>CFC270 (CFC270Q) /CSM/CF/CFC2-C/CFC270Q.Seq.d/
XXXXXXXXXXATTCAGTTATGGTGGTCCGTTAAATGGCGGTTTAGCAAAATACATTATTC
TTGATGAAAACTCATGTTTAATACCACCAAAACATTACACAGATGAAGAATGCTCAACAT
TACCCATTGCAGCATGTACAGCGTGGTATTCGTTAATGAATGTCGGTGGAATTGAATCAA
AATTAAAATCAAATCAAACTGTTTTAATTCAAGGCACTGGCGGTGTCTCATTATTCGCTC
TTCAAATATCACATTCAATTGGTGCAAAAACTATACTTTTAACAAGTAATGAAGAAAAAA
AAGAAAGATTATTAAAAATGGGTGCCACTCATGTTATAAATTATAAAACCCATAATGAAT
GGGAGAAAGAAGTTATGAAATTAACAAATGATCAAGGTGTAAATCATGTACTTGATGTAG
TTGGTGGTGATTATATAAATAGATCAATACGTTGTAGTCATACACATGGTCATATCTATA
TGATTGGGTTTTTAAAAGAATCAAATGCTAAAATCAACCTTTTTGATGCTCTCTTTAAAA
GAATTAACCTACATGGTATTGGAGTTTCACCAAAAGATTCTTTCCAAGAAATGATTAATC
AATTATCAACAAATTTCATCTNTAACACCAGTAATTGNCACAATTTATGNNTCCTGGATG
CATTCAATTAAAGCATTTCAACATNTATCCAGGAGGTT

---FSYGGPLNGGLAKYIILDENSCLIPPKHYTDEECSTLPIAACTAWYSLMNVGGIESK
LKSNQTVLIQGTGGVSLFALQISHSIGAKTILLTSNEEKKERLLKMGATHVINYKTHNEW
EKEVMKLTNDQGVNHVLDVVGGDYINRSIRCSHTHGHIYMIGFLKESNAKINLFDALFKR
INLHGIGVSPKDSFQEMINQLSTNFIXNTSNXHNLXXLDAFN*sistxiqev

Frame A:
---FSYGGPLNGGLAKYIILDENSCLIPPKHYTDEECSTLPIAACTAWYSLMNVGGIESK
LKSNQTVLIQGTGGVSLFALQISHSIGAKTILLTSNEEKKERLLKMGATHVINYKTHNEW
EKEVMKLTNDQGVNHVLDVVGGDYINRSIRCSHTHGHIYMIGFLKESNAKINLFDALFKR
INLHGIGVSPKDSFQEMINQLSTNFIXNTSNXHNLXXLDAFN*sistxiqev


Frame B:
---svmvvr*mav*qntlflmkthv*yhqnitqmknaqhyplqhvqrgir**msvelnqn
*nqiklf*fkalavshyslfkyhiqlvqklyf*qvmkkkkkdy*kwvplml*iikpimng
rkkl*n*qmikv*imylm*lvvii*idqyvvvihmvisi*lgf*knqmlkstflmlslke
ltymvlefhqkilskk*linyqqissxtpvixtiyxswmhsikafqhxsrr


Frame C:
---qlwwsvkwrfskihys**klmfnttktlhr*rmlnithcsmysvvfvnecrwn*iki
kiksncfnsrhwrcliirssnitfnwcknytfnk**rkkrkiikngchscykl*np**mg
ersyeink*srcksct*csww*lyk*intl*sytwsylydwvfkrikc*nqpf*csl*kn
*ptwywsftkrffprnd*siinkfhl*hq*lxqfmxpgciqlkhfnxypgg

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC270 (CFC270Q) /CSM/CF/CFC2-C/CFC270Q.Seq.d/                       1287   0.0
CFI533 (CFI533Q) /CSM/CF/CFI5-B/CFI533Q.Seq.d/                       1191   0.0
SFD450 (SFD450Q) /CSM/SF/SFD4-C/SFD450Q.Seq.d/                       1170   0.0
SFF848 (SFF848Q) /CSM/SF/SFF8-B/SFF848Q.Seq.d/                       1166   0.0
SFJ256 (SFJ256Q) /CSM/SF/SFJ2-C/SFJ256Q.Seq.d/                       1003   0.0
SSJ896 (SSJ896Q) /CSM/SS/SSJ8-D/SSJ896Q.Seq.d/                        938   0.0
SSG762 (SSG762Q) /CSM/SS/SSG7-C/SSG762Q.Seq.d/                        815   0.0
CHO468 (CHO468Q) /CSM/CH/CHO4-C/CHO468Q.Seq.d/                        529   e-149
SFD250 (SFD250Q) /CSM/SF/SFD2-C/SFD250Q.Seq.d/                        361   9e-99
VHH486 (VHH486Q) /CSM/VH/VHH4-D/VHH486Q.Seq.d/                         38   0.17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    30   0.002  14
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   0.002  10
AC097259|AC097259.6 Homo sapiens X BAC RP11-594H22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    36   0.003  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   0.007  15
AE015940|AE015940.1 Clostridium tetani E88, section 5 of 10 of the complete genome.    40   0.018  8
AC137827|AC137827.18 Medicago truncatula clone mth2-20g23, complete sequence.    40   0.023  7
AY376688|AY376688.1 Crinipellis perniciosa mitochondrion, complete genome.    36   0.032  9
AX344561|AX344561.1 Sequence 12 from Patent WO0200932.             36   0.041  8
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    32   0.049  12
AC021859|AC021859.4 Homo sapiens chromosome UL clone RP11-585K14, WORKING DRAFT SEQUENCE, 13 unordered pieces.    42   0.051  7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008934_1634(AP008934|pid:none) Staphylococcus saprophyticus su...   183   4e-45
FP236842_2507(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9...   174   2e-42
CP000113_2217(CP000113|pid:none) Myxococcus xanthus DK 1622, com...   148   2e-34
BA000012_3024(BA000012|pid:none) Mesorhizobium loti MAFF303099 D...   147   4e-34
CP000698_18(CP000698|pid:none) Geobacter uraniireducens Rf4, com...   145   1e-33
CP001029_3298(CP001029|pid:none) Methylobacterium populi BJ001, ...   144   3e-33
CP000786_3034(CP000786|pid:none) Leptospira biflexa serovar Pato...   143   4e-33
CP000908_3105(CP000908|pid:none) Methylobacterium extorquens PA1...   142   9e-33
CP000075_1152(CP000075|pid:none) Pseudomonas syringae pv. syring...   141   2e-32
CP001298_3320(CP001298|pid:none) Methylobacterium chloromethanic...   141   2e-32

 psg: 0.81  gvh: 0.52  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFC270 is nuc

>CFC270Z.Seq
----------ATTCAGTTATGGTGGTCCGTTAAATGGCGGTTTAGCAAAATACATTATTC
TTGATGAAAACTCATGTTTAATACCACCAAAACATTACACAGATGAAGAATGCTCAACAT
TACCCATTGCAGCATGTACAGCGTGGTATTCGTTAATGAATGTCGGTGGAATTGAATCAA
AATTAAAATCAAATCAAACTGTTTTAATTCAAGGCACTGGCGGTGTCTCATTATTCGCTC
TTCAAATATCACATTCAATTGGTGCAAAAACTATACTTTTAACAAGTAATGAAGAAAAAA
AAGAAAGATTATTAAAAATGGGTGCCACTCATGTTATAAATTATAAAACCCATAATGAAT
GGGAGAAAGAAGTTATGAAATTAACAAATGATCAAGGTGTAAATCATGTACTTGATGTAG
TTGGTGGTGATTATATAAATAGATCAATACGTTGTAGTCATACACATGGTCATATCTATA
TGATTGGGTTTTTAAAAGAATCAAATGCTAAAATCAACCTTTTTGATGCTCTCTTTAAAA
GAATTAACCTACATGGTATTGGAGTTTCACCAAAAGATTCTTTCCAAGAAATGATTAATC
AATTATCAACAAATTTCATCTNTAACACCAGTAATTGNCACAATTTATGNNTCCTGGATG
CATTCAATTAAAGCATTTCAACATNTATCCAGGAGGTT