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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC279
Library CF
(Link to library)
Clone ID CFC279
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16477-1
Original site URL
Representative seq. ID CFC279P
(Link to Original site)
Representative DNA sequence 
>CFC279 (CFC279Q) /CSM/CF/CFC2-D/CFC279Q.Seq.d/
ACAATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAG
GTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTT
CTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAA
AAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATA
ACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTA
TGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAG
TTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAA
GAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATG
AATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAA
XXXXXXXXXXCTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGC
TTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTA
TGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTA
CTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGG
TCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCA
AACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCA
TAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAG
TCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTA
CATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTT
TAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGA
TGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKK
RRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAEV
VCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQ-
--

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKP
Translated Amino Acid sequence (All Frames) 
Frame A:
tikl*iiyktfkqivqp*y*vy*lt**yl*q*ligyiiyflgillnipkts*rwrpklqk
keeinlkkcqnkin*qkfwittlmi*i*kkmtqpivnlnl*vkmkklqvcavnvqinqlk
lyvcnvkmnfvqfvqlhsieevhvghiflkinmvknlimmn*invivnlhymakkmkkfk
---

---LKEYFSPNQSERGFSLALEHGIGGARLSHNHRKQYNYVYQSLSLWQHILHDMFKLWY
FAEIDLLCGHRYQLSNTGQGLNRIQQCPNVGKIMHSILRQTQKKVGDDWVGSSVIHLGDH
NVPNSLVFIDKYTQISRILSPIVLTIEYIPKITDPNLVAYIKNTFGGPQTLTKIILCDFF
KHAFDGSGADNFFDAGSCIDGRLTSAWQWSAQIAKKP

Frame B:
q*ncelytklsnr*fspnirfid*pnntcsnn*lgi*fifwaff*tyqkrvkggvqnfkk
kkrsi*rnvktk*inksfg*rp**yryrrr*lnqs*i*iye*r*rnsryvl*myrsts*s
cmfamsr*tlyslfnftp*krft*vtyf*k*twsrt*l**ik*t*sstsitwqrr*kss-
--

---srntlvqinqrevfhwlwnmalvvhvfltiivnnitmyinhspcgniffmiclnfgt
lqklifyadtdinyqtlvkv*ivfnnvqtlvklcivfyvklkkklvmiglvlplfiwvii
tfqtlwfssintlksles*vqsf*plnifqrspiqi*lltsktplvvhkl*pkssfvisl
ntlsmvvvpitfsmlalvlmvd*lllgngllksqrnl

Frame C:
NKIVNYIQNFQTDSSALILGLLINLIILVAIINWVYNLFSGHSSEHTKNELKVASKTSKK
RRDQSEEMSKQNKLTKVLDNDLDDIDIEEDDSTNRKFESMSEDEETPGMCCECTDQPAEV
VCLQCQDELCTVCSTSLHRRGSRRSHIFKNKHGQELDYDELNKRDRQPPLHGKEDEKVQ-
--

---qgil*sksirerffigfgtwhwwctsfsqss*ti*lcisitllvatyss*yv*tlvl
crn*sfmrtqisiikhwsrsksystmskrw*nya*ystsnskksw**lgwffrysfg*s*
rsklfgfhr*ihsnl*npksnrfnh*iyskdhrskfsclhqkhlwwstnfnqnhpl*fl*
trfrw*wcr*lfrcwlly*w*infclamvcsnrketl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO745 (VHO745Q) /CSM/VH/VHO7-B/VHO745Q.Seq.d/                       1229   0.0
VHK760 (VHK760Q) /CSM/VH/VHK7-C/VHK760Q.Seq.d/                       1229   0.0
VHI541 (VHI541Q) /CSM/VH/VHI5-B/VHI541Q.Seq.d/                       1229   0.0
VHA539 (VHA539Q) /CSM/VH/VHA5-B/VHA539Q.Seq.d/                       1229   0.0
SFK811 (SFK811Q) /CSM/SF/SFK8-A/SFK811Q.Seq.d/                       1229   0.0
SFF581 (SFF581Q) /CSM/SF/SFF5-D/SFF581Q.Seq.d/                       1229   0.0
CHQ507 (CHQ507Q) /CSM/CH/CHQ5-A/CHQ507Q.Seq.d/                       1229   0.0
VHC810 (VHC810Q) /CSM/VH/VHC8-A/VHC810Q.Seq.d/                       1227   0.0
CHL149 (CHL149Q) /CSM/CH/CHL1-C/CHL149Q.Seq.d/                       1221   0.0
CHM624 (CHM624Q) /CSM/CH/CHM6-A/CHM624Q.Seq.d/                       1205   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC104914|AC104914.9 Mus musculus chromosome 9, clone RP23-108E20, complete sequence.    38   0.002  9
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                  36   0.005  12
AC091873|AC091873.2 Homo sapiens chromosome 5 clone CTD-2577N22, complete sequence.    36   0.011  9
AC109452|AC109452.2 Homo sapiens chromosome 5 clone RP11-198A9, WORKING DRAFT SEQUENCE, 7 ordered pieces.    36   0.012  11
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    32   0.040  14
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    30   0.074  18
AC134426|AC134426.13 Mus musculus chromosome 1 clone RP24-342A12 map 1, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    50   0.078  1
AC145691|AC145691.2 Mus musculus chromosome 1 clone RP24-278B15 map 1, WORKING DRAFT SEQUENCE, 7 unordered pieces.    34   0.083  9
AC004688|AC004688.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    32   0.10   9
AC079310|AC079310.20 Homo sapiens 12 BAC RP11-850F7 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    38   0.10   6
dna update 2004. 5.25
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001575_110(CP001575|pid:none) Micromonas sp. RCC299 chromosome...   274   4e-72
CR382131_1131(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   254   5e-66
CR940353_528(CR940353|pid:none) Theileria annulata strain Ankara...   248   4e-64
CP001142_478(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1...   230   6e-59
AM910996_269(AM910996|pid:none) Plasmodium knowlesi strain H chr...   224   6e-57
AL844507_105(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...   224   6e-57
CP000081_414(CP000081|pid:none) Leishmania major chromosome 35, ...   209   1e-52
CR380956_239(CR380956|pid:none) Candida glabrata strain CBS138 c...   209   2e-52
CR382125_995(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   208   3e-52
AM502253_428(AM502253|pid:none) Leishmania infantum chromosome 35.    208   3e-52
protein update 2009. 5.12
PSORT 

 psg: 0.73  gvh: 0.50  alm: 0.11  top: 0.60  tms: 0.07  mit: 0.25  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.12  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFC279 is cyt
5' end seq. ID CFC279F
5' end seq. 
>CFC279F.Seq
ACAATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAG
GTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTT
CTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAA
AAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATA
ACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTA
TGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAG
TTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAA
GAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATG
AATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAA
----------
Length of 5' end seq. 540
3' end seq. ID CFC279Z
3' end seq. 
>CFC279Z.Seq
----------CTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGC
TTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTA
TGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTA
CTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGG
TCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCA
AACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCA
TAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAG
TCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTA
CATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTT
TAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGA
TGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTA
Length of 3' end seq. 644
Connected seq. ID CFC279P
Connected seq. 
>CFC279P.Seq
ACAATAAAATTGTGAATTATATACAAAACTTTCAAACAGATAGTTCAGCCCTAATATTAG
GTTTATTGATTAACCTAATAATACTTGTAGCAATAATTAATTGGGTATATAATTTATTTT
CTGGGCATTCTTCTGAACATACCAAAAACGAGTTAAAGGTGGCGTCCAAAACTTCAAAAA
AAAGAAGAGATCAATCTGAAGAAATGTCAAAACAAAATAAATTAACAAAAGTTTTGGATA
ACGACCTTGATGATATAGATATAGAAGAAGATGACTCAACCAATCGTAAATTTGAATCTA
TGAGTGAAGATGAAGAAACTCCAGGTATGTGCTGTGAATGTACAGATCAACCAGCTGAAG
TTGTATGTTTGCAATGTCAAGATGAACTTTGTACAGTTTGTTCAACTTCACTCCATAGAA
GAGGTTCACGTAGGTCACATATTTTTAAAAATAAACATGGTCAAGAACTTGATTATGATG
AATTAAATAAACGTGATCGTCAACCTCCATTACATGGCAAAGAAGATGAAAAAGTTCAAA
----------CTCAAGGAATACTTTAGTCCAAATCAATCAGAGAGAGGTTTTTCATTGGC
TTTGGAACATGGCATTGGTGGTGCACGTCTTTCTCACAATCATCGTAAACAATATAACTA
TGTATATCAATCACTCTCCTTGTGGCAACATATTCTTCATGATATGTTTAAACTTTGGTA
CTTTGCAGAAATTGATCTTTTATGCGGACACAGATATCAATTATCAAACACTGGTCAAGG
TCTAAATCGTATTCAACAATGTCCAAACGTTGGTAAAATTATGCATAGTATTCTACGTCA
AACTCAAAAAAAAGTTGGTGATGATTGGGTTGGTTCTTCCGTTATTCATTTGGGTGATCA
TAACGTTCCAAACTCTTTGGTTTTCATCGATAAATACACTCAAATCTCTAGAATCCTAAG
TCCAATCGTTTTAACCATTGAATATATTCCAAAGATCACCGATCCAAATTTAGTTGCTTA
CATCAAAAACACCTTTGGTGGTCCACAAACTTTAACCAAAATCATCCTTTGTGATTTCTT
TAAACACGCTTTCGATGGTAGTGGTGCCGATAACTTTTTCGATGCTGGCTCTTGTATTGA
TGGTAGATTAACTTCTGCTTGGCAATGGTCTGCTCAAATCGCAAAGAAACCTTA
Length of connected seq. 1184
Full length Seq ID -
Full length Seq. -
Length of full length seq. -