CFC289
Library CF
(Link to library)
Clone ID CFC289
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11234-1
Original site URL
Representative seq. ID CFC289E
(Link to Original site)
Representative DNA sequence
>CFC289 (CFC289Q) /CSM/CF/CFC2-D/CFC289Q.Seq.d/
ACAAAGGATGAGCGTAAAGAAATGTGGGATTTCTATGCACCAGTACCAAGAATGAGAATT
AATTTAGGTATACGTAGACGTTTGGCACCATTGATGGGTGGTGATCAAAGAAAGATCGAG
TTAGCCTATTCTCTATTGTTTACATTACCAGGCTCACCAATCATTTACTATGGCGATGAA
ATTTGTATGGGTGATAATATTTGGTTAGAAGATCGTCATGGTGTACGTACTCCAATGCAA
TGGTCTGATCAACCACCCAATGGTGGTTTCTCAACTTCAAATAAACTCTATGCACCAGTT
ATCGATGATCCCGAATATGGCTATCAAAAAGTGAATGTTGTTGAATCTGAAAAAGATCCA
TCTTCACTCTATCAAGTAATTCGTCAAATGATTCAAAGAAGAAGAAAACATCTCTCATTT
GGTCATGGTTCATTCCAATGGGTAAACTCTGATAATCCACATATTGCTTCCTATATGAGA
ATTTGTGGTATTGATAGAATGTTTATTGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTT
ACTTTACATACTCATGCTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATT
TGTGGTGGTGGTGGATCACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCA
AGTGGTATTGGTTCAAGAATTGGCGGTACAAATACTAGTGGTGGTGGTGGTGGTGGTAAT
AATGATGGAATTTCAAATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGCA
GGTGGTAATTTATCAGGTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCAT
TATCAACAATCAAATATAAATAGACAACAACATCTTCAACCTTTAACAACCAAAGAAGAA
TATGAAGCATCAAAAGATACTAAACAACCATTTGTTTCATTTTTAAATGTTGAAACTGCT
TCCTATGATGAACAATCACATTATTTAATAGATATTTTAACAGATTATCAAGTGATGGTA
GATCAAAAAGGTTATGTTACAATGGATTTAGAACCATACCAATTCTTTTGGTTCTCAATG
GGTGAAATTACAACTTTAATGGGTGATGGTTCAAAATCACGTGATCTTAGAAGAAAATCA
ATTCAAATTAATGATCCAATTAATTTACATCATAGAAATTCTCATTTTGCNATCCAATTG
ANAATAAATAAATAAAATCATTTC
sequence update 2001. 6. 9
Translated Amino Acid sequence
TKDERKEMWDFYAPVPRMRINLGIRRRLAPLMGGDQRKIELAYSLLFTLPGSPIIYYGDE
ICMGDNIWLEDRHGVRTPMQWSDQPPNGGFSTSNKLYAPVIDDPEYGYQKVNVVESEKDP
SSLYQVIRQMIQRRRKHLSFGHGSFQWVNSDNPHIASYMRICGIDRMFIVQNLSDQVQKV
TLHTHATPVLPSLSTHQSSICGGGGSLHRRTASNSGDGIASGIGSRIGGTNTSGGGGGGN
NDGISNITSNFGNTLTVDGAGGNLSGSKVTPIPTRKVHTHYQQSNINRQQHLQPLTTKEE
YEASKDTKQPFVSFLNVETASYDEQSHYLIDILTDYQVMVDQKGYVTMDLEPYQFFWFSM
GEITTLMGDGSKSRDLRRKSIQINDPINLHHRNSHFAIQLXINK*nhf


Translated Amino Acid sequence (All Frames)
Frame A:
TKDERKEMWDFYAPVPRMRINLGIRRRLAPLMGGDQRKIELAYSLLFTLPGSPIIYYGDE
ICMGDNIWLEDRHGVRTPMQWSDQPPNGGFSTSNKLYAPVIDDPEYGYQKVNVVESEKDP
SSLYQVIRQMIQRRRKHLSFGHGSFQWVNSDNPHIASYMRICGIDRMFIVQNLSDQVQKV
TLHTHATPVLPSLSTHQSSICGGGGSLHRRTASNSGDGIASGIGSRIGGTNTSGGGGGGN
NDGISNITSNFGNTLTVDGAGGNLSGSKVTPIPTRKVHTHYQQSNINRQQHLQPLTTKEE
YEASKDTKQPFVSFLNVETASYDEQSHYLIDILTDYQVMVDQKGYVTMDLEPYQFFWFSM
GEITTLMGDGSKSRDLRRKSIQINDPINLHHRNSHFAIQLXINK*nhf


Frame B:
qrmsvkkcgismhqyqe*eli*vyvdvwhh*wvvikerss*pilyclhyqahqsftmamk
fvwviifg*kivmvyvlqcnglinhpmvvsqlqinsmhqlsmipnmaikk*mllnlkkih
lhsik*fvk*fkeeenishlvmvhsng*tliihillpi*efvvliecllfkiflikfkkl
lyilmllqfyhhyqlinlqfvvvvdhfivellvivvmvlqvvlvqelavqilvvvvvvvi
mmefqilqvilvil*qlmvqvviyqvqklhqfqlekfiliinnqi*idnnifnl*qpkkn
mkhqkilnnhlfhf*mlkllpmmnnhii**if*qiik*w*ikkvmlqwi*nhtnsfgsqw
vklql*wvmvqnhvileenqfklmiqliyiieililxsn*x*inkii


Frame C:
kg*a*rnvgflctstknen*fryt*tfgtidgw*skkdrvslfsivyitrltnhllwr*n
lyg**ylvrrsswctysnamv*sttqwwflnfk*tlctsyr*sriwlsksecc*i*krsi
ftlssnssndskkkktsliwswfipmgkl**stycflyenlwy**nvycsksf*sssksy
ftyscyssftiiinssifnlwwwwitss*nc***w*wyckwywfknwryky*wwwwww**
*wnfkyyk*fw*yfns*wcrw*firfksytnsn*kssyslstikyk*tttsstfnnqrri
*sikry*tticfifkc*ncfl**titlfnryfnrlssdgrskrlcyngfrtipillvlng
*nynfng*wfkit*s*kkinsn**sn*fts*kfsfcxpixnk*iksf


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC289 (CFC289Q) /CSM/CF/CFC2-D/CFC289Q.Seq.d/ 1382 0.0
VHJ358 (VHJ358Q) /CSM/VH/VHJ3-C/VHJ358Q.Seq.d/ 979 0.0
SLA289 (SLA289Q) /CSM/SL/SLA2-D/SLA289Q.Seq.d/ 965 0.0
AFN120 (AFN120Q) /CSM/AF/AFN1-A/AFN120Q.Seq.d/ 950 0.0
AFL570 (AFL570Q) /CSM/AF/AFL5-C/AFL570Q.Seq.d/ 948 0.0
CHH251 (CHH251Q) /CSM/CH/CHH2-C/CHH251Q.Seq.d/ 936 0.0
SFK748 (SFK748Q) /CSM/SF/SFK7-B/SFK748Q.Seq.d/ 930 0.0
AFM221 (AFM221Q) /CSM/AF/AFM2-A/AFM221Q.Seq.d/ 928 0.0
SSL244 (SSL244Q) /CSM/SS/SSL2-B/SSL244Q.Seq.d/ 827 0.0
SHB186 (SHB186Q) /CSM/SH/SHB1-D/SHB186Q.Seq.d/ 781 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 40 1e-06 13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 34 1e-06 19
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 36 2e-05 22
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 4e-05 21
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 32 4e-05 18
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence. 36 6e-05 20
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 2e-04 18
AY178792|AY178792.1 Canis familiaris chromosome CFA9, *** SEQUENCING IN PROGRESS ***, 71 unordered pieces. 42 2e-04 2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 32 8e-04 17
CE285448|CE285448.1 tigr-gss-dog-17000333798523 Dog Library Canis familiaris genomic, genomic survey sequence. 42 0.001 2
dna update 2004. 3. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001114_797(CP001114|pid:none) Deinococcus deserti VCD115, comp... 186 1e-45
CP000239_1044(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com... 183 1e-44
CP000112_2349(CP000112|pid:none) Desulfovibrio desulfuricans G20... 180 1e-43
CP000482_3214(CP000482|pid:none) Pelobacter propionicus DSM 2379... 179 1e-43
CP000359_533(CP000359|pid:none) Deinococcus geothermalis DSM 113... 179 2e-43
CP000088_582(CP000088|pid:none) Thermobifida fusca YX, complete ... 178 3e-43
AB189462_1(AB189462|pid:none) Rhodobacter sphaeroides f. sp. den... 177 9e-43
CP000820_1038(CP000820|pid:none) Frankia sp. EAN1pec, complete g... 177 9e-43
CP001150_761(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 177 9e-43
CP001390_1201(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 177 9e-43
protein update 2009. 6.30
PSORT

psg: 0.75 gvh: 0.58 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.06 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for CFC289 is cyt

5' end seq. ID CFC289F
5' end seq.
>CFC289F.Seq
ACAAAGGATGAGCGTAAAGAAATGTGGGATTTCTATGCACCAGTACCAAGAATGAGAATT
AATTTAGGTATACGTAGACGTTTGGCACCATTGATGGGTGGTGATCAAAGAAAGATCGAG
TTAGCCTATTCTCTATTGTTTACATTACCAGGCTCACCAATCATTTACTATGGCGATGAA
ATTTGTATGGGTGATAATATTTGGTTAGAAGATCGTCATGGTGTACGTACTCCAATGCAA
TGGTCTGATCAACCACCCAATGGTGGTTTCTCAACTTCAAATAAACTCTATGCACCAGTT
ATCGATGATCCCGAATATGGCTATCAAAAAGTGAATGTTGTTGAATCTGAAAAAGATCCA
TCTTCACTCTATCAAGTAATTCGTCAAATGATTCAAAGAAGAAGAAAACATCTCTCATTT
GGTCATGGTTCATTCCAATGGGTAAACTCTGATAATCCACATATTGCTTCCTATATGAGA
ATTTGTGGTATTGATAGAATGTTTATTGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTT
ACTTTACATACTCATGCTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATT
TGTGGTGGTGGTGGATCACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCA
AGTGGTATTG----------
Length of 5' end seq. 670
3' end seq. ID CFC289Z
3' end seq.
>CFC289Z.Seq
----------TGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTTACTTTACATACTCATG
CTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATTTGTGGTGGTGGTGGAT
CACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCAAGTGGTATTGGTTCAA
GAATTGGCGGTACAAATACTAGTGGTGGTGGTGGTGGTGGTAATAATGATGGAATTTCAA
ATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGCAGGTGGTAATTTATCAG
GTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCATTATCAACAATCAAATA
TAAATAGACAACAACATCTTCAACCTTTAACAACCAAAGAAGAATATGAAGCATCAAAAG
ATACTAAACAACCATTTGTTTCATTTTTAAATGTTGAAACTGCTTCCTATGATGAACAAT
CACATTATTTAATAGATATTTTAACAGATTATCAAGTGATGGTAGATCAAAAAGGTTATG
TTACAATGGATTTAGAACCATACCAATTCTTTTGGTTCTCAATGGGTGAAATTACAACTT
TAATGGGTGATGGTTCAAAATCACGTGATCTTAGAAGAAAATCAATTCAAATTAATGATC
CAATTAATTTACATCATAGAAATTCTCATTTTGCNATCCAATTGANAATAAATAAATAAA
ATCATTTC
Length of 3' end seq. 718
Connected seq. ID CFC289P
Connected seq.
>CFC289P.Seq
ACAAAGGATGAGCGTAAAGAAATGTGGGATTTCTATGCACCAGTACCAAGAATGAGAATT
AATTTAGGTATACGTAGACGTTTGGCACCATTGATGGGTGGTGATCAAAGAAAGATCGAG
TTAGCCTATTCTCTATTGTTTACATTACCAGGCTCACCAATCATTTACTATGGCGATGAA
ATTTGTATGGGTGATAATATTTGGTTAGAAGATCGTCATGGTGTACGTACTCCAATGCAA
TGGTCTGATCAACCACCCAATGGTGGTTTCTCAACTTCAAATAAACTCTATGCACCAGTT
ATCGATGATCCCGAATATGGCTATCAAAAAGTGAATGTTGTTGAATCTGAAAAAGATCCA
TCTTCACTCTATCAAGTAATTCGTCAAATGATTCAAAGAAGAAGAAAACATCTCTCATTT
GGTCATGGTTCATTCCAATGGGTAAACTCTGATAATCCACATATTGCTTCCTATATGAGA
ATTTGTGGTATTGATAGAATGTTTATTGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTT
ACTTTACATACTCATGCTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATT
TGTGGTGGTGGTGGATCACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCA
AGTGGTATTG----------TGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTTACTTTA
CATACTCATGCTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATTTGTGGT
GGTGGTGGATCACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCAAGTGGT
ATTGGTTCAAGAATTGGCGGTACAAATACTAGTGGTGGTGGTGGTGGTGGTAATAATGAT
GGAATTTCAAATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGCAGGTGGT
AATTTATCAGGTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCATTATCAA
CAATCAAATATAAATAGACAACAACATCTTCAACCTTTAACAACCAAAGAAGAATATGAA
GCATCAAAAGATACTAAACAACCATTTGTTTCATTTTTAAATGTTGAAACTGCTTCCTAT
GATGAACAATCACATTATTTAATAGATATTTTAACAGATTATCAAGTGATGGTAGATCAA
AAAGGTTATGTTACAATGGATTTAGAACCATACCAATTCTTTTGGTTCTCAATGGGTGAA
ATTACAACTTTAATGGGTGATGGTTCAAAATCACGTGATCTTAGAAGAAAATCAATTCAA
ATTAATGATCCAATTAATTTACATCATAGAAATTCTCATTTTGCNATCCAATTGANAATA
AATAAATAAAATCATTTC
Length of connected seq. 1388
Full length Seq ID CFC289E
Full length Seq.
>CFC289E.Seq
ACAAAGGATGAGCGTAAAGAAATGTGGGATTTCTATGCACCAGTACCAAGAATGAGAATT
AATTTAGGTATACGTAGACGTTTGGCACCATTGATGGGTGGTGATCAAAGAAAGATCGAG
TTAGCCTATTCTCTATTGTTTACATTACCAGGCTCACCAATCATTTACTATGGCGATGAA
ATTTGTATGGGTGATAATATTTGGTTAGAAGATCGTCATGGTGTACGTACTCCAATGCAA
TGGTCTGATCAACCACCCAATGGTGGTTTCTCAACTTCAAATAAACTCTATGCACCAGTT
ATCGATGATCCCGAATATGGCTATCAAAAAGTGAATGTTGTTGAATCTGAAAAAGATCCA
TCTTCACTCTATCAAGTAATTCGTCAAATGATTCAAAGAAGAAGAAAACATCTCTCATTT
GGTCATGGTTCATTCCAATGGGTAAACTCTGATAATCCACATATTGCTTCCTATATGAGA
ATTTGTGGTATTGATAGAATGTTTATTGTTCAAAATCTTTCTGATCAAGTTCAAAAAGTT
ACTTTACATACTCATGCTACTCCAGTTTTACCATCATTATCAACTCATCAATCTTCAATT
TGTGGTGGTGGTGGATCACTTCATCGTAGAACTGCTAGTAATAGTGGTGATGGTATTGCA
AGTGGTATTGGTTCAAGAATTGGCGGTACAAATACTAGTGGTGGTGGTGGTGGTGGTAAT
AATGATGGAATTTCAAATATTACAAGTAATTTTGGTAATACTTTAACAGTTGATGGTGCA
GGTGGTAATTTATCAGGTTCAAAAGTTACACCAATTCCAACTAGAAAAGTTCATACTCAT
TATCAACAATCAAATATAAATAGACAACAACATCTTCAACCTTTAACAACCAAAGAAGAA
TATGAAGCATCAAAAGATACTAAACAACCATTTGTTTCATTTTTAAATGTTGAAACTGCT
TCCTATGATGAACAATCACATTATTTAATAGATATTTTAACAGATTATCAAGTGATGGTA
GATCAAAAAGGTTATGTTACAATGGATTTAGAACCATACCAATTCTTTTGGTTCTCAATG
GGTGAAATTACAACTTTAATGGGTGATGGTTCAAAATCACGTGATCTTAGAAGAAAATCA
ATTCAAATTAATGATCCAATTAATTTACATCATAGAAATTCTCATTTTGCNATCCAATTG
ANAATAAATAAATAAAATCATTTC
Length of full length seq. 1224