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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC309
Library CF
(Link to library)
Clone ID CFC309
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16430-1
Original site URL
Representative seq. ID CFC309P
(Link to Original site)
Representative DNA sequence 
>CFC309 (CFC309Q) /CSM/CF/CFC3-A/CFC309Q.Seq.d/
ATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAA
AAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTAT
GTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTC
AAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTT
GGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTAC
ACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTAT
TGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAG
TATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTAT
TGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTGXXXX
XXXXXXCTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTA
AAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAA
ACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAA
CAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCC
AACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATC
ATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACT
TTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAA
AGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGT
TTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGT
TTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGT
GATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAAGGAAAAAGTCGACTAGA
TTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTAATATTAAATAAAATAA
ATTTAAAAAAAATCTTCAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
frsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELIS
NASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTI
ARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAG--
-

---LEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELL
KQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKK
TLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKL
GLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSERKKSTRFNY*pfcyqfleyc*y*ik
*i*kkss
Translated Amino Acid sequence (All Frames) 
Frame A:
i*vlysns*lilfvffcrt*kng*its*tfhips*n*sayvpyy*yflfk*rsifkridf
kci*clr*nslpiin*cisfgikn*trn*nysr*dcqnsyth**wywydqnrygkefryy
csfry*klygtitkwcr*yqydwsiwcwfllcllscrycycsl*kq***tirlgikcw--
-

---LEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELL
KQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKK
TLELNPDHPIVRDLAKKAAEKSKTFKDFVYLLYETALLTSGFSLDEPSSFASRIHRMIKL
GLSIQDDSSATTEESTNTTTSDDIPPLEENDEPSERKKSTRFNY*pfcyqfleyc*y*ik
*i*kkss

Frame B:
frsyilihn*FYLFFFVEHKKMAESQVERFTFQAEINQLMSLIINTFYSNKEVFLRELIS
NASDALDKIRYQSLTDASVLESKTELEIKIIPDKTAKTLTLIDSGIGMTKTDMVKNLGTI
ARSGTKNFMEQLQSGAADISMIGQFGVGFYSAYLVADTVIVHSKNNDDEQYVWESSAG--
-

---lksftcvtqlmnmlfnn*knmtvrn*yqlpkkv*n*mkpkmkrkklnkiklpmknys
nklkmywviklkr*fsqlvlpthhvf*lplnmvgqqtwnvs*klklsvtlqchhtchqrk
l*n*iqitqslei*pkkppkkvklsktlftyymklls*lqvsh*mnhhhllhvfiv*ln*
v*afkmihqqqlknqqtqqpvmifhh*kktmnhlkgksrldlitspfainfwnivnik*n
kfkknlq

Frame C:
lgpif*fiinficffl*nikkwlnhklnvshsklklislcplllilfiqikkyf*en*fq
mhlmp*ikfvtnh*lmhqfwnqklnsklklfqirlpkllhslivvlv*pkpiw*ri*vll
lvqvlktlwnnykvvplisv*lvnlvlvstllt*lpilllftlktmmmnntfgnqvlv--
-

---*shlhv*pn**iccstikri*r*eisinyqrrfeir*nrr*keks*tr*scq*ritq
ts*rcig**s*kgsslnsscqltmcfsyl*iwlvskhgtyhessssp*lfnviihviken
friksrspnr*rfsqksrrkk*nfqrlcllii*ncslnfrflir*tiiicftyssyd*ir
fkhsr*fisnn*rinkhnnq**ystirrkr*ti*kekvd*i*llalllsifgillilnki
nlkkifk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHQ442 (VHQ442Q) /CSM/VH/VHQ4-B/VHQ442Q.Seq.d/                        967   0.0
VHP202 (VHP202Q) /CSM/VH/VHP2-A/VHP202Q.Seq.d/                        967   0.0
VHP152 (VHP152Q) /CSM/VH/VHP1-C/VHP152Q.Seq.d/                        967   0.0
VHM703 (VHM703Q) /CSM/VH/VHM7-A/VHM703Q.Seq.d/                        967   0.0
VHL676 (VHL676Q) /CSM/VH/VHL6-D/VHL676Q.Seq.d/                        967   0.0
VHL421 (VHL421Q) /CSM/VH/VHL4-A/VHL421Q.Seq.d/                        967   0.0
VHK487 (VHK487Q) /CSM/VH/VHK4-D/VHK487Q.Seq.d/                        967   0.0
VHK340 (VHK340Q) /CSM/VH/VHK3-B/VHK340Q.Seq.d/                        967   0.0
VHK280 (VHK280Q) /CSM/VH/VHK2-D/VHK280Q.Seq.d/                        967   0.0
VHJ821 (VHJ821Q) /CSM/VH/VHJ8-A/VHJ821Q.Seq.d/                        967   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L43591|L43591.1 Dictyostelium discoideum (clone C 6.1.1) heat shock cognate protein (hsc90) mRNA, complete cds.   934   0.0    3
L34027|L34027.1 Plasmodium falciparum (clone Dd2) heat shock protein 86 gene, complete cds.    98   7e-54  9
L34028|L34028.1 Plasmodium falciparum (clone HB3) heat shock protein 86 gene, complete cds.    98   7e-54  8
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    80   1e-52  15
Z29667|Z29667.1 P.falciparum (7) mRNA for heat-shock protein.      98   9e-52  8
AF030694|AF030694.2 Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1 (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3), putative chloroquine resistance transporter (crt), CG9 (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7) genes, complete cds.    98   4e-48  11
AY122634|AY122634.1 Naegleria gruberi strain ATCC 30224 heat shock protein 90 (HSP-90) gene, partial cds.    86   1e-46  7
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           98   1e-44  26
AF249998|AF249998.1 Habrotrocha constricta 82 kDa heat shock protein 2 (hsp82-2) gene, partial cds.    76   2e-43  4
AY423866|AY423866.1 Cryptosporidium parvum heat shock protein 90 gene, partial cds.    74   1e-42  8
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54651) RecName: Full=Heat shock cognate 90 kDa protein;             303   8e-81
L43591_1(L43591|pid:none) Dictyostelium discoideum (clone C 6.1....   303   8e-81
AB300196_1(AB300196|pid:none) Physarum polycephalum hsp90 mRNA f...   251   3e-65
EF687776_1(EF687776|pid:none) Crassostrea gigas heat shock prote...   244   5e-63
EF532406_1(EF532406|pid:none) Argopecten irradians heat shock pr...   239   1e-61
AF006542_1(AF006542|pid:none) Drosophila pseudoobscura bogotana ...   238   3e-61
AF006561_1(AF006561|pid:none) Drosophila miranda strain miranda2...   238   3e-61
AF006543_1(AF006543|pid:none) Drosophila pseudoobscura bogotana ...   238   3e-61
(O16087) RecName: Full=Heat shock protein 83; AltName: Full=HSP ...   238   3e-61
C24827(C24827) heat shock 82K protein - fruit fly (Drosophila ps...   238   3e-61
protein update 2009. 5.12
PSORT 

 psg: 0.50  gvh: 0.46  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFC309 is nuc
5' end seq. ID CFC309F
5' end seq. 
>CFC309F.Seq
ATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAA
AAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTAT
GTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTC
AAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTT
GGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTAC
ACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTAT
TGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAG
TATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTAT
TGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTG----
------
Length of 5' end seq. 536
3' end seq. ID CFC309Z
3' end seq. 
>CFC309Z.Seq
----------CTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAACA
ATTAAAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGA
TGAAACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTACT
CAAACAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCT
TGCCAACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACG
TATCATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAA
AACTTTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGA
AAAAAGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTC
AGGTTTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATT
AGGTTTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAAC
CAGTGATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAAGGAAAAAGTCGAC
TAGATTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTAATATTAAATAAA
ATAAATTTAAAAAAAATCTTCAAA
Length of 3' end seq. 734
Connected seq. ID CFC309P
Connected seq. 
>CFC309P.Seq
ATTTAGGTCCTATATTCTAATTCATAATTAATTTTATTTGTTTTTTTTTGTAGAACATAA
AAAAATGGCTGAATCACAAGTTGAACGTTTCACATTCCAAGCTGAAATTAATCAGCTTAT
GTCCCTTATTATTAATACTTTTTATTCAAATAAAGAAGTATTTTTAAGAGAATTGATTTC
AAATGCATCTGATGCCTTAGATAAAATTCGTTACCAATCATTAACTGATGCATCAGTTTT
GGAATCAAAAACTGAACTCGAAATTAAAATTATTCCAGATAAGACTGCCAAAACTCTTAC
ACTCATTGATAGTGGTATTGGTATGACCAAAACCGATATGGTAAAGAATTTAGGTACTAT
TGCTCGTTCAGGTACTAAAAACTTTATGGAACAATTACAAAGTGGTGCCGCTGATATCAG
TATGATTGGTCAATTTGGTGTTGGTTTCTACTCTGCTTACTTAGTTGCCGATACTGTTAT
TGTTCACTCTAAAAACAATGATGATGAACAATACGTTTGGGAATCAAGTGCTGGTG----
------CTTGAAGTCATTTACATGTGTGACCCAATTGATGAATATGCTGTTCAACAATTA
AAAGAATATGACGGTAAGAAATTAGTATCAATTACCAAAGAAGGTTTGAAATTAGATGAA
ACCGAAGATGAAAAGAAAAAAGCTGAACAAGATAAAGCTGCCAATGAAGAATTACTCAAA
CAAGTTAAAGATGTATTGGGTGATAAAGTTGAAAAGGTAGTTCTCTCAACTCGTCTTGCC
AACTCACCATGTGTTTTAGTTACCTCTGAATATGGTTGGTCAGCAAACATGGAACGTATC
ATGAAAGCTCAAGCTCTCCGTGACTCTTCAATGTCATCATACATGTCATCAAAGAAAACT
TTAGAATTAAATCCAGATCACCCAATCGTTAGAGATTTAGCCAAAAAAGCCGCCGAAAAA
AGTAAAACTTTCAAAGACTTTGTTTACTTATTATATGAAACTGCTCTCTTAACTTCAGGT
TTCTCATTAGATGAACCATCATCATTTGCTTCACGTATTCATCGTATGATTAAATTAGGT
TTAAGCATTCAAGATGATTCATCAGCAACAACTGAAGAATCAACAAACACAACAACCAGT
GATGATATTCCACCATTAGAAGAAAACGATGAACCATCTGAAAGGAAAAAGTCGACTAGA
TTTAATTACTAGCCCTTTTGCTATCAATTTTTGGAATATTGTTAATATTAAATAAAATAA
ATTTAAAAAAAATCTTCAAA
Length of connected seq. 1270
Full length Seq ID -
Full length Seq. -
Length of full length seq. -