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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC308
Library CF
(Link to library)
Clone ID CFC308
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14181-1
Original site URL
Representative seq. ID CFC308P
(Link to Original site)
Representative DNA sequence 
>CFC308 (CFC308Q) /CSM/CF/CFC3-A/CFC308Q.Seq.d/
TACTTTTCCATAACAATATTAATATTAAAACAATGAACCAAGTTATACCAAATGATGTTT
CATCAGTTTCATTAAAATTACAATCCGTTGATGATGGAAATGAGTATACTTCATCAATAA
GATCTTNATCAAACTCACTATATCCATATTTTAATAATAGTAATGAAAATTTATCAACAT
TATATTATAGTCATGGACAACAACAACAACAACAACAACAACAACAACAACAGCAACAAC
AACAAAATAATCAAAATCATTTATATACACAATTACAACAATTACAACAAATACAACAAT
TTCAACAACAGGTACAATCAAATAATGAACCATTAATATTAAATATAGGTGGTTTCAAAT
TTTGTACTACAAAAGGAACCTTAACAAATCAAAAAAATAATTACTTTGATATATTATTCT
CTGGTAATTATAATGTAAATGTAATCAAAACTCCAAATAAACCTGATACTTATTTTATTG
ATAGAGATGGTXXXXXXXXXXATTTTATTGATAGAGATGGTACACATTTTAGAATTATTT
TAAATTTTTTAAGAGGTGATTGTTCAAATATTCCAGAGTGTGAACAAATTAGAAATGAAT
TATATGTTGAAGCAGATTTTTATTGTTTATCAGGTTTAAAAGAATTGTTATATCCATATC
ATTTTTATCAATCAAAAATTTTATCTGTTGAATTATCAAAAGATTTAATTAGATTATTAA
AATCAAAATTACAAATTAAAAAAACAAGATTATTATATAGAGGATCAGATAATGATTTTT
CATCAAAGAGATTTCATGAATTATGTGATTTTAAAGGATCCACAATTACAATTATTAGAT
CAAAGGATTGTATATTTGGAGGATATGCAAGTCGTAATTGGACATTGTCTACCCAATATA
CTCAAGATGATAAATCATTTTTATTTGATTTGGCAAATATACCACCATCAATTATAAAAA
AAGAAGAAGGTTCATCAAGTCAATCAATTTATTCAAACATTAATTATGGTCCAACTTTTG
GTATATTGGGTAAAAATTTAACAATTTCAAATAATTGTAATATAAATAAAGAGAATTTCT
TTGAATCTTATTATGATAGTAAAGGAAAAGGTAAAAGATATTTTCAAGTTGATGAATATG
AAGTTTTTAAAATTGAATGTTAACAATAAATTTNAAAAAAATAATAAATAAAAAATATAT
ATATATTTAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LFHNNINIKTMNQVIPNDVSSVSLKLQSVDDGNEYTSSIRSXSNSLYPYFNNSNENLSTL
YYSHGQQQQQQQQQQQQQQQQNNQNHLYTQLQQLQQIQQFQQQVQSNNEPLILNIGGFKF
CTTKGTLTNQKNNYFDILFSGNYNVNVIKTPNKPDTYFIDRDG---

---FIDRDGTHFRIILNFLRGDCSNIPECEQIRNELYVEADFYCLSGLKELLYPYHFYQS
KILSVELSKDLIRLLKSKLQIKKTRLLYRGSDNDFSSKRFHELCDFKGSTITIIRSKDCI
FGGYASRNWTLSTQYTQDDKSFLFDLANIPPSIIKKEEGSSSQSIYSNINYGPTFGILGK
NLTISNNCNINKENFFESYYDSKGKGKRYFQVDEYEVFKIEC*q*ixkk**ikniyifkk
Translated Amino Acid sequence (All Frames) 
Frame A:
yfsitililkq*tklyqmmfhqfh*nynplmmemsilhq*dlxqthyihiliivmkiyqh
yiivmdnnnnnnnnnnnsnnnkiikiiyihnynnynkynnfnnrynqimnh*y*i*vvsn
fvlqkep*qikkiitliyyslviim*m*sklqinlililliem---

---illiemvhilelf*if*evivqifqsvnklemnymlkqifivyqv*kncyihiifin
qkfyllnyqki*ldy*nqnyklkkqdyyiedqimifhqrdfmnyvilkdpqlqlldqriv
yledmqvvighclpnilkminhfyliwqiyhhql*kkkkvhqvnqfiqtlimvqllvywv
ki*qfqiivi*ikrislnlimivkekvkdifklmnmkflklnvnnkfxknnk*kiyiylk
k

Frame B:
tfp*qy*y*nnepsytk*cfisfikitir**wk*vyfinkixikltisif*****kfini
il*swttttttttttttatttk*sksfiytittittnttisttgtik**tinikyrwfqi
lyykrnlnkskk*ll*yiilw*l*ckcnqnsk*t*ylfy**rw---

---fy**rwytf*nyfkffkr*lfkysrv*tn*k*iic*srfllfirfkrivisisflsi
knfic*iikrfn*iikikitn*knkiii*rir**ffikeis*im*f*rihnyny*ikgly
iwricks*ldivypiysr**iifi*fgkyttinykkrrrfiksinlfkh*lwsnfwyig*
kfnnfk*l*yk*refl*ill***rkr*kifss**i*sf*n*mltinxkkiinkkyiyi*k

Frame C:
LFHNNINIKTMNQVIPNDVSSVSLKLQSVDDGNEYTSSIRSXSNSLYPYFNNSNENLSTL
YYSHGQQQQQQQQQQQQQQQQNNQNHLYTQLQQLQQIQQFQQQVQSNNEPLILNIGGFKF
CTTKGTLTNQKNNYFDILFSGNYNVNVIKTPNKPDTYFIDRDG---

---FIDRDGTHFRIILNFLRGDCSNIPECEQIRNELYVEADFYCLSGLKELLYPYHFYQS
KILSVELSKDLIRLLKSKLQIKKTRLLYRGSDNDFSSKRFHELCDFKGSTITIIRSKDCI
FGGYASRNWTLSTQYTQDDKSFLFDLANIPPSIIKKEEGSSSQSIYSNINYGPTFGILGK
NLTISNNCNINKENFFESYYDSKGKGKRYFQVDEYEVFKIEC*q*ixkk**ikniyifkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFI477 (SFI477Q) /CSM/SF/SFI4-D/SFI477Q.Seq.d/                        789   0.0
CFC308 (CFC308Q) /CSM/CF/CFC3-A/CFC308Q.Seq.d/                        789   0.0
CFI843 (CFI843Q) /CSM/CF/CFI8-B/CFI843Q.Seq.d/                        757   0.0
CFC559 (CFC559Q) /CSM/CF/CFC5-C/CFC559Q.Seq.d/                        755   0.0
CFF701 (CFF701Q) /CSM/CF/CFF7-A/CFF701Q.Seq.d/                        753   0.0
SSG557 (SSG557Q) /CSM/SS/SSG5-C/SSG557Q.Seq.d/                        731   0.0
SSG621 (SSG621Q) /CSM/SS/SSG6-A/SSG621Q.Seq.d/                        622   e-177
SFI877 (SFI877Q) /CSM/SF/SFI8-D/SFI877Q.Seq.d/                        381   e-104
CHE190 (CHE190Q) /CSM/CH/CHE1-D/CHE190Q.Seq.d/                        375   e-102
SFK467 (SFK467Q) /CSM/SF/SFK4-C/SFK467Q.Seq.d/                        367   e-100
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   2e-13  25
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   3e-13  28
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   8e-12  26
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   8e-12  30
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   1e-11  27
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    38   8e-11  22
AE014846|AE014846.1 Plasmodium falciparum 3D7 chromosome 12, section 3 of 9 of the complete sequence.    34   3e-10  17
AC005506|AC005506.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    34   1e-08  16
CR382398|CR382398.1 Plasmodium falciparum chromosome 6, complete sequence; segment 1/5.    34   4e-08  20
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   1e-07  17
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q3URF8) RecName: Full=BTB/POZ domain-containing protein KCTD21;...    64   1e-08
BC139363_1(BC139363|pid:none) Mus musculus potassium channel tet...    64   1e-08
EU643477_9(EU643477|pid:none) Adineta vaga clone Av_TEL_K_A retr...    62   3e-08
AY232114_1(AY232114|pid:none) Drosophila yakuba clone yak-ad_CG1...    62   5e-08
U80842_16(U80842|pid:none) Caenorhabditis elegans cosmid ZC239, ...    61   9e-08
T25978(T25978)hypothetical protein ZC239.15 - Caenorhabditis ele...    61   9e-08
AM910994_107(AM910994|pid:none) Plasmodium knowlesi strain H chr...    61   9e-08
T32065(T32065)hypothetical protein F22E5.8 - Caenorhabditis eleg...    60   2e-07
T25976(T25976)hypothetical protein ZC239.14 - Caenorhabditis ele...    59   3e-07
U80842_14(U80842|pid:none) Caenorhabditis elegans cosmid ZC239, ...    59   3e-07
protein update 2009. 5.12
PSORT 

 psg: 0.72  gvh: 0.28  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall

>> prediction for CFC308 is nuc
5' end seq. ID CFC308F
5' end seq. 
>CFC308F.Seq
TACTTTTCCATAACAATATTAATATTAAAACAATGAACCAAGTTATACCAAATGATGTTT
CATCAGTTTCATTAAAATTACAATCCGTTGATGATGGAAATGAGTATACTTCATCAATAA
GATCTTNATCAAACTCACTATATCCATATTTTAATAATAGTAATGAAAATTTATCAACAT
TATATTATAGTCATGGACAACAACAACAACAACAACAACAACAACAACAACAGCAACAAC
AACAAAATAATCAAAATCATTTATATACACAATTACAACAATTACAACAAATACAACAAT
TTCAACAACAGGTACAATCAAATAATGAACCATTAATATTAAATATAGGTGGTTTCAAAT
TTTGTACTACAAAAGGAACCTTAACAAATCAAAAAAATAATTACTTTGATATATTATTCT
CTGGTAATTATAATGTAAATGTAATCAAAACTCCAAATAAACCTGATACTTATTTTATTG
ATAGAGATGGT----------
Length of 5' end seq. 491
3' end seq. ID CFC308Z
3' end seq. 
>CFC308Z.Seq
----------ATTTTATTGATAGAGATGGTACACATTTTAGAATTATTTTAAATTTTTTA
AGAGGTGATTGTTCAAATATTCCAGAGTGTGAACAAATTAGAAATGAATTATATGTTGAA
GCAGATTTTTATTGTTTATCAGGTTTAAAAGAATTGTTATATCCATATCATTTTTATCAA
TCAAAAATTTTATCTGTTGAATTATCAAAAGATTTAATTAGATTATTAAAATCAAAATTA
CAAATTAAAAAAACAAGATTATTATATAGAGGATCAGATAATGATTTTTCATCAAAGAGA
TTTCATGAATTATGTGATTTTAAAGGATCCACAATTACAATTATTAGATCAAAGGATTGT
ATATTTGGAGGATATGCAAGTCGTAATTGGACATTGTCTACCCAATATACTCAAGATGAT
AAATCATTTTTATTTGATTTGGCAAATATACCACCATCAATTATAAAAAAAGAAGAAGGT
TCATCAAGTCAATCAATTTATTCAAACATTAATTATGGTCCAACTTTTGGTATATTGGGT
AAAAATTTAACAATTTCAAATAATTGTAATATAAATAAAGAGAATTTCTTTGAATCTTAT
TATGATAGTAAAGGAAAAGGTAAAAGATATTTTCAAGTTGATGAATATGAAGTTTTTAAA
ATTGAATGTTAACAATAAATTTNAAAAAAATAATAAATAAAAAATATATATATATTTAAA
AAAA
Length of 3' end seq. 714
Connected seq. ID CFC308P
Connected seq. 
>CFC308P.Seq
TACTTTTCCATAACAATATTAATATTAAAACAATGAACCAAGTTATACCAAATGATGTTT
CATCAGTTTCATTAAAATTACAATCCGTTGATGATGGAAATGAGTATACTTCATCAATAA
GATCTTNATCAAACTCACTATATCCATATTTTAATAATAGTAATGAAAATTTATCAACAT
TATATTATAGTCATGGACAACAACAACAACAACAACAACAACAACAACAACAGCAACAAC
AACAAAATAATCAAAATCATTTATATACACAATTACAACAATTACAACAAATACAACAAT
TTCAACAACAGGTACAATCAAATAATGAACCATTAATATTAAATATAGGTGGTTTCAAAT
TTTGTACTACAAAAGGAACCTTAACAAATCAAAAAAATAATTACTTTGATATATTATTCT
CTGGTAATTATAATGTAAATGTAATCAAAACTCCAAATAAACCTGATACTTATTTTATTG
ATAGAGATGGT----------ATTTTATTGATAGAGATGGTACACATTTTAGAATTATTT
TAAATTTTTTAAGAGGTGATTGTTCAAATATTCCAGAGTGTGAACAAATTAGAAATGAAT
TATATGTTGAAGCAGATTTTTATTGTTTATCAGGTTTAAAAGAATTGTTATATCCATATC
ATTTTTATCAATCAAAAATTTTATCTGTTGAATTATCAAAAGATTTAATTAGATTATTAA
AATCAAAATTACAAATTAAAAAAACAAGATTATTATATAGAGGATCAGATAATGATTTTT
CATCAAAGAGATTTCATGAATTATGTGATTTTAAAGGATCCACAATTACAATTATTAGAT
CAAAGGATTGTATATTTGGAGGATATGCAAGTCGTAATTGGACATTGTCTACCCAATATA
CTCAAGATGATAAATCATTTTTATTTGATTTGGCAAATATACCACCATCAATTATAAAAA
AAGAAGAAGGTTCATCAAGTCAATCAATTTATTCAAACATTAATTATGGTCCAACTTTTG
GTATATTGGGTAAAAATTTAACAATTTCAAATAATTGTAATATAAATAAAGAGAATTTCT
TTGAATCTTATTATGATAGTAAAGGAAAAGGTAAAAGATATTTTCAAGTTGATGAATATG
AAGTTTTTAAAATTGAATGTTAACAATAAATTTNAAAAAAATAATAAATAAAAAATATAT
ATATATTTAAAAAAA
Length of connected seq. 1205
Full length Seq ID -
Full length Seq. -
Length of full length seq. -