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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC182
Library CF
(Link to library)
Clone ID CFC182
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC182P
(Link to Original site)
Representative DNA sequence 
>CFC182 (CFC182Q) /CSM/CF/CFC1-D/CFC182Q.Seq.d/
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTXX
XXXXXXXXTAAGAGCACGTTTAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACACC
ATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAGGA
AACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCACG
TGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGTTC
AAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCTGT
GCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAACAACAAGTTAGAGATACAAT
CAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAATGA
TACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCATTT
GAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCTGA
TACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGAGC
TAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCCATCCATATCATGTTGATTT
ACATGTCTCCTCTCCTTCTNAATTATCCTCNAAATCGTTACTAAAACTATCACTCAAAAT
TCGGAACTCTCAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iliyshnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLV
GSGSGGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTI
GGVKDFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTN
SFRKSTYGSVSSPSSSNKD---

---RARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQSR
GSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDTI
KDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLSD
TIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSXLSSKSLLKLSLKI
RNSQ
Translated Amino Acid sequence (All Frames) 
Frame A:
iliyshnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLV
GSGSGGVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTI
GGVKDFLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTN
SFRKSTYGSVSSPSSSNKD---

---*ehv*vlildl*is*lhhimlilnvqlnqkfqkrl*rkplqkhqvkhqwy*vmmlnh
vvvvvv*pqvtvhqvlqlkvqtqpvkhllvlvvnlqhhqlcqnqvvqhlvsmmnnkleiq
skmldpivltligv*lvikmipl*lsllkemvvlmnwsai*iqrsllma*fvklkdsisl
ipsnllssislvkisivclelnlvlilvllnnysihimliymsplllnypxnry*nyhsk
fgtlk

Frame B:
f*yihttlqkdnny**ewfynlstihhvnqqlqi*emiqpqligyyyhlnhqnqkrln*l
evvqvv*qn*lniykmiwldlhwlerliksmivkplnlhssislekklesfkkvkslspl
vvlkiswvhsnvis*spqrmkslmksy*ikfkislvqvqkf*mkmvqklvlqnqplhqpt
lsenqhtvqflhhhpqikt---

---kstfrysywicksvsytisc*y*mys*irnfkrdcrgnrcksir*singie**csit
w*wwsydlklqfikcfnsrfkhnr*nicwcw**iyntiscakikwfntwfr**tts*ryn
qrc*ir*y*h*lvfswl*k*yhfnchc*rkwwc**igrpfefkdrclwlss*s*kirsl*
yhqicfhrfrw*ryqsyv*s*twysfwyc*tiipsisc*ftcllsfxiilxivtktitqn
selsr

Frame C:
fniftqhykktiiinkngfticrrfim*isncrfkk*fnln*lgiiii*itkirkd*isw
kwfrwcsris*tftr*fgwicig*kd**nr***nr*icihqfhwrkswnlskr*nlchhw
wc*rflgfipm*flnhlke*nl**nrik*nsrylwyrfksfr*kwcknwcfkinhftnql
fqkinirfsfftiilk*r---

---RARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQSR
GSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDTI
KDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLSD
TIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSXLSSKSLLKLSLKI
RNSQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC182 (CFC182Q) /CSM/CF/CFC1-D/CFC182Q.Seq.d/                       2575   0.0
VFI640 (VFI640Q) /CSM/VF/VFI6-B/VFI640Q.Seq.d/                       1429   0.0
CHB476 (CHB476Q) /CSM/CH/CHB4-D/CHB476Q.Seq.d/                       1429   0.0
CFC366 (CFC366Q) /CSM/CF/CFC3-C/CFC366Q.Seq.d/                       1429   0.0
CFC142 (CFC142Q) /CSM/CF/CFC1-B/CFC142Q.Seq.d/                       1429   0.0
SFE348 (SFE348Q) /CSM/SF/SFE3-B/SFE348Q.Seq.d/                       1427   0.0
VFH846 (VFH846Q) /CSM/VF/VFH8-B/VFH846Q.Seq.d/                       1415   0.0
SFF593 (SFF593Q) /CSM/SF/SFF5-D/SFF593Q.Seq.d/                       1415   0.0
CFC473 (CFC473Q) /CSM/CF/CFC4-D/CFC473Q.Seq.d/                       1413   0.0
VFL518 (VFL518Q) /CSM/VF/VFL5-A/VFL518Q.Seq.d/                       1409   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.  1346   0.0    5
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   0.003  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.007  21
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    46   0.007  13
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   0.011  18
AL353648|AL353648.27 Human DNA sequence from clone RP11-550P23 on chromosome 13.    50   0.084  1
AQ651762|AQ651762.1 Sheared DNA-20H15.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-20H15, DNA sequence.    50   0.084  1
CC067446|CC067446.1 CSU-K33r.11J23.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.11J23, DNA sequence.    50   0.084  1
AR300198|AR300198.1 Sequence 1 from patent US 6537773.             36   0.095  21
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.096  21
dna update 2004. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...   377   e-103
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52...    65   4e-09
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof...    64   1e-08
(A6H7G2) RecName: Full=Drebrin-like protein;  &BC146234_1(BC1462...    63   3e-08
(Q6GM14) RecName: Full=Drebrin-like protein B;  &BC074277_1(BC07...    62   3e-08
(Q7ZXQ9) RecName: Full=Drebrin-like protein A;  &BC044296_1(BC04...    62   5e-08
CR457167_1(CR457167|pid:none) Homo sapiens full open reading fra...    62   6e-08
AB170106_1(AB170106|pid:none) Macaca fascicularis brain cDNA clo...    62   6e-08
BC011677_1(BC011677|pid:none) Homo sapiens drebrin-like, mRNA (c...    62   6e-08
(Q9UJU6) RecName: Full=Drebrin-like protein; AltName: Full=Drebr...    62   6e-08
protein update 2009. 5.12
PSORT 

 psg: 0.66  gvh: 0.59  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFC182 is cyt
5' end seq. ID CFC182F
5' end seq. 
>CFC182F.Seq
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACT--
--------
Length of 5' end seq. 598
3' end seq. ID CFC182Z
3' end seq. 
>CFC182Z.Seq
----------TAAGAGCACGTTTAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACA
CCATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAG
GAAACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCA
CGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGT
TCAAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCT
GTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAACAACAAGTTAGAGATACA
ATCAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAAT
GATACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCAT
TTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCT
GATACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGA
GCTAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCCATCCATATCATGTTGAT
TTACATGTCTCCTCTCCTTCTNAATTATCCTCNAAATCGTTACTAAAACTATCACTCAAA
ATTCGGAACTCTCAAGA
Length of 3' end seq. 727
Connected seq. ID CFC182P
Connected seq. 
>CFC182P.Seq
ATTTTAATATATTCACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTA
CAATTTGTCGACGATTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACC
TCAACTGATTGGGTATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTT
GGAAGTGGTTCAGGTGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGA
TTTGCATTGGTTAGAAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTC
ATCAATTTCATTGGAGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATT
GGTGGTGTTAAAGATTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAAT
GAAATCTCTGATGAAATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAA
GTTTTAGATGAAAATGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAAC
TCTTTCAGAAAATCAACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACT--
--------TAAGAGCACGTTTAGGTACTCATACTGGATTTGTAAATCAGTTAGTTACACC
ATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTAGAGGA
AACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGAGTGATGATGCTCAATCACG
TGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAAGGTTC
AAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAATTTACAACACCATCAGCTGT
GCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAACAACAAGTTAGAGATACAAT
CAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTTTAGTTGGTTATAAAAATGA
TACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGCCATTT
GAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTCTCTGA
TACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATATCAATCGTATGTTTAGAGC
TAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCCATCCATATCATGTTGATTT
ACATGTCTCCTCTCCTTCTNAATTATCCTCNAAATCGTTACTAAAACTATCACTCAAAAT
TCGGAACTCTCAAGA
Length of connected seq. 1325
Full length Seq ID -
Full length Seq. -
Length of full length seq. -