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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC155
Library CF
(Link to library)
Clone ID CFC155
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16295-1
Original site URL
Representative seq. ID CFC155P
(Link to Original site)
Representative DNA sequence 
>CFC155 (CFC155Q) /CSM/CF/CFC1-C/CFC155Q.Seq.d/
ATTTTCAATTTTTTCTTTTTAAAATGGAAAACAGACAAAATTATTTTTATTTAATTAAAT
TGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTATATT
TCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGACTTT
GATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATCTCAA
TTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGATGAA
ATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATATGCA
GAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACATTAT
TACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGATCAT
AATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTCTCCCACCAGATAATCCTCCA
ATGAATTTTTATGCATCGCATTCTGATGATCTTTTTAXXXXXXXXXXGATTAGTTTAGAT
TTTAAAAAAATTGGTTATCCACCAAGTCAAATGTTTGAGACTGAAATAATTAATTGCAAT
AGAAAATTTAGACCAGATTATCATTTATTAGAGTTTAAAACAGATTTTCCATTACAATGC
CACCACTTGGAAAATGGTACTTGCTATGAAGTTGAACCTCCCTCAAGATTAAGTTCTCCA
GTAACTACTATTGCATCAACTGCAACCACTATTGTATCAACAATTACCGAAATTCCAATT
GAGACAACAACAACAACAACAATAACAACTTCATCAACTGTAAGTGGAGGAAGTGGGTCA
ACAATTGGAGGATCGACAGTAACAACATCAGCTACTATCGGAGTTACTACCTCTATAAGT
GGAAGTGATAGTCCTATTATTTATGACCCATGTTCAATTTTCAAATGTGGACATGGTAAA
CGTTGTTATAATATTGATGATTCTCCAATTTGTATTAAAACTGATTGTTTATCATGTGAA
GATTTAGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAA
AATATTACATGTAGAGACTGTTGCCAATAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ifnffflkwktdkiifi*LNWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDF
DMDEVQDNTFSMDYLLAKSQFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYA
EEGSKTTTSGFKYFDFTKHYYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFLPPDNPP
MNFYASHSDDLF---

---ISLDFKKIGYPPSQMFETEIINCNRKFRPDYHLLEFKTDFPLQCHHLENGTCYEVEP
PSRLSSPVTTIASTATTIVSTITEIPIETTTTTTITTSSTVSGGSGSTIGGSTVTTSATI
GVTTSISGSDSPIIYDPCSIFKCGHGKRCYNIDDSPICIKTDCLSCEDLDCPSQGLKCIS
FKVNRHKNITCRDCCQY
Translated Amino Acid sequence (All Frames) 
Frame A:
ifnffflkwktdkiifi*LNWKTMAFLIHSFLCIFLISYISISVNGQILTWFDVNNNPDF
DMDEVQDNTFSMDYLLAKSQFTPDGLSMTYSYGNSPTYDEITEKILLVHNESTFNGWTYA
EEGSKTTTSGFKYFDFTKHYYNDKFFPVDSLGFGNNGLDHNYKWCARLHFVSFLPPDNPP
MNFYASHSDDLF---

---d*frf*knwlstksnv*d*nn*lq*ki*trlsfirv*nrfsitmpplgkwyll*s*t
slkikfssnyycincnhycinnyrnsn*dnnnnnnnnfinckwrkwvnnwridsnnisyy
rsyylykwk**syyl*pmfnfqmwtw*tll*y**fsnly*n*lfim*rfrlpfpriemyi
l*s*qa*kyym*rllpi

Frame B:
fsifsf*ngkqtklflfn*igrqwlf*fivfyvyf*flifpyqlmvky*hglm*ttiqtl
iwtkfkiihfqwiiy*lnlnshqmdfq*hihmeiaqhmmk*lkrfywsimnqllmvghmq
kkvqkqlhlvlnililqniitminsfqliv*vleimdwiiiingaqdyil*afshqiilq
*ifmhrilmifl---

---ISLDFKKIGYPPSQMFETEIINCNRKFRPDYHLLEFKTDFPLQCHHLENGTCYEVEP
PSRLSSPVTTIASTATTIVSTITEIPIETTTTTTITTSSTVSGGSGSTIGGSTVTTSATI
GVTTSISGSDSPIIYDPCSIFKCGHGKRCYNIDDSPICIKTDCLSCEDLDCPSQGLKCIS
FKVNRHKNITCRDCCQY

Frame C:
fqfflfkmenrqnyfylikledngffns*ffmyifdflyfhis*wsninmv*ckqqsrl*
ygrssr*yifnglfis*isihtrwtfndifiwk*pni**nn*kdfigp**inf*wldicr
rrfknnyiwf*if*fyktllq**ilss**frfwk*wigs*l*mvrkitfcklsptr*ssn
eflciaf**sf---

---lv*ilkklvihqvkclrlk*liaienldqiiiy*slkqifhynattwkmvlamklnl
pqd*vlq*lllhqlqpllyqqlpkfqlrqqqqqq*qlhql*veevgqqledrq*qhqlls
ellpl*vevivllfmthvqfsnvdmvnvviilmilqfvlklivyhvki*ialpkd*nvyp
lkltgikilhvetvan
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC155 (CFC155Q) /CSM/CF/CFC1-C/CFC155Q.Seq.d/                       1330   0.0
SLE256 (SLE256Q) /CSM/SL/SLE2-C/SLE256Q.Seq.d/                        896   0.0
SFK624 (SFK624Q) /CSM/SF/SFK6-A/SFK624Q.Seq.d/                        896   0.0
SFK572 (SFK572Q) /CSM/SF/SFK5-C/SFK572Q.Seq.d/                        896   0.0
SFK288 (SFK288Q) /CSM/SF/SFK2-D/SFK288Q.Seq.d/                        896   0.0
SFJ874 (SFJ874Q) /CSM/SF/SFJ8-D/SFJ874Q.Seq.d/                        896   0.0
SFI571 (SFI571Q) /CSM/SF/SFI5-C/SFI571Q.Seq.d/                        896   0.0
SFI558 (SFI558Q) /CSM/SF/SFI5-C/SFI558Q.Seq.d/                        896   0.0
SFI512 (SFI512Q) /CSM/SF/SFI5-A/SFI512Q.Seq.d/                        896   0.0
SFI122 (SFI122Q) /CSM/SF/SFI1-A/SFI122Q.Seq.d/                        896   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.   597   0.0    12
AC024694|AC024694.1 Mus musculus clone RP23-189B10, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    56   0.001  1
AC139562|AC139562.3 Mus musculus chromosome 5 clone RP24-180G11 map 5, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.    56   0.001  1
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    36   0.042  13
AE017288|AE017288.1 Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, section 2 of 14 of the complete sequence.    42   0.10   9
AC099783|AC099783.2 Homo sapiens chromosome 3 clone RP11-115I24, complete sequence.    38   0.15   8
AC112628|AC112628.5 Rattus norvegicus clone CH230-106K21, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    40   0.59   9
CR376750|CR376750.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    36   0.61   8
BX901896|BX901896.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-71L1.    44   0.75   5
AL611922|AL611922.7 Human DNA sequence from clone RP11-633N4 on chromosome 9.    36   0.77   6
dna update 2004. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor;                 48   6e-04
(Q54FD8) RecName: Full=Protein psiD; Flags: Precursor;                 46   0.002
(Q54CH8) RecName: Full=Protein psiN; Flags: Precursor;                 46   0.003
(P15269) RecName: Full=Spore coat protein SP70; AltName: Full=Pr...    44   0.011
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor;                 44   0.014
(Q1ZXC5) RecName: Full=Protein psiC; Flags: Precursor;                 42   0.053
(Q54C31) RecName: Full=Protein psiR; Flags: Precursor;                 42   0.053
AM746676_5746(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    40   0.15
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    39   0.26
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    39   0.26
protein update 2009. 5.12
PSORT 

 psg: 0.98  gvh: 0.59  alm: 0.25  top: -0.03  tms: 0.07  mit: 0.30  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.50  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: endoplasmic reticulum
	 20.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane

>> prediction for CFC155 is end
5' end seq. ID CFC155F
5' end seq. 
>CFC155F.Seq
ATTTTCAATTTTTTCTTTTTAAAATGGAAAACAGACAAAATTATTTTTATTTAATTAAAT
TGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTATATT
TCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGACTTT
GATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATCTCAA
TTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGATGAA
ATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATATGCA
GAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACATTAT
TACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGATCAT
AATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTCTCCCACCAGATAATCCTCCA
ATGAATTTTTATGCATCGCATTCTGATGATCTTTTTA----------
Length of 5' end seq. 577
3' end seq. ID CFC155Z
3' end seq. 
>CFC155Z.Seq
----------GATTAGTTTAGATTTTAAAAAAATTGGTTATCCACCAAGTCAAATGTTTG
AGACTGAAATAATTAATTGCAATAGAAAATTTAGACCAGATTATCATTTATTAGAGTTTA
AAACAGATTTTCCATTACAATGCCACCACTTGGAAAATGGTACTTGCTATGAAGTTGAAC
CTCCCTCAAGATTAAGTTCTCCAGTAACTACTATTGCATCAACTGCAACCACTATTGTAT
CAACAATTACCGAAATTCCAATTGAGACAACAACAACAACAACAATAACAACTTCATCAA
CTGTAAGTGGAGGAAGTGGGTCAACAATTGGAGGATCGACAGTAACAACATCAGCTACTA
TCGGAGTTACTACCTCTATAAGTGGAAGTGATAGTCCTATTATTTATGACCCATGTTCAA
TTTTCAAATGTGGACATGGTAAACGTTGTTATAATATTGATGATTCTCCAATTTGTATTA
AAACTGATTGTTTATCATGTGAAGATTTAGATTGCCCTTCCCAAGGATTGAAATGTATAT
CCTTTAAAGTTAACAGGCATAAAAATATTACATGTAGAGACTGTTGCCAATAT
Length of 3' end seq. 583
Connected seq. ID CFC155P
Connected seq. 
>CFC155P.Seq
ATTTTCAATTTTTTCTTTTTAAAATGGAAAACAGACAAAATTATTTTTATTTAATTAAAT
TGGAAGACAATGGCTTTTTTAATTCATAGTTTTTTATGTATATTTTTGATTTCTTATATT
TCCATATCAGTTAATGGTCAAATATTAACATGGTTTGATGTAAACAACAATCCAGACTTT
GATATGGACGAAGTTCAAGATAATACATTTTCAATGGATTATTTATTAGCTAAATCTCAA
TTCACACCAGATGGACTTTCAATGACATATTCATATGGAAATAGCCCAACATATGATGAA
ATAACTGAAAAGATTTTATTGGTCCATAATGAATCAACTTTTAATGGTTGGACATATGCA
GAAGAAGGTTCAAAAACAACTACATCTGGTTTTAAATATTTTGATTTTACAAAACATTAT
TACAATGATAAATTCTTTCCAGTTGATAGTTTAGGTTTTGGAAATAATGGATTGGATCAT
AATTATAAATGGTGCGCAAGATTACATTTTGTAAGCTTTCTCCCACCAGATAATCCTCCA
ATGAATTTTTATGCATCGCATTCTGATGATCTTTTTA----------GATTAGTTTAGAT
TTTAAAAAAATTGGTTATCCACCAAGTCAAATGTTTGAGACTGAAATAATTAATTGCAAT
AGAAAATTTAGACCAGATTATCATTTATTAGAGTTTAAAACAGATTTTCCATTACAATGC
CACCACTTGGAAAATGGTACTTGCTATGAAGTTGAACCTCCCTCAAGATTAAGTTCTCCA
GTAACTACTATTGCATCAACTGCAACCACTATTGTATCAACAATTACCGAAATTCCAATT
GAGACAACAACAACAACAACAATAACAACTTCATCAACTGTAAGTGGAGGAAGTGGGTCA
ACAATTGGAGGATCGACAGTAACAACATCAGCTACTATCGGAGTTACTACCTCTATAAGT
GGAAGTGATAGTCCTATTATTTATGACCCATGTTCAATTTTCAAATGTGGACATGGTAAA
CGTTGTTATAATATTGATGATTCTCCAATTTGTATTAAAACTGATTGTTTATCATGTGAA
GATTTAGATTGCCCTTCCCAAGGATTGAAATGTATATCCTTTAAAGTTAACAGGCATAAA
AATATTACATGTAGAGACTGTTGCCAATAT
Length of connected seq. 1160
Full length Seq ID -
Full length Seq. -
Length of full length seq. -