>CFC190 (CFC190Q) /CSM/CF/CFC1-D/CFC190Q.Seq.d/
ATTTTATTTTTATTTTTTCCAAAACCCCTTAACAAATAATAATTAAATAAAAAATGGCAA
AAGTAGGAGAAGGTGACCCAAGATGGATTGTTGAAAATAGAGAGGATGGACATAATGTTA
ATGGTTGGCATTGGTCAGAGAAAGATTGTTTACCATGGAGTAAGAATACAATTGGTGGAT
TATTCGATAAAAAGGTTATTCAAGAAACAGATGAATATACATTCAAAATCTCATCAACTC
CAGTTGTTTCAGGTGAATGTACAGCAAATAATCGTAAAGGTAAAACCATCTTTTTATATG
AACTAGATGTTAAAATGAATTGGGAAGTCGTTTTCAAACCTAAAAAGGTTTTACCACCAC
CACCAACCACTAAATCTAAAGGCGCTGCAGATGATATTGACGAGGAGGATGACGACGGTA
AACCAGCAGAACCAATAATAACTCAAAAGAAAACCATCTCTGGTGAATTCACAGTACCAT
ATATTTCCGACGAGAATGGTGACGAAGCCCCAACTGTAAGATACACTATCAATACCACTG
CCGATAATGATGAAACTAAACAATCCATAAACATGGTTCAATCTTTACTTAAGTCACACG
GTGTACCATTTGTACAATCACAATGTCAAGAATTTATTXXXXXXXXXX

fififsktp*qiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNTIGGL
FDKKVIQETDEYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKVLPPP
PTTKSKGAADDIDEEDDDGKPAEPIITQKKTISGEFTVPYISDENGDEAPTVRYTINTTA
DNDETKQSINMVQSLLKSHGVPFVQSQCQEF---

Frame A:
ilflffpkplnk**lnkkwqk*ekvtqdgllkiermdimlmvgigqrkivyhgvriqlvd
ysikrlfkkqmnihskshqlqlfqvnvqqiivkvkpsfymn*mlk*igksfsnlkrfyhh
hqplnlkalqmiltrrmttvnqqnq**lkrkpslvnsqyhifptrmvtkpql*dtlsipl
pimmklnnp*twfnlylshtvyhlynhnvknl---


Frame B:
fyfyffqnpltnnn*ikngksrrr*pkmdc*k*rgwt*c*wlalvrerlftme*eynwwi
ir*kgysrnr*iyiqnlinsscfr*mysk*s*r*nhlfi*trc*nelgsrfqt*kgfttt
tnh*i*rrcr*y*rgg*rr*tsrtnnnskenhlw*ihstiyfrrew*rspnckihyqyhc
r***n*tihkhgsift*vtrctictitmsriy---


Frame C:
fififsktp*qiiik*KMAKVGEGDPRWIVENREDGHNVNGWHWSEKDCLPWSKNTIGGL
FDKKVIQETDEYTFKISSTPVVSGECTANNRKGKTIFLYELDVKMNWEVVFKPKKVLPPP
PTTKSKGAADDIDEEDDDGKPAEPIITQKKTISGEFTVPYISDENGDEAPTVRYTINTTA
DNDETKQSINMVQSLLKSHGVPFVQSQCQEF---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC190 (CFC190Q) /CSM/CF/CFC1-D/CFC190Q.Seq.d/                       1229   0.0
SFG650 (SFG650Q) /CSM/SF/SFG6-C/SFG650Q.Seq.d/                       1221   0.0
CFB194 (CFB194Q) /CSM/CF/CFB1-D/CFB194Q.Seq.d/                       1209   0.0
CFI170 (CFI170Q) /CSM/CF/CFI1-C/CFI170Q.Seq.d/                       1207   0.0
SFA671 (SFA671Q) /CSM/SF/SFA6-C/SFA671Q.Seq.d/                       1205   0.0
CFJ169 (CFJ169Q) /CSM/CF/CFJ1-C/CFJ169Q.Seq.d/                       1203   0.0
CFC223 (CFC223Q) /CSM/CF/CFC2-A/CFC223Q.Seq.d/                       1199   0.0
CFB195 (CFB195Q) /CSM/CF/CFB1-D/CFB195Q.Seq.d/                       1176   0.0
CHA502 (CHA502Q) /CSM/CH/CHA5-A/CHA502Q.Seq.d/                       1138   0.0
CFI695 (CFI695Q) /CSM/CF/CFI6-D/CFI695Q.Seq.d/                       1070   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    32   1e-04  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    32   0.001  15
AC007767|AC007767.3 Arabidopsis thaliana chromosome 1 BAC F5D14 sequence, complete sequence.    36   0.003  6
Z99297|Z99297.1 Human DNA sequence from clone RP1-262D12 on chromosome 1q23.3-24.3.    40   0.007  4
BX950206|BX950206.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    34   0.031  6
AP004830|AP004830.1 Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2, section 9/10.    36   0.032  8
BX548834|BX548834.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse104d03_q1c.    50   0.040  1
AC004127|AC004127.2 Homo sapiens chromosome 11 clone pDJ741n15, *** SEQUENCING IN PROGRESS ***, 7 unordered pieces.    50   0.040  1
AC074200|AC074200.2 Homo sapiens chromosome 11 clone RP11-703H8, WORKING DRAFT SEQUENCE, 9 unordered pieces.    50   0.040  1
AP003306|AP003306.2 Homo sapiens genomic DNA, chromosome 11q clone:RP11-703H8, complete sequences.    50   0.040  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DB6) RecName: Full=Activator of 90 kDa heat shock protein AT...   350   3e-95
AB158647_1(AB158647|pid:none) Bombyx mori Bm44, Bm44 mRNA for Bm...   111   2e-23
EU973346_1(EU973346|pid:none) Zea mays clone 397151 activator of...   103   3e-21
BT038805_1(BT038805|pid:none) Zea mays full-length cDNA clone ZM...   103   4e-21
AE014134_3649(AE014134|pid:none) Drosophila melanogaster chromos...   103   5e-21
FN315349_1(FN315349|pid:none) Schistosoma japonicum isolate Anhu...   102   7e-21
EF084940_1(EF084940|pid:none) Picea sitchensis clone WS02714_H18...   102   7e-21
AY815067_1(AY815067|pid:none) Schistosoma japonicum SJCHGC01423 ...   102   7e-21
BC081343_1(BC081343|pid:none) Xenopus tropicalis MGC89589 protei...   100   4e-20
AY120721_1(AY120721|pid:none) Arabidopsis thaliana unknown prote...   100   5e-20

 psg: 0.39  gvh: 0.20  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.13  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for CFC190 is nuc

>CFC190F.Seq
ATTTTATTTTTATTTTTTCCAAAACCCCTTAACAAATAATAATTAAATAAAAAATGGCAA
AAGTAGGAGAAGGTGACCCAAGATGGATTGTTGAAAATAGAGAGGATGGACATAATGTTA
ATGGTTGGCATTGGTCAGAGAAAGATTGTTTACCATGGAGTAAGAATACAATTGGTGGAT
TATTCGATAAAAAGGTTATTCAAGAAACAGATGAATATACATTCAAAATCTCATCAACTC
CAGTTGTTTCAGGTGAATGTACAGCAAATAATCGTAAAGGTAAAACCATCTTTTTATATG
AACTAGATGTTAAAATGAATTGGGAAGTCGTTTTCAAACCTAAAAAGGTTTTACCACCAC
CACCAACCACTAAATCTAAAGGCGCTGCAGATGATATTGACGAGGAGGATGACGACGGTA
AACCAGCAGAACCAATAATAACTCAAAAGAAAACCATCTCTGGTGAATTCACAGTACCAT
ATATTTCCGACGAGAATGGTGACGAAGCCCCAACTGTAAGATACACTATCAATACCACTG
CCGATAATGATGAAACTAAACAATCCATAAACATGGTTCAATCTTTACTTAAGTCACACG
GTGTACCATTTGTACAATCACAATGTCAAGAATTTATT----------