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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC314
Library CF
(Link to library)
Clone ID CFC314
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID CFC314P
(Link to Original site)
Representative DNA sequence 
>CFC314 (CFC314Q) /CSM/CF/CFC3-A/CFC314Q.Seq.d/
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGGATGAGATGTCCA
GAAXXXXXXXXXXCAGCTGCTTCAATAGTAGAAACGGGTCCACACTGTCTTGCCAATAAT
GTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATT
AGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACT
TGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGC
AATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCA
ACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCA
ACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGT
GCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCA
AGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCC
TCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCA
GCTGCATCATCAGCTGCAAGCTCAGGAAGCTCAGAAAGCTCATCAGCCACTTCATAAATA
AAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRD
FVPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP
E---

---AASIVETGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCA
ELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATT
AGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASS
SAPSSASSSAPSSSASSSAASSAASSGSSESSSATS*ik
Translated Amino Acid sequence (All Frames) 
Frame A:
ihsil*l*kkesnnyiyi*KYKKNKMRILYLASLLFLITLYLSPTFGWGGGRDCESHRSE
YTCKSDRSCAYLPFVSCCGKKEFFCVNRDHRNCCDDLSCAKNTRTGEIFEIWSSCKPHRD
FVPYHSPNTTTCESLGCEARGMECEWVESSPCYGTSCCPRIPRCVGHHGGGHKCDRMRCP
E---

---qllq**krvhtvlpimyshnfvkllnvqlislvk*leviqlvlkqdhryhhhiaqlv
qsyhqhvitle*fvfkyqaivpildshvahliqfvfihqllllqplqqlhqlsqlqplql
lqvqqlvelqlvvqllivvllpqpivalpphhhqavllqvplqvnhqvaplqvvlhplpq
valhplpqvvlhhhqlqvqlhhqlqaqeaqkahqplhk*

Frame B:
fiqfcnykkrnqiiiyiyknikkik*efyi*llfyf*lhyiyhqllvgvvaeivkvivqn
ihvnqievvhiyhlyhvvvrknfsvliviieivvmiyhvlktrelvkslrfgqvvnhiei
lyhiihqiqphvnh*vvkqevwnvnglnhhhvmellvaqefqdvlvimvavinvtg*dvq
---

---scfnsrngstlscq*cipttl*sysmsn*fll*nd*r*snly*skttgttttllnlc
raiism*srwndlysstkqlyqy*ipmlpissnlyssinyccfnhcnncincrnynlcny
crynnwwnynwwfnf***ccflsr**rcllitikqccfkcrfk*tik*rrfk*csilclk
*rsilclk*csiiisfkfsciiscklrklrklishfink

Frame C:
sfnfviikkgik*lyiyiki*kk*nenfifsfsfifnyiisitnfwlgwwqrl*kssfri
ym*ir*klcifticimlw*eriflc*s*s*kll**fimc*khenw*nl*dlvkl*tt*rf
ctisftkynhm*iirl*skrygm*mg*iitmlwnfllpknskmcwsswwrs*m*qdemsr
---

---AASIVETGPHCLANNVFPQLCKVTQCPTDFSCKMIRGNPTCIKARPPVPPPHCSTCA
ELSSACNHVGMICIQVPSNCTNTRFPCCPSHPICIHPSTTAASTIATTASTVATTTSATT
AGTTTGGTTTGGSTSDSSAASSADSSAASSSPSSSAASSAASSEPSSSAASSSAPSSASS
SAPSSASSSAPSSSASSSAASSAASSGSSESSSATS*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC314 (CFC314Q) /CSM/CF/CFC3-A/CFC314Q.Seq.d/                       2185   0.0
SSG603 (SSG603Q) /CSM/SS/SSG6-A/SSG603Q.Seq.d/                       1257   0.0
SLE334 (SLE334Q) /CSM/SL/SLE3-B/SLE334Q.Seq.d/                       1257   0.0
SLE302 (SLE302Q) /CSM/SL/SLE3-A/SLE302Q.Seq.d/                       1257   0.0
SLE241 (SLE241Q) /CSM/SL/SLE2-B/SLE241Q.Seq.d/                       1257   0.0
SLB706 (SLB706Q) /CSM/SL/SLB7-A/SLB706Q.Seq.d/                       1257   0.0
SLB313 (SLB313Q) /CSM/SL/SLB3-A/SLB313Q.Seq.d/                       1257   0.0
SLB244 (SLB244Q) /CSM/SL/SLB2-B/SLB244Q.Seq.d/                       1257   0.0
SLB211 (SLB211Q) /CSM/SL/SLB2-A/SLB211Q.Seq.d/                       1257   0.0
SLB171 (SLB171Q) /CSM/SL/SLB1-C/SLB171Q.Seq.d/                       1257   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

D13973|D13973.1 Dictyostelium discoideum DNA for Dp87 protein, complete cds.  1227   0.0    7
BJ170760|BJ170760.1 Physcomitrella patens subsp. patens cDNA clone:pph26m16, 3' end, single read.   190   3e-44  1
AF279135|AF279135.1 Dictyostelium discoideum spore coat structural protein SP65 (cotE) gene, complete cds.    64   5e-06  1
AC079746|AC079746.2 Homo sapiens chromosome 7 clone CTD-2353O2, WORKING DRAFT SEQUENCE, 19 unordered pieces.    48   0.31   1
AZ208391|AZ208391.1 SP_0150_A1_B06_T7A Strongylocentrotus purpuratus, purple sea urchin , sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=150 Col=11 Row=C, DNA sequence.    48   0.31   1
AC073320|AC073320.8 Homo sapiens BAC clone RP11-306G20 from 7, complete sequence.    48   0.31   1
AC145891|AC145891.3 Pan troglodytes chromosome 7 clone RP43-20A24, WORKING DRAFT SEQUENCE, 3 unordered pieces.    48   0.31   1
AC084865|AC084865.3 Homo sapiens chromosome 7 clone RP11-437L1, complete sequence.    48   0.31   1
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  36   0.47   8
C26876|C26876.1 Oryza sativa (japonica cultivar-group) cDNA, partial sequence (C50317_1A).    36   0.72   2
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;       369   e-101
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...   364   4e-99
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;...   153   1e-35
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...   100   1e-19
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom...    69   2e-10
B25439(B25439)Beejin protein - slime mold (Dictyostelium discoid...    62   4e-08
AC117076_50(AC117076|pid:none) Dictyostelium discoideum chromoso...    60   1e-07
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    58   6e-07
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    58   6e-07
AC117076_49(AC117076|pid:none) Dictyostelium discoideum chromoso...    57   2e-06
protein update 2009. 5.12
PSORT 

 psg: 0.96  gvh: 0.77  alm: 0.45  top: 0.10  tms: 0.00  mit: 0.32  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: endoplasmic reticulum
	  8.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for CFC314 is exc
5' end seq. ID CFC314F
5' end seq. 
>CFC314F.Seq
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGGATGAGATGTCCA
GAA----------
Length of 5' end seq. 543
3' end seq. ID CFC314Z
3' end seq. 
>CFC314Z.Seq
----------CAGCTGCTTCAATAGTAGAAACGGGTCCACACTGTCTTGCCAATAATGTA
TTCCCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATTAGA
GGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACTTGT
GCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGCAAT
TGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCAACT
ACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCAACT
ACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGTGCT
GCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCAAGT
GCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCCTCA
AGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCAGCT
GCATCATCAGCTGCAAGCTCAGGAAGCTCAGAAAGCTCATCAGCCACTTCATAAATAAAA
Length of 3' end seq. 650
Connected seq. ID CFC314P
Connected seq. 
>CFC314P.Seq
ATTCATTCAATTTTGTAATTATAAAAAAAGGAATCAAATAATTATATATATATATAAAAA
TATAAAAAAAATAAAATGAGAATTTTATATTTAGCTTCTCTTTTATTTTTAATTACATTA
TATCTATCACCAACTTTTGGTTGGGGTGGTGGCAGAGATTGTGAAAGTCATCGTTCAGAA
TATACATGTAAATCAGATAGAAGTTGTGCATATTTACCATTTGTATCATGTTGTGGTAAG
AAAGAATTTTTCTGTGTTAATCGTGATCATAGAAATTGTTGTGATGATTTATCATGTGCT
AAAAACACGAGAACTGGTGAAATCTTTGAGATTTGGTCAAGTTGTAAACCACATAGAGAT
TTTGTACCATATCATTCACCAAATACAACCACATGTGAATCATTAGGTTGTGAAGCAAGA
GGTATGGAATGTGAATGGGTTGAATCATCACCATGTTATGGAACTTCTTGTTGCCCAAGA
ATTCCAAGATGTGTTGGTCATCATGGTGGCGGTCATAAATGTGACAGGATGAGATGTCCA
GAA----------CAGCTGCTTCAATAGTAGAAACGGGTCCACACTGTCTTGCCAATAAT
GTATTCCCACAACTTTGTAAAGTTACTCAATGTCCAACTGATTTCTCTTGTAAAATGATT
AGAGGTAATCCAACTTGTATTAAAGCAAGACCACCGGTACCACCACCACATTGCTCAACT
TGTGCAGAGCTATCATCAGCATGTAATCACGTTGGAATGATTTGTATTCAAGTACCAAGC
AATTGTACCAATACTAGATTCCCATGTTGCCCATCTCATCCAATTTGTATTCATCCATCA
ACTACTGCTGCTTCAACCATTGCAACAACTGCATCAACTGTCGCAACTACAACCTCTGCA
ACTACTGCAGGTACAACAACTGGTGGAACTACAACTGGTGGTTCAACTTCTGATAGTAGT
GCTGCTTCCTCAGCCGATAGTAGCGCTGCCTCCTCATCACCATCAAGCAGTGCTGCTTCA
AGTGCCGCTTCAAGTGAACCATCAAGTAGCGCCGCTTCAAGTAGTGCTCCATCCTCTGCC
TCAAGTAGCGCTCCATCCTCTGCCTCAAGTAGTGCTCCATCATCATCAGCTTCAAGTTCA
GCTGCATCATCAGCTGCAAGCTCAGGAAGCTCAGAAAGCTCATCAGCCACTTCATAAATA
AAA
Length of connected seq. 1193
Full length Seq ID -
Full length Seq. -
Length of full length seq. -