CFC283
Library CF
(Link to library)
Clone ID CFC283
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16381-1
Original site URL
Representative seq. ID CFC283P
(Link to Original site)
Representative DNA sequence
>CFC283 (CFC283Q) /CSM/CF/CFC2-D/CFC283Q.Seq.d/
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAAXXXXXXXXXXAGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTT
AAAAAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATC
AAACATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCA
AATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAA
CCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATT
GATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCA
GATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCA
AGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGAT
CGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGAT
GGTGATTATGATGGTGATTATGATGATGACAATTACTATGGTGATGATGACNATGATAAT
GATTGGG
sequence update 2001. 6. 1
Translated Amino Acid sequence
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKXKKK---

---GHECKHDEHGKECCVKKRHHDRCDLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNS
CARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDF
HRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGD
YDGDYDDDNYYGDDDXDNDW


Translated Amino Acid sequence (All Frames)
Frame A:
ivvfcsysn*isiqlkkvkikfvksicnkn**fkkkkxkkk---

---rs*mqt**tw*rmlr*ktss**m*pqm*erl*m*nqt*wlqmlcqensketml*tkf
mcqr*kmcchqrqnhlcktnl**yslssklplhmw**n*wckmcsrl*eskm**crmsrf
p*mc*ktwwylkl*i*stkttkip*lg*k*k**s*l**s*l****i*w*l*wp*r*l*w*
l*w*l***qllw***x***l

Frame B:
l*yfvhiqikyqyn*kklklnl*NQFVTKTSNLKKKKXKKK---

---GHECKHDEHGKECCVKKRHHDRCDLKCKRGYECKIKHDGSKCCVKRTPKRPCCKPNS
CARDEKCVATKDRIICVKPTCDNTRCPPNYHCICGDKIDGVKCVPDCKKARCDDVECPDF
HRCVERRGGILSCEFDPPRQPRSLDWAENENDDRDYDDRDYDDDEYDGDYDGRDGDYDGD
YDGDYDDDNYYGDDDXDNDW

Frame C:
csilfifklnintikks*n*ickinl*qklvi*kkkxqkk---

---vmnanmmnmvknvalknvimidvtsnvrevmnvksnmmapnvvsrelqrdhvvnqih
vpemknvlppktesfv*nqlviilvvlqitiayvviklmv*nvfqivrkqdvmmsnvqis
idvlkdvvvs*vvnlihqdnqdpliglkmkmmivtmmivtmmmmnmmvimmavtvtmmvi
mmvimmmtitmvmmtmimig

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL210 (SFL210Q) /CSM/SF/SFL2-A/SFL210Q.Seq.d/ 866 0.0
SFK812 (SFK812Q) /CSM/SF/SFK8-A/SFK812Q.Seq.d/ 866 0.0
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/ 866 0.0
SFI442 (SFI442Q) /CSM/SF/SFI4-B/SFI442Q.Seq.d/ 866 0.0
SFI183 (SFI183Q) /CSM/SF/SFI1-D/SFI183Q.Seq.d/ 866 0.0
SFH205 (SFH205Q) /CSM/SF/SFH2-A/SFH205Q.Seq.d/ 866 0.0
SFG675 (SFG675Q) /CSM/SF/SFG6-D/SFG675Q.Seq.d/ 866 0.0
SFG605 (SFG605Q) /CSM/SF/SFG6-A/SFG605Q.Seq.d/ 866 0.0
SFG208 (SFG208Q) /CSM/SF/SFG2-A/SFG208Q.Seq.d/ 866 0.0
SFG191 (SFG191Q) /CSM/SF/SFG1-D/SFG191Q.Seq.d/ 866 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein. 866 0.0 3
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds. 866 0.0 2
X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein. 80 1e-35 4
M34546|M34546.1 D.discoideum spore coat 60 (sp60) gene, 5' flank. 88 2e-13 1
AC117267|AC117267.2 Dictyostelium discoideum chromosome 2 map 5836255-5862024 strain AX4, complete sequence. 56 5e-08 4
U25144|U25144.1 Dictyostelium discoideum spore coat protein SP87 (PspD) gene, complete cds. 56 7e-08 3
AC139189|AC139189.1 Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence. 40 0.079 3
BX571707|BX571707.9 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-93K4. 46 0.73 1
AC019267|AC019267.3 Homo sapiens clone RP11-7M4, LOW-PASS SEQUENCE SAMPLING. 46 0.73 1
BX088711|BX088711.10 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-39A12. 46 0.73 1
dna update 2004. 5.25
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 340 3e-92
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region... 105 1e-21
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 104 2e-21
AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 92 2e-17
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 84 3e-15
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 63 1e-08
AF245486_1(AF245486|pid:none) Polysphondylium pallidum spore coa... 50 7e-05
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 49 2e-04
AM746676_8717(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 49 2e-04
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr... 47 8e-04
protein update 2009. 5.12
PSORT

psg: 0.22 gvh: 0.09 alm: 0.57 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.22 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for CFC283 is nuc

5' end seq. ID CFC283F
5' end seq.
>CFC283F.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID CFC283Z
3' end seq.
>CFC283Z.Seq
----------AGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTTAAAA
AACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATCAAAC
ATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCAAATT
CATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAACCAA
CTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATTGATG
GTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCAGATT
TCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCAAGAC
AACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGATCGTG
ACTATGATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGATGGTG
ATTATGATGGTGATTATGATGATGACAATTACTATGGTGATGATGACNATGATAATGATT
GGG
Length of 3' end seq. 593
Connected seq. ID CFC283P
Connected seq.
>CFC283P.Seq
ATTGTAGTATTTTGTTCATATTCAAATTAAATATCAATACAATTAAAAAAAGTTAAAATT
AAATTTGTAAAATCAATTTGTAACAAAAACTAGTAATTTAAAAAAAAAAAAANCAAAAAA
AAAA----------AGGTCATGAATGCAAACATGATGAACATGGTAAAGAATGTTGCGTT
AAAAAACGTCATCATGATAGATGTGACCTCAAATGTAAGAGAGGTTATGAATGTAAAATC
AAACATGATGGCTCCAAATGTTGTGTCAAGAGAACTCCAAAGAGACCATGTTGTAAACCA
AATTCATGTGCCAGAGATGAAAAATGTGTTGCCACCAAAGACAGAATCATTTGTGTAAAA
CCAACTTGTGATAATACTCGTTGTCCTCCAAATTACCATTGCATATGTGGTGATAAAATT
GATGGTGTAAAATGTGTTCCAGATTGTAAGAAAGCAAGATGTGATGATGTCGAATGTCCA
GATTTCCATAGATGTGTTGAAAGACGTGGTGGTATCTTAAGTTGTGAATTTGATCCACCA
AGACAACCAAGATCCCTTGATTGGGCTGAAAATGAAAATGATGATCGTGACTATGATGAT
CGTGACTATGATGATGATGAATATGATGGTGATTATGATGGCCGTGACGGTGACTATGAT
GGTGATTATGATGGTGATTATGATGATGACAATTACTATGGTGATGATGACNATGATAAT
GATTGGG
Length of connected seq. 717
Full length Seq ID -
Full length Seq. -
Length of full length seq. -