CFC218 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

CFC218
Library	CF (Link to library)
Clone ID	CFC218 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U14180-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/CF/CFC2-A/CFC218Q.Seq.d/
Representative seq. ID	CFC218E (Link to Original site)
Representative DNA sequence	>CFC218 (CFC218Q) /CSM/CF/CFC2-A/CFC218Q.Seq.d/ GAAATAATACAAAAATAACAATCATTGTTTTCGATAATGAATTATATTGGGAACAACAAA AGAAACTTAAATCATCTACTCAAGATTCAAAATTATTAATTCATAGTCAACCAATTGCTG ATAGTGATATTAATAATAATAACAATAATAACAATAATAATAATAATAATAATAATAATG AATTAATATCTAGTGGTCAAAATAATTCAATTTTAACTCATAGACATCATATAAGCGCAG ATAATACTTTAGCTCAAAGTGAAATTACACCAACAACTCATTTAGATATTAATAATATTC ATTCAATGCAACCAACTCCAATGATTGGTGAAAATCAATTACCAATTAATACACCAAGCT CAGCCACTGGTGCCGATTCAATCAATAGTGGTTCAATTGCAACAAGTTCAAATCAAAACA ATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTGTAATCAATGGAAAGAACA GATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGATTAAAGGTTTTATTAAGTG AATGTTCAAATTATGATCTTTTAATTGTACCATTTGAACCAACTAAACAAAATATCAACT CTTTCCCATCTTTCCATGTACCAGGTATTGACATTATGAAGAAATCTTTATCAATGGTTC ATTTACCAGGTTATAAAAAGAATCCTTCCACTAACTCTCCATTACCTGAAAGAGATATTG AGCATCTTGAAGAGTTTGATGATCATCCACATATTAAAAATGGTAGTACAAATAATCTAT CTGCTTCTGCCCATCGTGGTGGTTCGTTCAGTAAATCTGGTAACCATGGTAGCTCTGGTA ATCTTAACAATAGTGGTAGTGCTAATCCATTGGGTAAAGCTGGCGAAATCACTGATGGTC ATGTAGAAGTTGAAATGGATAATCTTCGTTCTAGTGATGATTCTGATCAGAATCTTGATG ATGAACCTTATTGGTCAAAATGTCCAATCTCTTCTTTGGTAATTCACCATAAAGATACTA TCCCACAGGTTATTAGCGAATTAAATAATAAGAAGAATGCTGAAGAAAATGATACCAATA AAAATAGTAATAATAGTAATAATGATAATAACAATGATATTAACAATAATAATATCATTT TACCAGACGATACTCCATACGAAGTNATCCATCNATCTTAAAATAGTCAAACGAT
sequence update	2001. 6. 9
Translated Amino Acid sequence	NNTKITIIVFDNELYWEQQKKLKSSTQDSKLLIHSQPIADSDINNNNNNNNNNNNNNNNE LISSGQNNSILTHRHHISADNTLAQSEITPTTHLDINNIHSMQPTPMIGENQLPINTPSS ATGADSINSGSIATSSNQNNVVGFKKFETHLESVINGKNRSSINVIYKPQRSRLKVLLSE CSNYDLLIVPFEPTKQNINSFPSFHVPGIDIMKKSLSMVHLPGYKKNPSTNSPLPERDIE HLEEFDDHPHIKNGSTNNLSASAHRGGSFSKSGNHGSSGNLNNSGSANPLGKAGEITDGH VEVEMDNLRSSDDSDQNLDDEPYWSKCPISSLVIHHKDTIPQVISELNNKKNAEENDTNK NSNNSNNDNNNDINNNNIILPDDTPYEVIHXS*nsqt
Translated Amino Acid sequence (All Frames)	Frame A: eiiqkqslfsimnyignnkrnlnhllkiqnyfivnqlliviliiitiitiiiiiiiim nylvvkiiqflidiiaqiillkvklhqqliiliifiqcnqlqlvkinyqlihqa qplvpiqsivvqlqqvqiktmlldlkslklislsmertdhqlmsinhnvqdrfyv nvqimiflyhlnqlnkistlshlsmyqvltlrnlyqwfiyqvikrilpltlhylkeil silkslmiihilkmvvqiiylllpivvvrsvnlvtmvalviltivvvlihwvklakslmv mklkwiifvlvmilirilmmnligqnvqsllwftikilshrllaniirrmlkkmipi kiviivimiitmiltiiisfyqtilhtkxsixlkivkr Frame B: kyknnnhcfriilgttketiiysrfkiinsstncyqq********* iniwskfnfnstsykrryfssknytnnsfryysfnatnsndwksitnytkl shwcrfnqwfncnkfkskqccwikvnsfrvcnqwkeqiincnltttfkikgfik* mfklsfnctitntkyqlfpifpctryhyeeifingsftrlkesfhlsitkry asrvsstykwyksicfcpswwfvqiwpwlwsqwcsigswrnhws crsngssf**fses**tllvkmsnlffgnspryyptgyrikeecrkyq k********qyqyhftrrysirsxpsilksnd Frame C: NNTKITIIVFDNELYWEQQKKLKSSTQDSKLLIHSQPIADSDINNNNNNNNNNNNNNNNE LISSGQNNSILTHRHHISADNTLAQSEITPTTHLDINNIHSMQPTPMIGENQLPINTPSS ATGADSINSGSIATSSNQNNVVGFKKFETHLESVINGKNRSSINVIYKPQRSRLKVLLSE CSNYDLLIVPFEPTKQNINSFPSFHVPGIDIMKKSLSMVHLPGYKKNPSTNSPLPERDIE HLEEFDDHPHIKNGSTNNLSASAHRGGSFSKSGNHGSSGNLNNSGSANPLGKAGEITDGH VEVEMDNLRSSDDSDQNLDDEPYWSKCPISSLVIHHKDTIPQVISELNNKKNAEENDTNK NSNNSNNDNNNDINNNNIILPDDTPYEVIHXS*nsqt
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value CFC218 (CFC218Q) /CSM/CF/CFC2-A/CFC218Q.Seq.d/ 1711 0.0 CFJ884 (CFJ884Q) /CSM/CF/CFJ8-D/CFJ884Q.Seq.d/ 1150 0.0 CHA742 (CHA742Q) /CSM/CH/CHA7-B/CHA742Q.Seq.d/ 954 0.0 VSC659 (VSC659Q) /CSM/VS/VSC6-C/VSC659Q.Seq.d/ 664 0.0 SLE806 (SLE806Q) /CSM/SL/SLE8-A/SLE806Q.Seq.d/ 496 e-139 SSE673 (SSE673Q) /CSM/SS/SSE6-D/SSE673Q.Seq.d/ 317 2e-85 SLK331 (SLK331Q) /CSM/SL/SLK3-B/SLK331Q.Seq.d/ 62 2e-08 VSF495 (VSF495Q) /CSM/VS/VSF4-D/VSF495Q.Seq.d/ 40 0.076 VFH250 (VFH250Q) /CSM/VF/VFH2-C/VFH250Q.Seq.d/ 40 0.076 SSC488 (SSC488Q) /CSM/SS/SSC4-D/SSC488Q.Seq.d/ 40 0.076
own update	2002.11.16
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AL844506\|AL844506.1 Plasmodium falciparum chromosome 7. 34 3e-04 26 AE016969\|AE016969.1 Mycoplasma gallisepticum strain R section 3 of 4 of the complete genome. 36 0.005 13 AC117176\|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence. 32 0.012 16 AC005139\|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces. 34 0.021 16 AE014818\|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 34 0.024 12 AE014016\|AE014016.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 1 of 2 of the complete genome. 38 0.042 13 CA995454\|CA995454.1 rg29d05.y1 Meloidogyne hapla J2 SL1 TOPO v1 Meloidogyne hapla cDNA 5', mRNA sequence. 42 0.074 3 AE014017\|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome. 32 0.091 14 AC016393\|AC016393.3 Homo sapiens chromosome 12 clone RP11-199C7 map 12, * SEQUENCING IN PROGRESS *, 91 unordered pieces. 40 0.12 5 BX276091\|BX276091.6 Zebrafish DNA sequence from clone CH211-267P9 in linkage group 5. 38 0.16 7
dna update	2004. 3. 2
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AB239909_1(AB239909\|pid:none) Dictyostelium discoideum scdA gene... 39 0.47 CR382132_984(CR382132\|pid:none) Yarrowia lipolytica strain CLIB1... 38 0.81 S28831(S28831)microtubule-associated protein H1 (clone KS18) - l... 35 6.9 AM473545_1(AM473545\|pid:none) Vitis vinifera contig VV78X043451.... 35 6.9 CP000885_2566(CP000885\|pid:none) Clostridium phytofermentans ISD... 34 9.0 AF198499_1(AF198499\|pid:none) Nicotiana tabacum anther-specific ... 34 9.0
protein update	2009. 2.28
PSORT	psg: 0.49 gvh: 0.40 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: nuclear 36.0 %: cytoplasmic 12.0 %: mitochondrial 4.0 %: vacuolar 4.0 %: vesicles of secretory system >> prediction for CFC218 is nuc
5' end seq. ID	CFC218F
5' end seq.	>CFC218F.Seq GAAATAATACAAAAATAACAATCATTGTTTTCGATAATGAATTATATTGGGAACAACAAA AGAAACTTAAATCATCTACTCAAGATTCAAAATTATTAATTCATAGTCAACCAATTGCTG ATAGTGATATTAATAATAATAACAATAATAACAATAATAATAATAATAATAATAATAATG AATTAATATCTAGTGGTCAAAATAATTCAATTTTAACTCATAGACATCATATAAGCGCAG ATAATACTTTAGCTCAAAGTGAAATTACACCAACAACTCATTTAGATATTAATAATATTC ATTCAATGCAACCAACTCCAATGATTGGTGAAAATCAATTACCAATTAATACACCAAGCT CAGCCACTGGTGCCGATTCAATCAATAGTGGTTCAATTGCAACAAGTTCAAATCAAAACA ATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTGTAATCAATGGAAAGAACA GATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGANTA----------
Length of 5' end seq.	524
3' end seq. ID	CFC218Z
3' end seq.	>CFC218Z.Seq ----------TCAAAACAATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTG TAATCAATGGAAAGAACAGATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGAT TAAAGGTTTTATTAAGTGAATGTTCAAATTATGATCTTTTAATTGTACCATTTGAACCAA CTAAACAAAATATCAACTCTTTCCCATCTTTCCATGTACCAGGTATTGACATTATGAAGA AATCTTTATCAATGGTTCATTTACCAGGTTATAAAAAGAATCCTTCCACTAACTCTCCAT TACCTGAAAGAGATATTGAGCATCTTGAAGAGTTTGATGATCATCCACATATTAAAAATG GTAGTACAAATAATCTATCTGCTTCTGCCCATCGTGGTGGTTCGTTCAGTAAATCTGGTA ACCATGGTAGCTCTGGTAATCTTAACAATAGTGGTAGTGCTAATCCATTGGGTAAAGCTG GCGAAATCACTGATGGTCATGTAGAAGTTGAAATGGATAATCTTCGTTCTAGTGATGATT CTGATCAGAATCTTGATGATGAACCTTATTGGTCAAAATGTCCAATCTCTTCTTTGGTAA TTCACCATAAAGATACTATCCCACAGGTTATTAGCGAATTAAATAATAAGAAGAATGCTG AAGAAAATGATACCAATAAAAATAGTAATAATAGTAATAATGATAATAACAATGATATTA ACAATAATAATATCATTTTACCAGACGATACTCCATACGAAGTNATCCATCNATCTTAAA ATAGTCAAACGAT
Length of 3' end seq.	783
Connected seq. ID	CFC218P
Connected seq.	>CFC218P.Seq GAAATAATACAAAAATAACAATCATTGTTTTCGATAATGAATTATATTGGGAACAACAAA AGAAACTTAAATCATCTACTCAAGATTCAAAATTATTAATTCATAGTCAACCAATTGCTG ATAGTGATATTAATAATAATAACAATAATAACAATAATAATAATAATAATAATAATAATG AATTAATATCTAGTGGTCAAAATAATTCAATTTTAACTCATAGACATCATATAAGCGCAG ATAATACTTTAGCTCAAAGTGAAATTACACCAACAACTCATTTAGATATTAATAATATTC ATTCAATGCAACCAACTCCAATGATTGGTGAAAATCAATTACCAATTAATACACCAAGCT CAGCCACTGGTGCCGATTCAATCAATAGTGGTTCAATTGCAACAAGTTCAAATCAAAACA ATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTGTAATCAATGGAAAGAACA GATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGANTA----------TCAAAA CAATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTGTAATCAATGGAAAGAA CAGATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGATTAAAGGTTTTATTAAG TGAATGTTCAAATTATGATCTTTTAATTGTACCATTTGAACCAACTAAACAAAATATCAA CTCTTTCCCATCTTTCCATGTACCAGGTATTGACATTATGAAGAAATCTTTATCAATGGT TCATTTACCAGGTTATAAAAAGAATCCTTCCACTAACTCTCCATTACCTGAAAGAGATAT TGAGCATCTTGAAGAGTTTGATGATCATCCACATATTAAAAATGGTAGTACAAATAATCT ATCTGCTTCTGCCCATCGTGGTGGTTCGTTCAGTAAATCTGGTAACCATGGTAGCTCTGG TAATCTTAACAATAGTGGTAGTGCTAATCCATTGGGTAAAGCTGGCGAAATCACTGATGG TCATGTAGAAGTTGAAATGGATAATCTTCGTTCTAGTGATGATTCTGATCAGAATCTTGA TGATGAACCTTATTGGTCAAAATGTCCAATCTCTTCTTTGGTAATTCACCATAAAGATAC TATCCCACAGGTTATTAGCGAATTAAATAATAAGAAGAATGCTGAAGAAAATGATACCAA TAAAAATAGTAATAATAGTAATAATGATAATAACAATGATATTAACAATAATAATATCAT TTTACCAGACGATACTCCATACGAAGTNATCCATCNATCTTAAAATAGTCAAACGAT
Length of connected seq.	1307
Full length Seq ID	CFC218E
Full length Seq.	>CFC218E.Seq GAAATAATACAAAAATAACAATCATTGTTTTCGATAATGAATTATATTGGGAACAACAAA AGAAACTTAAATCATCTACTCAAGATTCAAAATTATTAATTCATAGTCAACCAATTGCTG ATAGTGATATTAATAATAATAACAATAATAACAATAATAATAATAATAATAATAATAATG AATTAATATCTAGTGGTCAAAATAATTCAATTTTAACTCATAGACATCATATAAGCGCAG ATAATACTTTAGCTCAAAGTGAAATTACACCAACAACTCATTTAGATATTAATAATATTC ATTCAATGCAACCAACTCCAATGATTGGTGAAAATCAATTACCAATTAATACACCAAGCT CAGCCACTGGTGCCGATTCAATCAATAGTGGTTCAATTGCAACAAGTTCAAATCAAAACA ATGTTGTTGGATTTAAAAAGTTTGAAACTCATTTAGAGTCTGTAATCAATGGAAAGAACA GATCATCAATTAATGTAATCTATAAACCACAACGTTCAAGATTAAAGGTTTTATTAAGTG AATGTTCAAATTATGATCTTTTAATTGTACCATTTGAACCAACTAAACAAAATATCAACT CTTTCCCATCTTTCCATGTACCAGGTATTGACATTATGAAGAAATCTTTATCAATGGTTC ATTTACCAGGTTATAAAAAGAATCCTTCCACTAACTCTCCATTACCTGAAAGAGATATTG AGCATCTTGAAGAGTTTGATGATCATCCACATATTAAAAATGGTAGTACAAATAATCTAT CTGCTTCTGCCCATCGTGGTGGTTCGTTCAGTAAATCTGGTAACCATGGTAGCTCTGGTA ATCTTAACAATAGTGGTAGTGCTAATCCATTGGGTAAAGCTGGCGAAATCACTGATGGTC ATGTAGAAGTTGAAATGGATAATCTTCGTTCTAGTGATGATTCTGATCAGAATCTTGATG ATGAACCTTATTGGTCAAAATGTCCAATCTCTTCTTTGGTAATTCACCATAAAGATACTA TCCCACAGGTTATTAGCGAATTAAATAATAAGAAGAATGCTGAAGAAAATGATACCAATA AAAATAGTAATAATAGTAATAATGATAATAACAATGATATTAACAATAATAATATCATTT TACCAGACGATACTCCATACGAAGTNATCCATCNATCTTAAAATAGTCAAACGAT
Length of full length seq.	1195

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas