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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC223
Library CF
(Link to library)
Clone ID CFC223
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U14174-1
Original site URL
Representative seq. ID CFC223E
(Link to Original site)
Representative DNA sequence 
>CFC223 (CFC223Q) /CSM/CF/CFC2-A/CFC223Q.Seq.d/
AAAATAATAATTAAATAAAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTT
GAAAATAGAGAGGATGGACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTA
CCATGGAGTAAGAATACAATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGAT
GAATATACATTCAAAATCTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAAT
CGTAAAGGTAAAACCATCTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTT
TTCAAACCTAAAAAGGTTTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGAT
GATATTGACGAGGAGGATGACGACGGTAAACCAGCAGAACCAATAATAACTCAAAAGAAA
ACCATCTCTGGTGAATTCACAGTACCATATATTTCCGACGAGAATGGTGACGAAGCCCCA
ACTGTAAGATACACTATCAATACCACTGCCGATAATGATGAAACTAAACAATCCATAAAC
ATGGTTCAATCTTTACTTAAGTCACACGGTGTACCATTTGTACAATCACAATGTCAAGAA
TTTATTAAATTATTAAAAAAAGAATTTGTTTCAAAAAAACAAGTTGAACAATCTCAACAA
CAACAAACTGCCAACACTACTACCAACACTACCACCACCACCAATACAGTACCAAAGGTA
ACATCATCAACTGTTATTTTTAATTCAACACCAACTAAAAAACCAACTACTAAAACATTG
AAATTAAAAGAAGAATTCCAATGTTCACCAATGGATGCATATGATGTATTTGTAAACATT
AATAAATTAAGAGCATTCACTCAAAGTGATTGTACTTTTGAAAATGAAGAAGGCGGTAAA
TTTTCATTATATGGTGGTAGTATTCAAGGTGTAAATAAAACTTTATCACCAGGCTCAAAG
ATTGTTCAAACTTGGAGATTGGATAATTGGAGTAAAGGTGTCGAATCTCAAGTTACCATT
ACATTCAGTGTTGATGGTAAACCTTTAACAAATGTTGAAATCGTTCAAACTGGAATTCCA
ATTGACGGGTTTGAAAAAACTGAAGAAGGTTGGAAGAGAAATATTTTAGATCGTATAAAA
CATACTTTTTCTTACTCTTCTAAAATCTTTTAATAAATTAAATTAAAATT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNTIGGLFDKKVIQETD
EYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKVLPPPPTTKSKGAAD
DIDEEDDDGKPAEPIITQKKTISGEFTVPYISDENGDEAPTVRYTINTTADNDETKQSIN
MVQSLLKSHGVPFVQSQCQEFIKLLKKEFVSKKQVEQSQQQQTANTTTNTTTTTNTVPKV
TSSTVIFNSTPTKKPTTKTLKLKEEFQCSPMDAYDVFVNINKLRAFTQSDCTFENEEGGK
FSLYGGSIQGVNKTLSPGSKIVQTWRLDNWSKGVESQVTITFSVDGKPLTNVEIVQTGIP
IDGFEKTEEGWKRNILDRIKHTFSYSSKIF**iklk
Translated Amino Acid sequence (All Frames) 
Frame A:
kiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNTIGGLFDKKVIQETD
EYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKVLPPPPTTKSKGAAD
DIDEEDDDGKPAEPIITQKKTISGEFTVPYISDENGDEAPTVRYTINTTADNDETKQSIN
MVQSLLKSHGVPFVQSQCQEFIKLLKKEFVSKKQVEQSQQQQTANTTTNTTTTTNTVPKV
TSSTVIFNSTPTKKPTTKTLKLKEEFQCSPMDAYDVFVNINKLRAFTQSDCTFENEEGGK
FSLYGGSIQGVNKTLSPGSKIVQTWRLDNWSKGVESQVTITFSVDGKPLTNVEIVQTGIP
IDGFEKTEEGWKRNILDRIKHTFSYSSKIF**iklk


Frame B:
k**lnkkwqk*ekvtqdgllkiermdimlmvgigqrkivyhgvriqlvdysikrlfkkqm
nihskshqlqlfqvnvqqiivkvkpsfymn*mlk*igksfsnlkrfyhhhqplnlkalqm
iltrrmttvnqqnq**lkrkpslvnsqyhifptrmvtkpql*dtlsiplpimmklnnp*t
wfnlylshtvyhlynhnvknllny*kknlfqknklnnlnnnklptllptlppppiqyqr*
hhqllfliqhqlknqllkh*n*kknsnvhqwmhmmyl*tlin*ehslkvivllkmkkavn
fhymvvvfkv*iklyhqaqrlfklgdwiigvkvsnlklplhsvlmvnl*qmlksfklefq
ltglkklkkvgreif*iv*nilfltllksfnkln*n


Frame C:
nnn*ikngksrrr*pkmdc*k*rgwt*c*wlalvrerlftme*eynwwiir*kgysrnr*
iyiqnlinsscfr*mysk*s*r*nhlfi*trc*nelgsrfqt*kgfttttnh*i*rrcr*
y*rgg*rr*tsrtnnnskenhlw*ihstiyfrrew*rspnckihyqyhcr***n*tihkh
gsift*vtrctictitmsriy*iikkricfkkts*tistttncqhyyqhyhhhqystkgn
iincyf*fntn*ktny*nieikrripmftngci*cickh**iksihsk*lyf*k*rrr*i
fiiww*ysrck*nfitrlkdcsnleig*le*rcrissyhyiqc*w*tfnkc*nrsnwnsn
*rv*kn*rrleekyfrsyktyffllf*nllin*iki
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC223 (CFC223Q) /CSM/CF/CFC2-A/CFC223Q.Seq.d/                       2276   0.0
CFB195 (CFB195Q) /CSM/CF/CFB1-D/CFB195Q.Seq.d/                       2139   0.0
SFB723 (SFB723Q) /CSM/SF/SFB7-A/SFB723Q.Seq.d/                       1241   0.0
SFJ442 (SFJ442Q) /CSM/SF/SFJ4-B/SFJ442Q.Seq.d/                       1215   0.0
SFA671 (SFA671Q) /CSM/SF/SFA6-C/SFA671Q.Seq.d/                       1215   0.0
SFI360 (SFI360Q) /CSM/SF/SFI3-C/SFI360Q.Seq.d/                       1201   0.0
CFB194 (CFB194Q) /CSM/CF/CFB1-D/CFB194Q.Seq.d/                       1201   0.0
CFI170 (CFI170Q) /CSM/CF/CFI1-C/CFI170Q.Seq.d/                       1199   0.0
CFC190 (CFC190Q) /CSM/CF/CFC1-D/CFC190Q.Seq.d/                       1199   0.0
SFG650 (SFG650Q) /CSM/SF/SFG6-C/SFG650Q.Seq.d/                       1191   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    44   6e-15  23
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   8e-12  25
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.    38   2e-10  17
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   6e-09  19
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    42   3e-08  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   4e-08  20
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    38   5e-08  16
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36   8e-08  19
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   1e-07  15
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   1e-07  16
dna update 2004. 3. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DB6) RecName: Full=Activator of 90 kDa heat shock protein AT...   607   e-172
AB158647_1(AB158647|pid:none) Bombyx mori Bm44, Bm44 mRNA for Bm...   181   3e-44
AE014134_3649(AE014134|pid:none) Drosophila melanogaster chromos...   167   7e-40
FN315349_1(FN315349|pid:none) Schistosoma japonicum isolate Anhu...   163   1e-38
AY815067_1(AY815067|pid:none) Schistosoma japonicum SJCHGC01423 ...   163   1e-38
BC041491_1(BC041491|pid:none) Xenopus laevis activator of heat s...   159   2e-37
FN357618_14(FN357618|pid:none) Schistosoma mansoni genome sequen...   154   8e-36
FN357618_15(FN357618|pid:none) Schistosoma mansoni genome sequen...   154   8e-36
BC055523_1(BC055523|pid:none) Danio rerio AHA1, activator of hea...   145   4e-33
EU643484_5(EU643484|pid:none) Adineta vaga clone Av198_A basic r...   133   1e-29
protein update 2009. 6.30
PSORT 

 psg: 0.39  gvh: 0.20  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: mitochondrial

>> prediction for CFC223 is cyt
5' end seq. ID CFC223F
5' end seq. 
>CFC223F.Seq
AAAATAATAATTAAATAAAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTT
GAAAATAGAGAGGATGGACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTA
CCATGGAGTAAGAATACAATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGAT
GAATATACATTCAAAATCTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAAT
CGTAAAGGTAAAACCATCTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTT
TTCAAACCTAAAAAGGTTTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGAT
GATATTGACGAGGAGGATGACGACGGTAAACCAGCAGAACCAATAATAACTCAAAAGAAA
ACCATCTCTGGTGAATTCACAGTACCATATATTTCCGACGAGAATGGTGACGAAGCCCCA
ACTGTAAGATACACTATCAATACCACTGCCGATAATGATGAAACTAAACAATCCATAAAC
ATGGTTCAATCTTTACTTAAGTCACACGGTGTACCATTTGTACAATCACAATGTCAAGAA
TTTATTAAATTATTAAAAAAAG----------
Length of 5' end seq. 622
3' end seq. ID CFC223Z
3' end seq. 
>CFC223Z.Seq
----------GACGAAGCCCCAACTGTAAGATACACTATCAATACCACTGCCGATAATGA
TGAAACTAAACAATCCATAAACATGGTTCAATCTTTACTTAAGTCACACGGTGTACCATT
TGTACAATCACAATGTCAAGAATTTATTAAATTATTAAAAAAAGAATTTGTTTCAAAAAA
ACAAGTTGAACAATCTCAACAACAACAAACTGCCAACACTACTACCAACACTACCACCAC
CACCAATACAGTACCAAAGGTAACATCATCAACTGTTATTTTTAATTCAACACCAACTAA
AAAACCAACTACTAAAACATTGAAATTAAAAGAAGAATTCCAATGTTCACCAATGGATGC
ATATGATGTATTTGTAAACATTAATAAATTAAGAGCATTCACTCAAAGTGATTGTACTTT
TGAAAATGAAGAAGGCGGTAAATTTTCATTATATGGTGGTAGTATTCAAGGTGTAAATAA
AACTTTATCACCAGGCTCAAAGATTGTTCAAACTTGGAGATTGGATAATTGGAGTAAAGG
TGTCGAATCTCAAGTTACCATTACATTCAGTGTTGATGGTAAACCTTTAACAAATGTTGA
AATCGTTCAAACTGGAATTCCAATTGACGGGTTTGAAAAAACTGAAGAAGGTTGGAAGAG
AAATATTTTAGATCGTATAAAACATACTTTTTCTTACTCTTCTAAAATCTTTTAATAAAT
TAAATTAAAATT
Length of 3' end seq. 722
Connected seq. ID CFC223P
Connected seq. 
>CFC223P.Seq
AAAATAATAATTAAATAAAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTT
GAAAATAGAGAGGATGGACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTA
CCATGGAGTAAGAATACAATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGAT
GAATATACATTCAAAATCTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAAT
CGTAAAGGTAAAACCATCTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTT
TTCAAACCTAAAAAGGTTTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGAT
GATATTGACGAGGAGGATGACGACGGTAAACCAGCAGAACCAATAATAACTCAAAAGAAA
ACCATCTCTGGTGAATTCACAGTACCATATATTTCCGACGAGAATGGTGACGAAGCCCCA
ACTGTAAGATACACTATCAATACCACTGCCGATAATGATGAAACTAAACAATCCATAAAC
ATGGTTCAATCTTTACTTAAGTCACACGGTGTACCATTTGTACAATCACAATGTCAAGAA
TTTATTAAATTATTAAAAAAAG----------GACGAAGCCCCAACTGTAAGATACACTA
TCAATACCACTGCCGATAATGATGAAACTAAACAATCCATAAACATGGTTCAATCTTTAC
TTAAGTCACACGGTGTACCATTTGTACAATCACAATGTCAAGAATTTATTAAATTATTAA
AAAAAGAATTTGTTTCAAAAAAACAAGTTGAACAATCTCAACAACAACAAACTGCCAACA
CTACTACCAACACTACCACCACCACCAATACAGTACCAAAGGTAACATCATCAACTGTTA
TTTTTAATTCAACACCAACTAAAAAACCAACTACTAAAACATTGAAATTAAAAGAAGAAT
TCCAATGTTCACCAATGGATGCATATGATGTATTTGTAAACATTAATAAATTAAGAGCAT
TCACTCAAAGTGATTGTACTTTTGAAAATGAAGAAGGCGGTAAATTTTCATTATATGGTG
GTAGTATTCAAGGTGTAAATAAAACTTTATCACCAGGCTCAAAGATTGTTCAAACTTGGA
GATTGGATAATTGGAGTAAAGGTGTCGAATCTCAAGTTACCATTACATTCAGTGTTGATG
GTAAACCTTTAACAAATGTTGAAATCGTTCAAACTGGAATTCCAATTGACGGGTTTGAAA
AAACTGAAGAAGGTTGGAAGAGAAATATTTTAGATCGTATAAAACATACTTTTTCTTACT
CTTCTAAAATCTTTTAATAAATTAAATTAAAATT
Length of connected seq. 1344
Full length Seq ID CFC223E
Full length Seq. 
>CFC223E.Seq
AAAATAATAATTAAATAAAAAATGGCAAAAGTAGGAGAAGGTGACCCAAGATGGATTGTT
GAAAATAGAGAGGATGGACATAATGTTAATGGTTGGCATTGGTCAGAGAAAGATTGTTTA
CCATGGAGTAAGAATACAATTGGTGGATTATTCGATAAAAAGGTTATTCAAGAAACAGAT
GAATATACATTCAAAATCTCATCAACTCCAGTTGTTTCAGGTGAATGTACAGCAAATAAT
CGTAAAGGTAAAACCATCTTTTTATATGAACTAGATGTTAAAATGAATTGGGAAGTCGTT
TTCAAACCTAAAAAGGTTTTACCACCACCACCAACCACTAAATCTAAAGGCGCTGCAGAT
GATATTGACGAGGAGGATGACGACGGTAAACCAGCAGAACCAATAATAACTCAAAAGAAA
ACCATCTCTGGTGAATTCACAGTACCATATATTTCCGACGAGAATGGTGACGAAGCCCCA
ACTGTAAGATACACTATCAATACCACTGCCGATAATGATGAAACTAAACAATCCATAAAC
ATGGTTCAATCTTTACTTAAGTCACACGGTGTACCATTTGTACAATCACAATGTCAAGAA
TTTATTAAATTATTAAAAAAAGAATTTGTTTCAAAAAAACAAGTTGAACAATCTCAACAA
CAACAAACTGCCAACACTACTACCAACACTACCACCACCACCAATACAGTACCAAAGGTA
ACATCATCAACTGTTATTTTTAATTCAACACCAACTAAAAAACCAACTACTAAAACATTG
AAATTAAAAGAAGAATTCCAATGTTCACCAATGGATGCATATGATGTATTTGTAAACATT
AATAAATTAAGAGCATTCACTCAAAGTGATTGTACTTTTGAAAATGAAGAAGGCGGTAAA
TTTTCATTATATGGTGGTAGTATTCAAGGTGTAAATAAAACTTTATCACCAGGCTCAAAG
ATTGTTCAAACTTGGAGATTGGATAATTGGAGTAAAGGTGTCGAATCTCAAGTTACCATT
ACATTCAGTGTTGATGGTAAACCTTTAACAAATGTTGAAATCGTTCAAACTGGAATTCCA
ATTGACGGGTTTGAAAAAACTGAAGAAGGTTGGAAGAGAAATATTTTAGATCGTATAAAA
CATACTTTTTCTTACTCTTCTAAAATCTTTTAATAAATTAAATTAAAATT
Length of full length seq. 1190