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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC290
Library CF
(Link to library)
Clone ID CFC290
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID CFC290E
(Link to Original site)
Representative DNA sequence 
>CFC290 (CFC290Q) /CSM/CF/CFC2-D/CFC290Q.Seq.d/
AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA
AAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG
TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT
CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGNGAT
GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC
ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGNGTT
GCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA
GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT
CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT
GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA
CGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGT
GGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTA
GCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATTA
GAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCGT
TGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGAA
ACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAAT
GTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGAA
TTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCAC
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kqlkrf*lyfnik*ink*kkk*KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG
RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV
APXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSG
DGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL
AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP
Translated Amino Acid sequence (All Frames) 
Frame A:
kqlkrf*lyfnik*ink*kkk*KMDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVG
RPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRV
APXEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSG
DGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKL
AYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAP


Frame B:
nnskdfnyililnk*tnkkknkkwmxkmfkl*llimvqvcvklvllvmmlhvlfshqllv
vqdtlvlwlvwvkrihmsxmklnqkevf*hlsiqlnmvlspigmiwkksgiilfimnfxl
lxrniqfx*lklh*iqkqierk*lksclklstlqqcmlpfklyyhsmplvvplvslwiqv
mvfpilyqftkvmhyhmlfyv*i*lvvillit**ks*lnvvthsqqllkeksleilkrn*
htlhwilklkcklqphhlh*rnhmnyqmvkllqlvmnvsvvqkhfsnhhswvwsllvfmk
qpiiqs*nvmlifvkiymvmlyyqvvqlcsqvlliv*ikn*lhlhhqq*klkllhh


Frame C:
ttqkiliif*y*inkqikkkikngwxrcssfsy**wfryv*swfcw**cstccfpincws
skthwcygwygskgficrx*ssikkryfnt*vsn*twychqlg*ygknlasyfl**tsxc
sxgtsssxn*ssiksksk*rendsnhv*nfqhssnvcchssciitlclwsyhwyrygfr*
wcfpyctnlrrlcittcyftfrfsws*sy*lhdenln*twllihnnc*krnr*ry*reis
ircigf*s*nancsliicireii*itrwssyynw**tfplsrstfptiilgygvcwys*n
nl*fnhem*c*ys*rfiw*cciirwynyvpryc*sye*rinctctinnen*nyct
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFI283 (VFI283Q) /CSM/VF/VFI2-D/VFI283Q.Seq.d/                       1951   0.0
CHD733 (CHD733Q) /CSM/CH/CHD7-B/CHD733Q.Seq.d/                       1951   0.0
CFC565 (CFC565Q) /CSM/CF/CFC5-C/CFC565Q.Seq.d/                       1951   0.0
CFC290 (CFC290Q) /CSM/CF/CFC2-D/CFC290Q.Seq.d/                       1951   0.0
AFI479 (AFI479Q) /CSM/AF/AFI4-D/AFI479Q.Seq.d/                       1951   0.0
AFG845 (AFG845Q) /CSM/AF/AFG8-B/AFG845Q.Seq.d/                       1951   0.0
AFG308 (AFG308Q) /CSM/AF/AFG3-A/AFG308Q.Seq.d/                       1951   0.0
AFG203 (AFG203Q) /CSM/AF/AFG2-A/AFG203Q.Seq.d/                       1951   0.0
AFD269 (AFD269Q) /CSM/AF/AFD2-C/AFD269Q.Seq.d/                       1951   0.0
AFD237 (AFD237Q) /CSM/AF/AFD2-B/AFD237Q.Seq.d/                       1951   0.0
own update 2002.11.16
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X03283|X03283.1 Dictyostelium discoideum gene for actin A3-S1.   1560   0.0    1
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.  1499   0.0    16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.  1419   0.0    15
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.  1404   0.0    20
X03282|X03282.1 dictyostelium discoideum gene for actin A12.     1380   0.0    1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.  1308   0.0    14
X03284|X03284.1 Dictyostelium discoideum gene for actin A3-S2.   1298   0.0    1
AC115680|AC115680.3 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.  1205   0.0    7
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        1205   0.0    1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1174   0.0    13
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   667   0.0
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   662   0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   660   0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        660   0.0
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   660   0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   659   0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          652   0.0
AY294152_1(AY294152|pid:none) Mayorella sp. JJP-2003 actin mRNA,...   650   0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   647   0.0
AY294153_1(AY294153|pid:none) Platyamoeba placida actin mRNA, pa...   646   0.0
protein update 2009. 6.30
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFC290 is cyt
5' end seq. ID CFC290F
5' end seq. 
>CFC290F.Seq
AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA
AAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG
TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT
CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGNGAT
GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC
ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGNGTT
GCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA
GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT
CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT
GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA
CGTTT----------
Length of 5' end seq. 605
3' end seq. ID CFC290Z
3' end seq. 
>CFC290Z.Seq
----------TGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCC
ATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCA
GGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATT
TTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAA
CGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAA
TTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCA
TTAGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTC
CGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCAT
GAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGT
AATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAA
GAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCAC
Length of 3' end seq. 642
Connected seq. ID CFC290P
Connected seq. 
>CFC290P.Seq
AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA
AAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG
TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT
CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGNGAT
GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC
ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGNGTT
GCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA
GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT
CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT
GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA
CGTTT----------TGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATG
TTGCCATTCAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGG
ATTCAGGTGATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATG
CTATTTTACGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAA
CTGAACGTGGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAG
AGAAATTAGCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCAT
CTGCATTAGAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAAC
GTTTCCGTTGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTA
TTCATGAAACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTAT
ATGGTAATGTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGA
ATAAAGAATTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCAC
Length of connected seq. 1247
Full length Seq ID CFC290E
Full length Seq. 
>CFC290E.Seq
AAACAACTCAAAAGATTTTAATTATATTTTAATATTAAATAAATAAACAAATAAAAAAAA
AAATAAAAAATGGATGGNGAAGATGTTCAAGCTTTAGTTATTGATAATGGTTCAGGTATG
TGTAAAGCTGGTTTTGCTGGTGATGATGCTCCACGTGCTGTTTTCCCATCAATTGTTGGT
CGTCCAAGACACACTGGTGTTATGGTTGGTATGGGTCAAAAGGATTCATATGTCGGNGAT
GAAGCTCAATCAAAAAGAGGTATTTTAACACTTAAGTATCCAATTGAACATGGTATTGTC
ACCAATTGGGATGATATGGAAAAAATCTGGCATCATACTTTTTATAATGAACTTCGNGTT
GCTCCANAGGAACATCCAGTTCTNTTAACTGAAGCTCCATTAAATCCAAAAGCAAATAGA
GAGAAAATGACTCAAATCATGTTTGAAACTTTCAACACTCCAGCAATGTATGTTGCCATT
CAAGCTGTATTATCACTCTATGCCTCTGGTCGTACCACTGGTATCGTTATGGATTCAGGT
GATGGTGTTTCCCATACTGTACCAATTTACGAAGGTTATGCATTACCACATGCTATTTTA
CGTTTAGATTTAGCTGGTCGTGATCTTACTGATTACATGATGAAAATCTTAACTGAACGT
GGTTACTCATTCACAACAACTGCTGAAAGAGAAATCGTTAGAGATATTAAAGAGAAATTA
GCATACGTTGCATTGGATTTTGAAGCTGAAATGCAAACTGCAGCCTCATCATCTGCATTA
GAGAAATCATATGAATTACCAGATGGTCAAGTTATTACAATTGGTAATGAACGTTTCCGT
TGTCCAGAAGCACTTTTCCAACCATCATTCTTGGGTATGGAGTCTGCTGGTATTCATGAA
ACAACCTATAATTCAATCATGAAATGTGATGTTGATATTCGTAAAGATTTATATGGTAAT
GTTGTATTATCAGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAATAAAGAA
TTAACTGCACTTGCACCATCAACAATGAAAATTAAAATTATTGCACCAC
Length of full length seq. 1069