CFC254
Library CF
(Link to library)
Clone ID CFC254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15589-1
Original site URL
Representative seq. ID CFC254F
(Link to Original site)
Representative DNA sequence
>CFC254 (CFC254Q) /CSM/CF/CFC2-C/CFC254Q.Seq.d/
ATAAATATTTATTTTTATTTTTATTTTTTTTTATAATTTTCCAACATAACAATATCTAAT
TATAATTTGGTATTAATAGTGTAATATTTGTTTTTTTTTTTTTTNAAAAAGGGGGGANTT
GGGTTTANCTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
kylflflfffiifqhnni*l*FGINSVIFVFFFFXKGGXWVX---


Translated Amino Acid sequence (All Frames)
Frame A:
iniyfyfyffl*fsnitisnynlvliv*ylffffxkkggxgfx---


Frame B:
*ififififfynfpt*qyliiiwy**cnicffffxkrgxlgl---


Frame C:
kylflflfffiifqhnni*l*FGINSVIFVFFFFXKGGXWVX---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN192 (VFN192Q) /CSM/VF/VFN1-D/VFN192Q.Seq.d/ 100 1e-20
VFN105 (VFN105Q) /CSM/VF/VFN1-A/VFN105Q.Seq.d/ 100 1e-20
VFL703 (VFL703Q) /CSM/VF/VFL7-A/VFL703Q.Seq.d/ 100 1e-20
VFJ870 (VFJ870Q) /CSM/VF/VFJ8-C/VFJ870Q.Seq.d/ 100 1e-20
VFJ151 (VFJ151Q) /CSM/VF/VFJ1-C/VFJ151Q.Seq.d/ 100 1e-20
VFA731 (VFA731Q) /CSM/VF/VFA7-B/VFA731Q.Seq.d/ 100 1e-20
SSC647 (SSC647Q) /CSM/SS/SSC6-B/SSC647Q.Seq.d/ 100 1e-20
SFI646 (SFI646Q) /CSM/SF/SFI6-B/SFI646Q.Seq.d/ 100 1e-20
SFG838 (SFG838Q) /CSM/SF/SFG8-B/SFG838Q.Seq.d/ 100 1e-20
CFK151 (CFK151Q) /CSM/CF/CFK1-C/CFK151Q.Seq.d/ 100 1e-20

own update 2001.11.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L16578|L16578.1 Dictyostelium discoideum HIV1 TAT-binding protein homologous protein mRNA, complete cds. 100 1e-17 1
CE688122|CE688122.1 tigr-gss-dog-17000368525821 Dog Library Canis familiaris genomic, genomic survey sequence. 40 0.56 2
AC102198|AC102198.3 Mus musculus clone RP24-499H13, WORKING DRAFT SEQUENCE, 6 unordered pieces. 42 1.9 1
AF286886|AF286886.3 Homo sapiens chromosome 8 clone CTA-396G5 map 8q21-q23, complete sequence. 42 1.9 1
AP004388|AP004388.2 Homo sapiens genomic DNA, chromosome 8q23, clone:KB1239C7. 42 1.9 1
AC021237|AC021237.5 Homo sapiens chromosome 8, clone RP11-122A21, complete sequence. 42 1.9 1
AC091844|AC091844.1 Homo sapiens chromosome 5 clone CTD-2188O14, WORKING DRAFT SEQUENCE, 14 unordered pieces. 36 2.6 3
AC019795|AC019795.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces. 36 3.5 2
BS000075|BS000075.1 Pan troglodytes chromosome 22 clone:RP43-111A01, map 22, complete sequences. 38 6.7 2
AP000472|AP000472.2 Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B258A5, LL56-APP region. 38 7.0 2
dna update 2004. 5.25
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 105,280,159
protein update 2009. 5.12
PSORT

psg: 1.03 gvh: 0.55 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.29 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: extracellular, including cell wall
16.0 %: mitochondrial
16.0 %: nuclear
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for CFC254 is cyt

5' end seq. ID CFC254F
5' end seq.
>CFC254F.Seq
ATAAATATTTATTTTTATTTTTATTTTTTTTTATAATTTTCCAACATAACAATATCTAAT
TATAATTTGGTATTAATAGTGTAATATTTGTTTTTTTTTTTTTTNAAAAAGGGGGGANTT
GGGTTTANCT----------
Length of 5' end seq. 130
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -