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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC211
Library CF
(Link to library)
Clone ID CFC211
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID CFC211P
(Link to Original site)
Representative DNA sequence 
>CFC211 (CFC211Q) /CSM/CF/CFC2-A/CFC211Q.Seq.d/
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
XXXXXXXXXXANATTAAAAGNTGNTAGCAAATNTTGTAAAGACCNTCNCCGGTAAGACTA
TTACACTCGAAGTTGAAGGTAGTGNCAACATTGAGAATGTAAAACCAANATTCAAGATAA
AGAAGGGTATNCCACCAGATCANCAACGTNTCATTTTCGCTGGTAAACAATTANAAGATG
GTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGAT
TAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAG
TTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCC
CACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCT
CTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTA
TGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTG
ATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAAC
AACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACA
TTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTG
TAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGA
ATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ihfyytnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---XLKXXSKXCKDXXR*dyytrs*r*xqh*ecktxiqdkegyxtrsxtxhfrw*tixrw
sysl*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryp
trptkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf*
*h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfc
knshw*nhytrs*r**qh*ecknknsrqrryp
Translated Amino Acid sequence (All Frames) 
Frame A:
kfifiiqilnsyfiflyivtfhkkkkkkknlkxxlf*kkk---

---XLKXXSKXCKDXXR*dyytrs*r*xqh*ecktxiqdkegyxtrsxtxhfrw*tixrw
sysl*lqypkrinsplgpqikrwyanlcqninw*dhhs*s*glr*y*kc*nkdsrqrryp
trptkinfrw*tirrwsysl*lqhskgihspfspqikrwyanfcqnphw*dyytrs*rf*
*h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihspfssqikrwyanfc
knshw*nhytrs*r**qh*ecknknsrqrryp

Frame B:
nsfllyky*ihilffyil*hfikkkkkkki*kxxffekk---

---x*kxxanxvktxxgktitlevegsxnienvkpxfkikkgxppdxqrxifagkqlxdg
rtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsdnienvktkiqdkegip
pdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifvktltgktitlevegsd
nienvkakiqdkegippdqqrlifagkqledgrtlsdyniqkestlhlvlrlrggmqifv
ktltgktitlevegsdnienvktkiqdkegip

Frame C:
ihfyytnikfifyffiycnis*KKKKKKKFKXSPFLKKK---

---ikxx*qxl*rpspvrllhsklkvvxtlrm*nqxsr*rrvxhqixnvsfslvnnxkmv
vlslitiskknqlstwssd*evvckslskh*lvrpsllklraqiilkmlkqrfktkkvsh
qtnkd*fslvnn*kmvvlslittfkrnplsi*ssd*evvckflskpslvrllhsklkvli
tlrmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fsd*evvckfl*
klslvkplhsklkvvttlrm*kqkfktkkvs
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC211 (CFC211Q) /CSM/CF/CFC2-A/CFC211Q.Seq.d/                       1532   0.0
CFK168 (CFK168Q) /CSM/CF/CFK1-C/CFK168Q.Seq.d/                       1463   0.0
CFC756 (CFC756Q) /CSM/CF/CFC7-C/CFC756Q.Seq.d/                       1447   0.0
SFG820 (SFG820Q) /CSM/SF/SFG8-A/SFG820Q.Seq.d/                       1441   0.0
CFA741 (CFA741Q) /CSM/CF/CFA7-B/CFA741Q.Seq.d/                       1441   0.0
SFD191 (SFD191Q) /CSM/SF/SFD1-D/SFD191Q.Seq.d/                       1439   0.0
CFC580 (CFC580Q) /CSM/CF/CFC5-D/CFC580Q.Seq.d/                       1437   0.0
CFJ655 (CFJ655Q) /CSM/CF/CFJ6-C/CFJ655Q.Seq.d/                       1431   0.0
CFI842 (CFI842Q) /CSM/CF/CFI8-B/CFI842Q.Seq.d/                       1431   0.0
CFK312 (CFK312Q) /CSM/CF/CFK3-A/CFK312Q.Seq.d/                       1429   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.  1342   0.0    3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.  1326   0.0    3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.  1326   0.0    3
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   783   0.0    3
M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.   672   0.0    4
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   662   0.0    3
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   662   0.0    3
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   656   0.0    3
Z54197|Z54197.1 C.albicans UBI4 gene encoding polyubiquitin.      170   e-102  4
BJ528884|BJ528884.1 Oryzias latipes cDNA clone:MF01SSB034A18, 5' end single read.   192   e-101  5
dna update 2004. 4. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   466   e-130
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   466   e-130
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   466   e-130
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   462   e-129
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   446   e-124
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   443   e-123
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   443   e-123
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   443   e-123
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   443   e-123
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   443   e-123
protein update 2009. 5.12
PSORT 

 psg: 0.55  gvh: 0.23  alm: 0.72  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.82  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for CFC211 is nuc
5' end seq. ID CFC211F
5' end seq. 
>CFC211F.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
----------
Length of 5' end seq. 120
3' end seq. ID CFC211Z
3' end seq. 
>CFC211Z.Seq
----------ANATTAAAAGNTGNTAGCAAATNTTGTAAAGACCNTCNCCGGTAAGACTA
TTACACTCGAAGTTGAAGGTAGTGNCAACATTGAGAATGTAAAACCAANATTCAAGATAA
AGAAGGGTATNCCACCAGATCANCAACGTNTCATTTTCGCTGGTAAACAATTANAAGATG
GTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGAT
TAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAG
TTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCC
CACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCT
CTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTA
TGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTG
ATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAAC
AACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACA
TTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTG
TAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGA
ATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCA
Length of 3' end seq. 808
Connected seq. ID CFC211P
Connected seq. 
>CFC211P.Seq
AAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAACA
TTTCATAAAAAAAAAAAAAAAAAAAAAAATTTAAAAANTCNCCTTTTTTGAAAAAAAAAA
----------ANATTAAAAGNTGNTAGCAAATNTTGTAAAGACCNTCNCCGGTAAGACTA
TTACACTCGAAGTTGAAGGTAGTGNCAACATTGAGAATGTAAAACCAANATTCAAGATAA
AGAAGGGTATNCCACCAGATCANCAACGTNTCATTTTCGCTGGTAAACAATTANAAGATG
GTCGTACTCTCTCTGATTACAATATCCAAAAAGAATCAACTCTCCACTTGGTCCTCAGAT
TAAGAGGTGGTATGCAAATCTTTGTCAAAACATTAACTGGTAAGACCATCACTCTTGAAG
TTGAGGGCTCAGATAATATTGAAAATGTTAAAACAAAGATTCAAGACAAAGAAGGTATCC
CACCAGACCAACAAAGATTAATTTTCGCTGGTAAACAATTAGAAGATGGTCGTACTCTCT
CTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTCCTCAGATTAAGAGGTGGTA
TGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTATTACACTCGAAGTTGAAGGTTCTG
ATAACATTGAGAATGTTAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCAGATCAAC
AACGTCTCATTTTCGCCGGTAAACAATTGGAGGATGGTCGTACTCTCTCTGATTACAACA
TTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGATTAAGAGGTGGTATGCAAATTTTTG
TAAAAACTCTCACTGGTAAAACCATTACACTCGAAGTTGAAGGTAGTGACAACATTGAGA
ATGTAAAAACAAAAATTCAAGACAAAGAAGGTATCCCA
Length of connected seq. 928
Full length Seq ID -
Full length Seq. -
Length of full length seq. -