTTATCCAAAGTATTGTTCTGGTGATCTTTGTTTAACAATTCCAAT
TGATTGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAATGTTC
AGTTTGTGAAGTTGATTCAAGCTCTGTTGATATTTCAACCACTGGTATAGTTACAACCAC
TGGCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTCAACAAT
TGGTTTTGTAACTACCACTGGTGTAACAGCTTCAACGATTGGCATTGTTACTACAACTGG
TTTCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAACCTCAAC
AACTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAATTTCAAC
ATCAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTCCACTGG
AACAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCATTATTA
CTGTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAATTGGAA
CCGAAAGATTAATATTATTNATTAAAATAAAAACAAAAATAAATAAAAAACCA
Length of 3' end seq. 703
Connected seq. ID CFC325P
Connected seq. 
>CFC325P.Seq
ATTCAATATACTCCCAAATCAATAATATGAAATTAATAATATTAATATTTATTATTATTT
TAATAAACTATGTTTTTGGTCAATCTAGTGATGATGATGGTAGATTAAGACCAATACCTC
AACAATTAATAATAAGAAATTTTAAACCTGATCGTAATCCAGATTTTGGAATCCGATTAA
GTGATGATCTTGTAACTGGTATTATGCAACCAACCTTGGGAGATGATAAAAGACCAAAAT
ATTGTTGTGGCGAAAATCCTGTCGTTGATGATCAAGGAGTTTTAATTGTAAATGATGAAC
AATCCTTTAATAAATGGTTCAATAGTGATGATCTTTGTTCAAATTATTTTTTAAGTTATC
AATTAGATCTAGATCTTTGGGATAATTTTAATATAATAGGTGGTGGTGGACCATTTGCAC
CAACTGATGGTGTTGGATTTGGTGACCCTAATCTATTCCCTGAGTATGCAAGTGATCGAT
TCAATCAGTATCATTGTTTTGAGCTTCATCTCTCATATATTCCACTCGATGAATATAA--
--------TGTTCACATGAAATGATTCCAAATTGTCAATGTAACTCTACAACTTGTTTCA
CTGAAGATTTATGTTATCCAAAGTATTGTTCTGGTGATCTTTGTTTAACAATTCCAATTG
ATTGTGCAAATTTAGAACCAGATTGTCCAACATCTGTATGTTTTGATGGTCAATGTTCAG
TTTGTGAAGTTGATTCAAGCTCTGTTGATATTTCAACCACTGGTATAGTTACAACCACTG
GCATTTCTATATCTACAATTGGTCCTGTATCAACAACTGATTTATCAATTTCAACAATTG
GTTTTGTAACTACCACTGGTGTAACAGCTTCAACGATTGGCATTGTTACTACAACTGGTT
TCATAACTTCAACAACTTCAACAACTGGTTTATTAACCACTGCTTCAACAACCTCAACAA
CTGGTATATTAACCACTGCTTCATCAACTTCAACAACGGGAATACCAACAATTTCAACAT
CAATTTCGACATCAGGAGCAACAGGAACAACAACAACCCCAACAACAGGTTCCACTGGAA
CAATACCACCTATTGACCTTGCAAAATGTAGTCATGATTCTTGCCCACCTCATTATTACT
GTTATCAATTAACAAATTCATACACTTGTATATCAAAAGAATTTTATAATAATTGGAACC
GAAAGATTAATATTATTNATTAAAATAAAAACAAAAATAAATAAAAAACCA
Length of connected seq. 1241
Full length Seq ID -
Full length Seq. -
Length of full length seq. -