CFC152
Library CF
(Link to library)
Clone ID CFC152
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15738-1
Original site URL
Representative seq. ID CFC152P
(Link to Original site)
Representative DNA sequence
>CFC152 (CFC152Q) /CSM/CF/CFC1-C/CFC152Q.Seq.d/
AGATAAAAAACATTTGACACCCCAAAGGTTAAGAAGATTTGTTGAACATTCCAAGCCAAT
TTCATTGAATAAGAAAGTCTGGAAAATTACAGAAATTGAAAATATATTTTCCGCCCAAAT
TGAATTAACATTTGGAATTAGACAAAGAAATATCGTTGAGTTGGAAGATTTCGTGTGGAG
AGTTAGTGATCCAAATAATTCATTGTATGGAAGTTATAAAACTTTTGAAGAGATTAAAGA
ATGGGTTAAACCATTGGATGAATCAATTGATGCTGTAAAGAATTGGTTAATTGAAAATGA
TATAAATGAATTCACAGTGACAAAAAGCGGCGATTTCATTCGTACCATTGTTTCTATTGA
TAAAGCAGAAGAATTACTATCGGTTAGATATAATAAAATGGTACATAAATTATCCAAACA
ATCATTCTTTCGTTCTCTTGATCCTTACACTATTCCAAGAGAACTTTATGATCATATTGA
TTTCATTGGTXXXXXXXXXXGATTGGCATATACTGATCGTGTAGATACTGAATTTAAGAA
ATACGCAGCAATGGGTAGAACAATAGTATTCTCAAGTGGTGATTTTGGTGTTGGTTGTAA
TGATGATTGTGATTCATTTTCACCAGGTTGGCCAGCATCTTCCCGTTTTGTATTGGCAGT
TGGGGGGGTAATTAAAAAGAAGGATGGCAGTATCATTGGTGATGAAATATCTGGTGGTGG
TTTTAGTAACTATTTCTCCCGTCCATGGTATCAAGTGGATGAATGTTCTTCCTATATCGA
GTGGTTAAACGGTTCTCTCTCTAGTTTCTACAATCAATCTGGAAGAGGTTTCCCTGATAT
CTCATCTTTCTCAGAAAATGTCGTTATACTCTACAAAGACAAATTGATGCCAATTGGAGG
TACTTCTGCATCAGCTCCAATTATTGCCGGCTTATTATCATTAATTAACGACCAAAGATT
ACAAAAAAATCAAAGTCCAATTGGTCTTTTCAATCCATTACTTTATAAAATTGCAAGAGA
TCATCCAAACTCTTTCCTTGATATTGACTTTGGTGAAAATAATTATAAATGTTGTACCAA
TGGTTTTAAATCTAAAAGTGGTTGGGATCCAGTAACGGTTTAGGTTTACCAAATTTNNAN
AATGGTTAAATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
DKKHLTPQRLRRFVEHSKPISLNKKVWKITEIENIFSAQIELTFGIRQRNIVELEDFVWR
VSDPNNSLYGSYKTFEEIKEWVKPLDESIDAVKNWLIENDINEFTVTKSGDFIRTIVSID
KAEELLSVRYNKMVHKLSKQSFFRSLDPYTIPRELYDHIDFIG---

---LAYTDRVDTEFKKYAAMGRTIVFSSGDFGVGCNDDCDSFSPGWPASSRFVLAVGGVI
KKKDGSIIGDEISGGGFSNYFSRPWYQVDECSSYIEWLNGSLSSFYNQSGRGFPDISSFS
ENVVILYKDKLMPIGGTSASAPIIAGLLSLINDQRLQKNQSPIGLFNPLLYKIARDHPNS
FLDIDFGENNYKCCTNGFKSKSGWDPVTV*vyqixxmvk


Translated Amino Acid sequence (All Frames)
Frame A:
r*ktfdtpkvkkic*tfqanfie*eslenyrn*kyifrpn*iniwn*tkkyr*vgrfrve
s**sk*fivwkl*nf*rd*rmg*tig*in*cckelvn*k*yk*ihsdkkrrfhsyhcfy*
*srritig*i**ngt*iiqtiilsfs*slhyskrtl*sy*fhw---

---dwhiliv*ilnlrntqqwveq*ysqvvilvlvvmmivihfhqvgqhlpvlywqlgg*
lkrrmavslvmkylvvvlvtispvhgikwmnvlpissg*tvlslvstinleevslishls
qkmslystktn*cqlevllhqlqllpayyh*lttkdykkikvqlvfsihyfiklqeiiqt
lsliltlvkiiinvvpmvlnlkvvgiq*rfrftkfxxwln

Frame B:
DKKHLTPQRLRRFVEHSKPISLNKKVWKITEIENIFSAQIELTFGIRQRNIVELEDFVWR
VSDPNNSLYGSYKTFEEIKEWVKPLDESIDAVKNWLIENDINEFTVTKSGDFIRTIVSID
KAEELLSVRYNKMVHKLSKQSFFRSLDPYTIPRELYDHIDFIG---

---igiy*scry*i*eirsng*nnsilkw*fwcwl***l*fiftrlasifpfcigswggn
*kegwqyhw**niwwwf**lflpsmvssg*mfflyrvvkrfsl*flqsiwkrfp*ylifl
rkcrytlqrqidanwryfcissnycrliiin*rpkitkksksnwsfqsitl*nckrsskl
fp*y*lw*k*l*mlyqwf*i*kwlgssnglglpnxxng*i

Frame C:
ikni*hpkg*edllnipsqfh*irksgklqklkiyfppkln*hleldkeislswkiscge
lviqiihcmevikllkrlknglnhwmnqlml*rig*lkmi*mnsq*qkaaisfvplflli
kqknyyrldiikwyinypnnhsfvlliltlfqenfmiilisl---

---LAYTDRVDTEFKKYAAMGRTIVFSSGDFGVGCNDDCDSFSPGWPASSRFVLAVGGVI
KKKDGSIIGDEISGGGFSNYFSRPWYQVDECSSYIEWLNGSLSSFYNQSGRGFPDISSFS
ENVVILYKDKLMPIGGTSASAPIIAGLLSLINDQRLQKNQSPIGLFNPLLYKIARDHPNS
FLDIDFGENNYKCCTNGFKSKSGWDPVTV*vyqixxmvk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

CFC152 (CFC152Q) /CSM/CF/CFC1-C/CFC152Q.Seq.d/ 2123 0.0
SFH720 (SFH720Q) /CSM/SF/SFH7-A/SFH720Q.Seq.d/ 1178 0.0
CFC388 (CFC388Q) /CSM/CF/CFC3-D/CFC388Q.Seq.d/ 1178 0.0
AFE286 (AFE286Q) /CSM/AF/AFE2-D/AFE286Q.Seq.d/ 1178 0.0
SFL146 (SFL146Q) /CSM/SF/SFL1-B/SFL146Q.Seq.d/ 1086 0.0
SFL356 (SFL356Q) /CSM/SF/SFL3-C/SFL356Q.Seq.d/ 1037 0.0
AFA556 (AFA556Q) /CSM/AF/AFA5-C/AFA556Q.Seq.d/ 1033 0.0
SSM365 (SSM365Q) /CSM/SS/SSM3-C/SSM365Q.Seq.d/ 1019 0.0
CHB633 (CHB633Q) /CSM/CH/CHB6-B/CHB633Q.Seq.d/ 1007 0.0
SSD460 (SSD460Q) /CSM/SS/SSD4-C/SSD460Q.Seq.d/ 948 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BZ663121|BZ663121.1 SALK_026616.41.80.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_026616.41.80.x, genomic survey sequence. 44 5e-04 2
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 32 5e-04 27
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 30 0.055 17
AP000794|AP000794.2 Homo sapiens genomic DNA, chromosome 11q23 clone:RP11-814N6, WORKING DRAFT SEQUENCE, 24 unordered pieces. 38 0.059 10
AC091950|AC091950.1 Homo sapiens chromosome 5 clone RP11-404K21, WORKING DRAFT SEQUENCE, 10 unordered pieces. 42 0.072 5
AC093729|AC093729.2 Homo sapiens BAC clone RP11-11N6 from 4, complete sequence. 50 0.072 1
AP001948|AP001948.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2243F22, WORKING DRAFT SEQUENCE, unordered pieces. 50 0.072 1
AC026971|AC026971.2 Homo sapiens chromosome 18 clone RP11-591I15 map 18, WORKING DRAFT SEQUENCE, 12 unordered pieces. 36 0.090 8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.12 15
AE017272|AE017272.1 Bacillus cereus ATCC 10987, section 9 of 18 of the complete genome. 36 0.13 11
dna update 2004. 4. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55CT0) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 397 e-109
BC068900_1(BC068900|pid:none) Xenopus laevis hypothetical protei... 135 2e-30
DQ242648_1(DQ242648|pid:none) Phanerochaete chrysosporium family... 134 6e-30
BC135587_1(BC135587|pid:none) Xenopus tropicalis hypothetical pr... 130 8e-29
AJ011912_1(AJ011912|pid:none) Mus musculus mRNA for putative tri... 126 1e-27
(O89023) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 126 1e-27
AK083832_1(AK083832|pid:none) Mus musculus 12 days embryo spinal... 126 1e-27
AK169924_1(AK169924|pid:none) Mus musculus NOD-derived CD11c +ve... 126 1e-27
(Q9EQV6) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 125 3e-27
(Q9XSB8) RecName: Full=Tripeptidyl-peptidase 1; Short=T... 122 3e-26
protein update 2009. 5.12
PSORT

psg: 0.49 gvh: 0.39 alm: 0.38 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.03
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: mitochondrial

>> prediction for CFC152 is nuc

5' end seq. ID CFC152F
5' end seq.
>CFC152F.Seq
AGATAAAAAACATTTGACACCCCAAAGGTTAAGAAGATTTGTTGAACATTCCAAGCCAAT
TTCATTGAATAAGAAAGTCTGGAAAATTACAGAAATTGAAAATATATTTTCCGCCCAAAT
TGAATTAACATTTGGAATTAGACAAAGAAATATCGTTGAGTTGGAAGATTTCGTGTGGAG
AGTTAGTGATCCAAATAATTCATTGTATGGAAGTTATAAAACTTTTGAAGAGATTAAAGA
ATGGGTTAAACCATTGGATGAATCAATTGATGCTGTAAAGAATTGGTTAATTGAAAATGA
TATAAATGAATTCACAGTGACAAAAAGCGGCGATTTCATTCGTACCATTGTTTCTATTGA
TAAAGCAGAAGAATTACTATCGGTTAGATATAATAAAATGGTACATAAATTATCCAAACA
ATCATTCTTTCGTTCTCTTGATCCTTACACTATTCCAAGAGAACTTTATGATCATATTGA
TTTCATTGGT----------
Length of 5' end seq. 490
3' end seq. ID CFC152Z
3' end seq.
>CFC152Z.Seq
----------GATTGGCATATACTGATCGTGTAGATACTGAATTTAAGAAATACGCAGCA
ATGGGTAGAACAATAGTATTCTCAAGTGGTGATTTTGGTGTTGGTTGTAATGATGATTGT
GATTCATTTTCACCAGGTTGGCCAGCATCTTCCCGTTTTGTATTGGCAGTTGGGGGGGTA
ATTAAAAAGAAGGATGGCAGTATCATTGGTGATGAAATATCTGGTGGTGGTTTTAGTAAC
TATTTCTCCCGTCCATGGTATCAAGTGGATGAATGTTCTTCCTATATCGAGTGGTTAAAC
GGTTCTCTCTCTAGTTTCTACAATCAATCTGGAAGAGGTTTCCCTGATATCTCATCTTTC
TCAGAAAATGTCGTTATACTCTACAAAGACAAATTGATGCCAATTGGAGGTACTTCTGCA
TCAGCTCCAATTATTGCCGGCTTATTATCATTAATTAACGACCAAAGATTACAAAAAAAT
CAAAGTCCAATTGGTCTTTTCAATCCATTACTTTATAAAATTGCAAGAGATCATCCAAAC
TCTTTCCTTGATATTGACTTTGGTGAAAATAATTATAAATGTTGTACCAATGGTTTTAAA
TCTAAAAGTGGTTGGGATCCAGTAACGGTTTAGGTTTACCAAATTTNNANAATGGTTAAA
TA
Length of 3' end seq. 652
Connected seq. ID CFC152P
Connected seq.
>CFC152P.Seq
AGATAAAAAACATTTGACACCCCAAAGGTTAAGAAGATTTGTTGAACATTCCAAGCCAAT
TTCATTGAATAAGAAAGTCTGGAAAATTACAGAAATTGAAAATATATTTTCCGCCCAAAT
TGAATTAACATTTGGAATTAGACAAAGAAATATCGTTGAGTTGGAAGATTTCGTGTGGAG
AGTTAGTGATCCAAATAATTCATTGTATGGAAGTTATAAAACTTTTGAAGAGATTAAAGA
ATGGGTTAAACCATTGGATGAATCAATTGATGCTGTAAAGAATTGGTTAATTGAAAATGA
TATAAATGAATTCACAGTGACAAAAAGCGGCGATTTCATTCGTACCATTGTTTCTATTGA
TAAAGCAGAAGAATTACTATCGGTTAGATATAATAAAATGGTACATAAATTATCCAAACA
ATCATTCTTTCGTTCTCTTGATCCTTACACTATTCCAAGAGAACTTTATGATCATATTGA
TTTCATTGGT----------GATTGGCATATACTGATCGTGTAGATACTGAATTTAAGAA
ATACGCAGCAATGGGTAGAACAATAGTATTCTCAAGTGGTGATTTTGGTGTTGGTTGTAA
TGATGATTGTGATTCATTTTCACCAGGTTGGCCAGCATCTTCCCGTTTTGTATTGGCAGT
TGGGGGGGTAATTAAAAAGAAGGATGGCAGTATCATTGGTGATGAAATATCTGGTGGTGG
TTTTAGTAACTATTTCTCCCGTCCATGGTATCAAGTGGATGAATGTTCTTCCTATATCGA
GTGGTTAAACGGTTCTCTCTCTAGTTTCTACAATCAATCTGGAAGAGGTTTCCCTGATAT
CTCATCTTTCTCAGAAAATGTCGTTATACTCTACAAAGACAAATTGATGCCAATTGGAGG
TACTTCTGCATCAGCTCCAATTATTGCCGGCTTATTATCATTAATTAACGACCAAAGATT
ACAAAAAAATCAAAGTCCAATTGGTCTTTTCAATCCATTACTTTATAAAATTGCAAGAGA
TCATCCAAACTCTTTCCTTGATATTGACTTTGGTGAAAATAATTATAAATGTTGTACCAA
TGGTTTTAAATCTAAAAGTGGTTGGGATCCAGTAACGGTTTAGGTTTACCAAATTTNNAN
AATGGTTAAATA
Length of connected seq. 1142
Full length Seq ID -
Full length Seq. -
Length of full length seq. -