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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC240
Library CF
(Link to library)
Clone ID CFC240
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFC240P
(Link to Original site)
Representative DNA sequence 
>CFC240 (CFC240Q) /CSM/CF/CFC2-B/CFC240Q.Seq.d/
ATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAATTTAAAAAATCNNCTTTTTNGAAAA
AAAAAAXXXXXXXXXXTTAGNNCTTANATTAANAGGTGGTATGCAAATNTTNTAAAAGAC
CNTCCCCGGTAAGACTATTACNCTCGAAGTGAAGGTAGTGNCAACATTGAGAAATGTAAA
ACCAAAGATTCAAGATAAAGAAGGTATNCCACCAGATCANCAACGTTTCATTTCGCTGGT
AANCAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTC
CACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAG
ACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAA
GACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTC
AGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTC
GAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAATAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
FFKFIFIIQILNSYFIFLYIVTFHKKKKKKKFKKSXFXKKK---

---XXXIXRWYANXXKDXPR*dyyxrsegsxniekcktkdsr*rryxtrsxtfhfagxql
edgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdke
gippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitleve
gsdnienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmq
ifvktltgktitlevegsdnienvktkiqdk*
Translated Amino Acid sequence (All Frames) 
Frame A:
ifsnsfllyky*ihilffyil*hfikkkkkknlknxlfxkkk---

---lxlxlxggmqxx*ktxpgktitlevkvvxtlrnvkpkiqdkegxppdxqrfislvxn
*kmvvlslitiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktk
kvshqtnkd*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhskl
kvlitlrmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvc
kfl*klslvkplhsklkvvttlrm*kqkfktnn

Frame B:
ffqihfyytnikfifyffiycnis*kkkkkki*kixfxekk---

---*xlx*xvvckxxkrpspvrllxsk*r*xqh*em*nqrfkikkvxhqixnvsfrw*xi
rrwsysl*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqr
ryptrptkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*
rf**h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwya
nfcknshw*nhytrs*r**qh*ecknknsrqi

Frame C:
FFKFIFIIQILNSYFIFLYIVTFHKKKKKKKFKKSXFXKKK---

---XXXIXRWYANXXKDXPR*dyyxrsegsxniekcktkdsr*rryxtrsxtfhfagxql
edgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdke
gippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitleve
gsdnienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmq
ifvktltgktitlevegsdnienvktkiqdk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC240 (CFC240Q) /CSM/CF/CFC2-B/CFC240Q.Seq.d/                       1534   0.0
CFI562 (CFI562Q) /CSM/CF/CFI5-C/CFI562Q.Seq.d/                       1443   0.0
CFC508 (CFC508Q) /CSM/CF/CFC5-A/CFC508Q.Seq.d/                       1443   0.0
CFK312 (CFK312Q) /CSM/CF/CFK3-A/CFK312Q.Seq.d/                       1433   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1421   0.0
AFG624 (AFG624Q) /CSM/AF/AFG6-A/AFG624Q.Seq.d/                       1419   0.0
SFD892 (SFD892Q) /CSM/SF/SFD8-D/SFD892Q.Seq.d/                       1417   0.0
CFK335 (CFK335Q) /CSM/CF/CFK3-B/CFK335Q.Seq.d/                       1415   0.0
CFJ521 (CFJ521Q) /CSM/CF/CFJ5-A/CFJ521Q.Seq.d/                       1411   0.0
CFF682 (CFF682Q) /CSM/CF/CFF6-D/CFF682Q.Seq.d/                       1411   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1279   0.0    5
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1263   0.0    5
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1263   0.0    5
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   747   0.0    4
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   656   0.0    3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   622   0.0    3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   622   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   644   0.0    3
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   192   e-103  5
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-102  5
dna update 2004. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL662988_4(AL662988|pid:none) Oryza sativa genomic DNA, chromoso...   397   e-119
AY954394_1(AY954394|pid:none) Oryza sativa (japonica cultivar-gr...   396   e-119
AJ965270_1(AJ965270|pid:none) Polyplastron multivesiculatum part...   387   e-119
AJ965271_1(AJ965271|pid:none) Polyplastron multivesiculatum part...   387   e-119
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   429   e-119
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   429   e-119
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   429   e-119
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   423   e-117
AF034789_1(AF034789|pid:none) Amoeba proteus polyubiquitin mRNA,...   378   e-116
Z22614_3(Z22614|pid:none) T.pyriformis polyubiquitin and 5S rRNA...   386   e-114
protein update 2009. 5.12
PSORT 

 psg: 0.96  gvh: 0.32  alm: 0.26  top: 1.03  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.50  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for CFC240 is cyt
5' end seq. ID CFC240F
5' end seq. 
>CFC240F.Seq
ATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAATTTAAAAAATCNNCTTTTTNGAAAA
AAAAAA----------
Length of 5' end seq. 126
3' end seq. ID CFC240Z
3' end seq. 
>CFC240Z.Seq
----------TTAGNNCTTANATTAANAGGTGGTATGCAAATNTTNTAAAAGACCNTCCC
CGGTAAGACTATTACNCTCGAAGTGAAGGTAGTGNCAACATTGAGAAATGTAAAACCAAA
GATTCAAGATAAAGAAGGTATNCCACCAGATCANCAACGTTTCATTTCGCTGGTAANCAA
TTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTG
GTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATC
ACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAA
GAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGT
CGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTA
AGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTT
GAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCA
CCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCT
GATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATG
CAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGAC
AACATTGAGAATGTAAAAACAAAAATTCAAGACAAATAAC
Length of 3' end seq. 810
Connected seq. ID CFC240P
Connected seq. 
>CFC240P.Seq
ATTTTTTCAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATA
TTGTAACATTTCATAAAAAAAAAAAAAAAAAAAAATTTAAAAAATCNNCTTTTTNGAAAA
AAAAAA----------TTAGNNCTTANATTAANAGGTGGTATGCAAATNTTNTAAAAGAC
CNTCCCCGGTAAGACTATTACNCTCGAAGTGAAGGTAGTGNCAACATTGAGAAATGTAAA
ACCAAAGATTCAAGATAAAGAAGGTATNCCACCAGATCANCAACGTTTCATTTCGCTGGT
AANCAATTAGAAGATGGTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTC
CACTTGGTCCTCAGATTAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAG
ACCATCACTCTTGAAGTTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAA
GACAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAA
GATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTC
AGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTC
GAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGT
ATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACT
CTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGT
GGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGT
AGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAATAAC
Length of connected seq. 936
Full length Seq ID -
Full length Seq. -
Length of full length seq. -