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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC228
Library CF
(Link to library)
Clone ID CFC228
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16241-1
Original site URL
Representative seq. ID CFC228P
(Link to Original site)
Representative DNA sequence 
>CFC228 (CFC228Q) /CSM/CF/CFC2-B/CFC228Q.Seq.d/
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATTXXXXXXXXXXTCAGAAAGATTGGATAATTCAAACAAAGGATTTAGAAAGATTTT
AGTCATCTTTAGACCATTTGCATTCATTTTTGGTTTCATCTTTATCTTGGTCTCTTTATT
GATCATTATCTCCATCGTCTTATCGTTGGTCGATAAAATCTCAAGTAGTGTCTGTGGTTC
GGCTTGCGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCGATATCATTCTCAC
CAAATTGGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCAT
TTATTCTTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATAT
GTTTGAATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATT
AATGTTAAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTAT
GTATGGTGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCACC
AACAGATCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTAT
TTCTTTCTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTTT
AGGTTTAGCTGTTTCAATATTTAAAAGAAGACCATCTGCTGCTTTAAGTTATTCTGGNAT
AGNANAAGAAGAGATTTAAAAATAAATAAATAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
I---

---SERLDNSNKGFRKILVIFRPFAFIFGFIFILVSLLIIISIVLSLVDKISSSVCGSAC
GFLSTYPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLWINMFE
FGYRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTD
LCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSAALSYSGIXX
EEI*k*inn
Translated Amino Acid sequence (All Frames) 
Frame A:
iaivsqnythhknkrdkknrknkk*kklyikflfiyk*nkskkknvshfsrvdsicrcss
hvnciklfys*illr*t*kwknynnhfsnwtyintfmcyayss*yfkcfnnvt**wytnf
tifnlskn*rc*nvilyiiwinfrsftnfsticifls*ri**kysnmfkslcrm*iynif
hi---

---SERLDNSNKGFRKILVIFRPFAFIFGFIFILVSLLIIISIVLSLVDKISSSVCGSAC
GFLSTYPQLKNPFDIILTKLAPYFPLDYIIIGGLIFFIYSCTLSGITRIGIRFLWINMFE
FGYRKTFPQGLLLASVLLMLSNLCLNMQIVNLAPRYVMYGAQVYLNGTSVIPCTINAPTD
LCIMSEIGLLTSRIQLGISFFGIVFYYGTWVIVATFILGLAVSIFKRRPSAALSYSGIXX
EEI*k*inn

Frame B:
lqlfpkithttkikeirktekiknkknsi*NSYLYINKTKVKKRMFPISVGWIAFAGVLL
TLIALNYFIVKYYSDKHESGKITTIISVIGLTLTLLCVMLIPVDILNVSTMSHSDGTQIS
PYSISQRTEGVKMLYYILYGSILGVSLILVPFAYFYHEEYDENIPTCSRVYAGCKFTIFF
I---

---qkdwiiqtkdlerf*ssldhlhsflvsslswsly*slspssyrwsiksqvvsvvrla
vsfqlihn*kihsisfspnwphishwiisllvv*yfsfilvlylvslelvldfyglicln
ldivklshkvyylhqcy*c*viyv*ickl*i*hqdmlcmvlksi*mvlqlyhvqlmhqqi
fvlcqklvf*lhvfn*vflslvlyfimvlg*llqllf*v*lfqylkedhlll*vilx*xk
krfknk*ii

Frame C:
cncfpklhtpqk*kr*ekqkk*kikktlykiliyi*ikqk*kkecfpfq*gg*hlqvffs
r*lh*iil*lnitqinmkveklqqsfq*ldlh*hfyvlclfqlif*mfqqchivmvhkfh
hiqslkelkvlkcyiiyymdqf*efh*f*yhlhifimknmmkifqhvqefmqdvnlqyfs
y---

---rkig*fkqri*kdfshl*ticihfwfhlylglfidhylhrlivgr*nlk*clwfglr
fpfnlstieksiryhshqigpifpiglyhywwfnifhlflyfiwyh*nwy*ifmd*yv*i
wis*nfptrfitcisvinvk*fmfkyanckfstkicyvwcsslfewyfsytmyn*ctnrs
lyyvrnwsfnftysiryfflwycillwylgnccnfyfrfscfni*kkticcfklfwxxxr
rdlkink*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC228 (CFC228Q) /CSM/CF/CFC2-B/CFC228Q.Seq.d/                       2230   0.0
CFF842 (CFF842Q) /CSM/CF/CFF8-B/CFF842Q.Seq.d/                       2137   0.0
CFH203 (CFH203Q) /CSM/CF/CFH2-A/CFH203Q.Seq.d/                       1445   0.0
CHB356 (CHB356Q) /CSM/CH/CHB3-C/CHB356Q.Seq.d/                       1386   0.0
CFF416 (CFF416Q) /CSM/CF/CFF4-A/CFF416Q.Seq.d/                       1368   0.0
CFC519 (CFC519Q) /CSM/CF/CFC5-A/CFC519Q.Seq.d/                       1366   0.0
CFI671 (CFI671Q) /CSM/CF/CFI6-C/CFI671Q.Seq.d/                       1360   0.0
AFJ767 (AFJ767Q) /CSM/AF/AFJ7-C/AFJ767Q.Seq.d/                       1358   0.0
AFI883 (AFI883Q) /CSM/AF/AFI8-D/AFI883Q.Seq.d/                       1356   0.0
AFC408 (AFC408Q) /CSM/AF/AFC4-A/AFC408Q.Seq.d/                       1348   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             36   1e-08  20
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    38   2e-08  20
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    36   2e-08  20
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   3e-08  21
AE014848|AE014848.1 Plasmodium falciparum 3D7 chromosome 12, section 5 of 9 of the complete sequence.    42   4e-08  15
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    36   4e-08  18
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    36   5e-08  14
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    34   7e-08  20
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2.         40   2e-07  12
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           44   2e-07  13
dna update 2004. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54KD1) RecName: Full=Probable lysosomal cobalamin transporter;...   317   6e-85
(A7RM45) RecName: Full=Probable lysosomal cobalamin transporter;       94   1e-17
(Q5ZI05) RecName: Full=Probable lysosomal cobalamin transporter;...    86   2e-15
BC044020_1(BC044020|pid:none) Xenopus laevis Probable lysosomal ...    85   5e-15
(Q7SYR6) RecName: Full=Probable lysosomal cobalamin transporter;...    85   5e-15
(Q5PR61) RecName: Full=Probable lysosomal cobalamin transporter;...    84   1e-14
(Q0VGV9) RecName: Full=Probable lysosomal cobalamin transporter;...    84   1e-14
CT025894_3(CT025894|pid:none) Zebrafish DNA sequence from clone ...    83   2e-14
(Q4R5E3) RecName: Full=Probable lysosomal cobalamin transporter;...    83   2e-14
(Q8K0B2) RecName: Full=Probable lysosomal cobalamin transporter;...    83   2e-14
protein update 2009. 5.12
PSORT 

 psg: 0.58  gvh: 0.58  alm: 0.10  top: 0.23  tms: 0.53  mit: 0.33  mip: 0.04
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: plasma membrane
	 32.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi

>> prediction for CFC228 is pla
5' end seq. ID CFC228F
5' end seq. 
>CFC228F.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATT----------
Length of 5' end seq. 546
3' end seq. ID CFC228Z
3' end seq. 
>CFC228Z.Seq
----------TCAGAAAGATTGGATAATTCAAACAAAGGATTTAGAAAGATTTTAGTCAT
CTTTAGACCATTTGCATTCATTTTTGGTTTCATCTTTATCTTGGTCTCTTTATTGATCAT
TATCTCCATCGTCTTATCGTTGGTCGATAAAATCTCAAGTAGTGTCTGTGGTTCGGCTTG
CGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCGATATCATTCTCACCAAATT
GGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCATTTATTC
TTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATATGTTTGA
ATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATTAATGTT
AAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTATGTATGG
TGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCACCAACAGA
TCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTATTTCTTT
CTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTTTAGGTTT
AGCTGTTTCAATATTTAAAAGAAGACCATCTGCTGCTTTAAGTTATTCTGGNATAGNANA
AGAAGAGATTTAAAAATAAATAAATAATA
Length of 3' end seq. 739
Connected seq. ID CFC228P
Connected seq. 
>CFC228P.Seq
ATTGCAATTGTTTCCCAAAATTACACACACCACAAAAATAAAAGAGATAAGAAAAACAGA
AAAAATAAAAAATAAAAAAAACTCTATATAAAATTCTTATTTATATATAAATAAAACAAA
AGTAAAAAAAAGAATGTTTCCCATTTCAGTAGGGTGGATAGCATTTGCAGGTGTTCTTCT
CACGTTAATTGCATTAAATTATTTTATAGTTAAATATTACTCAGATAAACATGAAAGTGG
AAAAATTACAACAATCATTTCAGTAATTGGACTTACATTAACACTTTTATGTGTTATGCT
TATTCCAGTTGATATTTTAAATGTTTCAACAATGTCACATAGTGATGGTACACAAATTTC
ACCATATTCAATCTCTCAAAGAACTGAAGGTGTTAAAATGTTATATTATATATTATATGG
ATCAATTTTAGGAGTTTCACTAATTTTAGTACCATTTGCATATTTTTATCATGAAGAATA
TGATGAAAATATTCCAACATGTTCAAGAGTTTATGCAGGATGTAAATTTACAATATTTTT
CATATT----------TCAGAAAGATTGGATAATTCAAACAAAGGATTTAGAAAGATTTT
AGTCATCTTTAGACCATTTGCATTCATTTTTGGTTTCATCTTTATCTTGGTCTCTTTATT
GATCATTATCTCCATCGTCTTATCGTTGGTCGATAAAATCTCAAGTAGTGTCTGTGGTTC
GGCTTGCGGTTTCCTTTCAACTTATCCACAATTGAAAAATCCATTCGATATCATTCTCAC
CAAATTGGCCCCATATTTCCCATTGGATTATATCATTATTGGTGGTTTAATATTTTTCAT
TTATTCTTGTACTTTATCTGGTATCACTAGAATTGGTATTAGATTTTTATGGATTAATAT
GTTTGAATTTGGATATCGTAAAACTTTCCCACAAGGTTTATTACTTGCATCAGTGTTATT
AATGTTAAGTAATTTATGTTTAAATATGCAAATTGTAAATTTAGCACCAAGATATGTTAT
GTATGGTGCTCAAGTCTATTTGAATGGTACTTCAGTTATACCATGTACAATTAATGCACC
AACAGATCTTTGTATTATGTCAGAAATTGGTCTTTTAACTTCACGTATTCAATTAGGTAT
TTCTTTCTTTGGTATTGTATTTTATTATGGTACTTGGGTAATTGTTGCAACTTTTATTTT
AGGTTTAGCTGTTTCAATATTTAAAAGAAGACCATCTGCTGCTTTAAGTTATTCTGGNAT
AGNANAAGAAGAGATTTAAAAATAAATAAATAATA
Length of connected seq. 1285
Full length Seq ID -
Full length Seq. -
Length of full length seq. -