>CFC252 (CFC252Q) /CSM/CF/CFC2-C/CFC252Q.Seq.d/
TTTGTTTAAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTT
TATTTGTACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTG
GTCAAGTAGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTCAGGTG
TTTCAACAGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCAT
ATAGAGATGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGAT
TATTGGGAGCACCAAAAGAGTATCTCCCAGTCGATGGTATTCCAGAGTTCAATAAATTAT
CAGCCAAACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTC
AAGCATTGTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTAC
CAGCCGGGTACCGTAGXXXXXXXXXXTGGCAGTGTCTTTGTGTTGCATCTCTGCGCCCAC
AACCCAACTGGTGTCGACCCAACCCACGAGCAATGGAATATCATCGCCGATGTCATGAGA
GAAAAGAACCATATCCCATTCATGGATTGCGCCTATCAAGGCTATGCAAGTGGTGATTTG
GACTACGATGCTTACAGTGCACGTCTCTTTTTAAATCGTGGTTTCGAGATGTTCTCTGCT
CAATCATACTCCAAGAACTTCGGTCTCTATGGTGAAAGAACTGGTGCCCTCACCATTGTT
TCTCATCGTGAAGATGTAATTCCAAAGATGTTATCTCAACTCAAAATGGATATCCGTGCA
ATGTACTCCTCCCCACCAACCCATGGTGCTCGTCTCGTCACCACCGTTCTCTCTGACCCA
GAATTAACTGCACTTTGGGTCAAAGAACTTAAAGAAATGTCTGGTAGAATCAAAGATGTT
CGTCAAAAGGTTTTAGATGCTCTCATCGCCCGTAAAGTACCAGGTAATTGGGAACATATC
GTCAATCAAATTGGTATGTTCACCTATACAGGTTTAACCAAACCACAAGTTGATATCCTT
GTAAATAAATATCATATTTATCTTTTAGGTAGTGGTAGAGTTTCTTTAGCTGGTTTAAAT
AATAAAAATATAGATTATTTTGCNATGCAATTTTAGATGCTG

CLKHKKTYMEKVSERIKNSLFVPIDNNNMQDSINSNEVSGQVATLFANVPLGPVDPISGV
STAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPVDGIPEFNKLS
AKLLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGYR---

---GSVFVLHLCAHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYS
ARLFLNRGFEMFSAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPP
THGARLVTTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGM
FTYTGLTKPQVDILVNKYHIYLLGSGRVSLAGLNNKNIDYFAMQF*ml

Frame A:
fv*nikrhiwkkfqkelkilylyq*iiiickiq*iqmklvvk*qlylqmyh*dq*iqfqv
fqqlskqtltqek*ihqlehiemkmvnhty*nvylkqrkdywehqksisqsmvfqssiny
qpnfymemqwlakrrew*qfkhcqvpvhyvlvsfsfvniyqpgtv---

---wqclcvaslrpqpnwcrpnprameyhrrcherkepypihglrlsrlckw*fglrclq
ctslfkswfrdvlcsiilqelrslw*knwcphhcfss*rcnskdvistqngypcnvllpt
npwcssrhhrsl*princtlgqrt*rnvw*nqrcsskgfrcshrp*str*lgtyrqsnwy
vhlyrfnqtts*ypck*isylsfr*w*sffswfk**kyrlfcxailda

Frame B:
lfkt*kdiygksfrkn*kffictnr***yarfnkfk*s*wsssnfickctirtsrsnfrc
fnsfqsrh*pkksryiswsi*r*kw*tiriemci*srekiigstkrvspsrwysrvq*ii
sqtfiwrcngwqreengnsssivryrcitywyhfhs*iftsrvp*---

---GSVFVLHLCAHNPTGVDPTHEQWNIIADVMREKNHIPFMDCAYQGYASGDLDYDAYS
ARLFLNRGFEMFSAQSYSKNFGLYGERTGALTIVSHREDVIPKMLSQLKMDIRAMYSSPP
THGARLVTTVLSDPELTALWVKELKEMSGRIKDVRQKVLDALIARKVPGNWEHIVNQIGM
FTYTGLTKPQVDILVNKYHIYLLGSGRVSLAGLNNKNIDYFAMQF*ml

Frame C:
CLKHKKTYMEKVSERIKNSLFVPIDNNNMQDSINSNEVSGQVATLFANVPLGPVDPISGV
STAFKADTDPRKVDTSVGAYRDENGKPYVLKCVFEAEKRLLGAPKEYLPVDGIPEFNKLS
AKLLYGDAMVGKEKRMVTVQALSGTGALRIGIIFIRKYLPAGYR---

---avslccisapttqlvstqptsngisspms*ekrtishswiapikamqvviwttmltv
hvsf*ivvsrcsllnhtprtsvsmvkelvpsplflivkm*fqrcylnskwisvqctpphq
pmvlvssppfsltqn*lhfgsknlkkclveskmfvkrf*mlsspvkyqvignissiklvc
spiqv*pnhklisl*iniifif*vvvefl*lv*iiki*iilxcnfrc

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC252 (CFC252Q) /CSM/CF/CFC2-C/CFC252Q.Seq.d/                       2278   0.0
SFI736 (SFI736Q) /CSM/SF/SFI7-B/SFI736Q.Seq.d/                       1334   0.0
SFG113 (SFG113Q) /CSM/SF/SFG1-A/SFG113Q.Seq.d/                       1334   0.0
SFD772 (SFD772Q) /CSM/SF/SFD7-C/SFD772Q.Seq.d/                       1334   0.0
CFI814 (CFI814Q) /CSM/CF/CFI8-A/CFI814Q.Seq.d/                       1334   0.0
VFM287 (VFM287Q) /CSM/VF/VFM2-D/VFM287Q.Seq.d/                       1330   0.0
VFM103 (VFM103Q) /CSM/VF/VFM1-A/VFM103Q.Seq.d/                       1326   0.0
SFE248 (SFE248Q) /CSM/SF/SFE2-B/SFE248Q.Seq.d/                       1324   0.0
SLE206 (SLE206Q) /CSM/SL/SLE2-A/SLE206Q.Seq.d/                       1320   0.0
VFM209 (VFM209Q) /CSM/VF/VFM2-A/VFM209Q.Seq.d/                       1316   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AL929353|AL929353.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 3/4.    36   3e-05  18
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   2e-04  13
AP003185|AP003185.1 Clostridium perfringens DNA, complete genome, section 1/10.    42   4e-04  15
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    34   0.001  11
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    40   0.002  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           40   0.002  16
CA924915|CA924915.1 MTU7TL.P11.D10 Aspen leaf cDNA Library Populus tremuloides cDNA, mRNA sequence.    38   0.004  2
AU001466|AU001466.1 Bombyx mori cDNA, clone fbm0460f.              54   0.005  1
CR382399|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5.    34   0.005  13
BX005248|BX005248.13 Zebrafish DNA sequence from clone CH211-155H12 in linkage group 8.    52   0.007  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54SF7) RecName: Full=Aspartate aminotransferase, cytoplasmic; ...   448   e-124
AP007161_754(AP007161|pid:none) Aspergillus oryzae RIB40 genomic...   204   2e-69
(P28011) RecName: Full=Aspartate aminotransferase 1;          EC...   254   5e-66
X61577_1(X61577|pid:none) M.sativa aat-1 mRNA for aspartate amin...   254   5e-66
D45076_1(D45076|pid:none) Panicum miliaceum mRNA for plastidic a...   254   5e-66
AE013599_2314(AE013599|pid:none) Drosophila melanogaster chromos...   252   2e-65
AE013599_2315(AE013599|pid:none) Drosophila melanogaster chromos...   252   2e-65
AY157306_1(AY157306|pid:none) Oryza sativa aspartate aminotransf...   251   3e-65
EF676186_1(EF676186|pid:none) Picea sitchensis clone WS02717_N16...   250   8e-65
BT071434_1(BT071434|pid:none) Picea sitchensis clone WS02911_N16...   250   8e-65

 psg: 0.47  gvh: 0.42  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for CFC252 is nuc

>CFC252F.Seq
TTTGTTTAAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTT
TATTTGTACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTG
GTCAAGTAGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTCAGGTG
TTTCAACAGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCAT
ATAGAGATGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGAT
TATTGGGAGCACCAAAAGAGTATCTCCCAGTCGATGGTATTCCAGAGTTCAATAAATTAT
CAGCCAAACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTC
AAGCATTGTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTAC
CAGCCGGGTACCGTAG----------

>CFC252Z.Seq
----------TGGCAGTGTCTTTGTGTTGCATCTCTGCGCCCACAACCCAACTGGTGTCG
ACCCAACCCACGAGCAATGGAATATCATCGCCGATGTCATGAGAGAAAAGAACCATATCC
CATTCATGGATTGCGCCTATCAAGGCTATGCAAGTGGTGATTTGGACTACGATGCTTACA
GTGCACGTCTCTTTTTAAATCGTGGTTTCGAGATGTTCTCTGCTCAATCATACTCCAAGA
ACTTCGGTCTCTATGGTGAAAGAACTGGTGCCCTCACCATTGTTTCTCATCGTGAAGATG
TAATTCCAAAGATGTTATCTCAACTCAAAATGGATATCCGTGCAATGTACTCCTCCCCAC
CAACCCATGGTGCTCGTCTCGTCACCACCGTTCTCTCTGACCCAGAATTAACTGCACTTT
GGGTCAAAGAACTTAAAGAAATGTCTGGTAGAATCAAAGATGTTCGTCAAAAGGTTTTAG
ATGCTCTCATCGCCCGTAAAGTACCAGGTAATTGGGAACATATCGTCAATCAAATTGGTA
TGTTCACCTATACAGGTTTAACCAAACCACAAGTTGATATCCTTGTAAATAAATATCATA
TTTATCTTTTAGGTAGTGGTAGAGTTTCTTTAGCTGGTTTAAATAATAAAAATATAGATT
ATTTTGCNATGCAATTTTAGATGCTG

>CFC252P.Seq
TTTGTTTAAAACATAAAAAGACATATATGGAAAAAGTTTCAGAAAGAATTAAAAATTCTT
TATTTGTACCAATAGATAATAATAATATGCAAGATTCAATAAATTCAAATGAAGTTAGTG
GTCAAGTAGCAACTTTATTTGCAAATGTACCATTAGGACCAGTAGATCCAATTTCAGGTG
TTTCAACAGCTTTCAAAGCAGACACTGACCCAAGAAAAGTAGATACATCAGTTGGAGCAT
ATAGAGATGAAAATGGTAAACCATACGTATTGAAATGTGTATTTGAAGCAGAGAAAAGAT
TATTGGGAGCACCAAAAGAGTATCTCCCAGTCGATGGTATTCCAGAGTTCAATAAATTAT
CAGCCAAACTTTTATATGGAGATGCAATGGTTGGCAAAGAGAAGAGAATGGTAACAGTTC
AAGCATTGTCAGGTACCGGTGCATTACGTATTGGTATCATTTTCATTCGTAAATATTTAC
CAGCCGGGTACCGTAG----------TGGCAGTGTCTTTGTGTTGCATCTCTGCGCCCAC
AACCCAACTGGTGTCGACCCAACCCACGAGCAATGGAATATCATCGCCGATGTCATGAGA
GAAAAGAACCATATCCCATTCATGGATTGCGCCTATCAAGGCTATGCAAGTGGTGATTTG
GACTACGATGCTTACAGTGCACGTCTCTTTTTAAATCGTGGTTTCGAGATGTTCTCTGCT
CAATCATACTCCAAGAACTTCGGTCTCTATGGTGAAAGAACTGGTGCCCTCACCATTGTT
TCTCATCGTGAAGATGTAATTCCAAAGATGTTATCTCAACTCAAAATGGATATCCGTGCA
ATGTACTCCTCCCCACCAACCCATGGTGCTCGTCTCGTCACCACCGTTCTCTCTGACCCA
GAATTAACTGCACTTTGGGTCAAAGAACTTAAAGAAATGTCTGGTAGAATCAAAGATGTT
CGTCAAAAGGTTTTAGATGCTCTCATCGCCCGTAAAGTACCAGGTAATTGGGAACATATC
GTCAATCAAATTGGTATGTTCACCTATACAGGTTTAACCAAACCACAAGTTGATATCCTT
GTAAATAAATATCATATTTATCTTTTAGGTAGTGGTAGAGTTTCTTTAGCTGGTTTAAAT
AATAAAAATATAGATTATTTTGCNATGCAATTTTAGATGCTG