>CFC180 (CFC180Q) /CSM/CF/CFC1-D/CFC180Q.Seq.d/
XXXXXXXXXXTGTACAAAAGATTCACCATCAATTTCAATGANANCCAAAGATAAATTTCA
AANTCTTTCAATTGTTGTTACTGATCCAAATATTGATCCAAAATCAATTTGGNCAAATTC
ACCACCGTAATTTGATCACAAAAAATAAATTAAAAGCAGTATTTTCTTTACCATCAAATG
AACANCAATCACCATCNAATCCATCAAGTAACAGCACAAATGATTATAAATCTAACAGTA
CATTATTTTCAGAAGTTAATAGTATTAATNNTAATAGTAATAGTAGCAATNCACAAAAAC
ATGATCATGAAANCNATAAAACCAGTAACATTAGCAATAGTAATATAGATACCACAACCN
CCNCCNCCACCTCCAATAGTAATACTAATAGTAATAGTGCATCTTCATTGACAGCAACTT
CAAATAGANCCGATTCTAAATCTTNGAAAACAGATATNACAAAAAGTGAATGTACAAAAT
ACAACGGCCGTCCTCCTCAATACAAGATACTGAAACTGAAAAACTNCGTAATCAACTTAA
AANTTTNNATGATGANCNCGNCNTNNNTAAAAAAGG

---vqkihhqfq*XPKINFKXFQLLLLIQILIQNQFGQIHHRNLITKNKLKAVFSLPSNE
XQSPSNPSSNSTNDYKSNSTLFSEVNSINXNSNSSNXQKHDHEXXKTSNISNSNIDTTTX
XXTSNSNTNSNSASSLTATSNRXDSKSXKTDXTKSECTKYNGRPPQYKILKLKNXVINLK
XXMMXXXXXKK

Frame A:
---vqkihhqfq*XPKINFKXFQLLLLIQILIQNQFGQIHHRNLITKNKLKAVFSLPSNE
XQSPSNPSSNSTNDYKSNSTLFSEVNSINXNSNSSNXQKHDHEXXKTSNISNSNIDTTTX
XXTSNSNTNSNSASSLTATSNRXDSKSXKTDXTKSECTKYNGRPPQYKILKLKNXVINLK
XXMMXXXXXKK


Frame B:
---ykrftinfnxxqr*isxsfnccy*sky*skinlxkfttvi*sqkin*kqyflyhqmn
xnhhxihqvtaqmiinltvhyfqklivlxxivivaxhknmimkxikpvtlaivi*ipqpp
ppppivilivivhlh*qqlqixpilnlxkqixqkvnvqnttavllntry*n*ktx*st*x
fx**xrxx*kr


Frame C:
---tkdspsismxxkdkfqxlsivvtdpnidpksiwxnspp*fdhkk*ikssifftik*t
xitixsik*qhk*l*i*qyiifrs**y*x*****qxtkt*s*xx*nq*h*q**yryhnxx
xhlq**y****cifidsnfk*xrf*ixenryxkk*mykiqrpsssiqdteteklrnqlkx
xxdxxxxxkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC180 (CFC180Q) /CSM/CF/CFC1-D/CFC180Q.Seq.d/                        955   0.0
SSK274 (SSK274Q) /CSM/SS/SSK2-D/SSK274Q.Seq.d/                        777   0.0
SSL504 (SSL504Q) /CSM/SS/SSL5-A/SSL504Q.Seq.d/                         42   0.009
SSK460 (SSK460Q) /CSM/SS/SSK4-C/SSK460Q.Seq.d/                         42   0.009
SSG388 (SSG388Q) /CSM/SS/SSG3-D/SSG388Q.Seq.d/                         42   0.009
SSE452 (SSE452Q) /CSM/SS/SSE4-C/SSE452Q.Seq.d/                         42   0.009
FC-AM08 (FC-AM08Q) /CSM/FC/FC-AM/FC-AM08Q.Seq.d/                       42   0.009
VSK464 (VSK464Q) /CSM/VS/VSK4-C/VSK464Q.Seq.d/                         40   0.036
VSI785 (VSI785Q) /CSM/VS/VSI7-D/VSI785Q.Seq.d/                         40   0.036
VSF750 (VSF750Q) /CSM/VS/VSF7-C/VSF750Q.Seq.d/                         40   0.036

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    40   4e-08  11
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence.    40   7e-07  8
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   8e-06  9
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    42   1e-05  10
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    40   5e-05  8
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   9e-05  9
AY387646|AY387646.1 Dictyostelium discoideum Phg1B (phg1b) gene, complete cds.    36   1e-04  3
AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.    42   1e-04  5
AC116919|AC116919.2 Dictyostelium discoideum chromosome 2 map complement(6245035-6206343) strain AX4, complete sequence.    40   1e-04  6
AC006281|AC006281.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   1e-04  9

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 435,476,962

 psg: 0.92  gvh: 0.53  alm: 0.38  top: 0.67  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 20.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for CFC180 is nuc

>CFC180Z.Seq
----------TGTACAAAAGATTCACCATCAATTTCAATGANANCCAAAGATAAATTTCA
AANTCTTTCAATTGTTGTTACTGATCCAAATATTGATCCAAAATCAATTTGGNCAAATTC
ACCACCGTAATTTGATCACAAAAAATAAATTAAAAGCAGTATTTTCTTTACCATCAAATG
AACANCAATCACCATCNAATCCATCAAGTAACAGCACAAATGATTATAAATCTAACAGTA
CATTATTTTCAGAAGTTAATAGTATTAATNNTAATAGTAATAGTAGCAATNCACAAAAAC
ATGATCATGAAANCNATAAAACCAGTAACATTAGCAATAGTAATATAGATACCACAACCN
CCNCCNCCACCTCCAATAGTAATACTAATAGTAATAGTGCATCTTCATTGACAGCAACTT
CAAATAGANCCGATTCTAAATCTTNGAAAACAGATATNACAAAAAGTGAATGTACAAAAT
ACAACGGCCGTCCTCCTCAATACAAGATACTGAAACTGAAAAACTNCGTAATCAACTTAA
AANTTTNNATGATGANCNCGNCNTNNNTAAAAAAGG