>CFC147 (CFC147Q) /CSM/CF/CFC1-B/CFC147Q.Seq.d/
TACATTGCCACCATTTGATAAATGTGATAATGNCCATTGTCCAAAAGGATTTAATTGCAA
ATATGATGGGGAAAAAGATCTTGCTNTTTGTGTTNCATGGNGACCATATCCACCAGTTTG
TAXXXXXXXXXX

TLPPFDKCDNXHCPKGFNCKYDGEKDLAXCVXWXPYPPVC---

Frame A:
yiati**m**xplskri*lqi*wgkrscxlcxmxtistsl---


Frame B:
TLPPFDKCDNXHCPKGFNCKYDGEKDLAXCVXWXPYPPVC---


Frame C:
hchhlinvimxivqkdlianmmgkkillfvxhgdhihqf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC147 (CFC147Q) /CSM/CF/CFC1-B/CFC147Q.Seq.d/                        218   1e-56
SLK648 (SLK648Q) /CSM/SL/SLK6-B/SLK648Q.Seq.d/                        210   4e-54
SLG628 (SLG628Q) /CSM/SL/SLG6-B/SLG628Q.Seq.d/                        210   4e-54
SLG621 (SLG621Q) /CSM/SL/SLG6-A/SLG621Q.Seq.d/                        210   4e-54
SLG602 (SLG602Q) /CSM/SL/SLG6-A/SLG602Q.Seq.d/                        210   4e-54
SLC845 (SLC845Q) /CSM/SL/SLC8-B/SLC845Q.Seq.d/                        210   4e-54
SLB491 (SLB491Q) /CSM/SL/SLB4-D/SLB491Q.Seq.d/                        210   4e-54
SLA523 (SLA523Q) /CSM/SL/SLA5-A/SLA523Q.Seq.d/                        210   4e-54
SFK301 (SFK301Q) /CSM/SF/SFK3-A/SFK301Q.Seq.d/                        210   4e-54
SFK282 (SFK282Q) /CSM/SF/SFK2-D/SFK282Q.Seq.d/                        210   4e-54

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X52105|X52105.1 Dictyostelium discoideum SP60 gene for spore coat protein.   210   3e-51  1
X51892|X51892.1 Dictyostelium discoideum SP60 gene for spore coat protein.   210   3e-51  1
M26239|M26239.1 D.discoideum spore coat protein SP60 gene, complete cds.   210   3e-51  1
AZ974823|AZ974823.1 2M0249D08R Mouse 10kb plasmid UUGC2M library Mus musculus genomic clone UUGC2M0249D08 R, DNA sequence.    44   0.44   1
AF252827|AF252827.4 Homo sapiens chromosome 8 clone RP11-166E20 map 8q24.2, complete sequence.    42   1.7    1
AC018402|AC018402.4 Homo sapiens clone RP11-16N14, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42   1.7    1
AC100871|AC100871.2 Homo sapiens chromosome 8, clone RP11-959I15, complete sequence.    42   1.7    1
BM900343|BM900343.1 rc17e07.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5', mRNA sequence.    42   1.7    1
BQ836823|BQ836823.1 rf34f05.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidogyne hapla cDNA 5', mRNA sequence.    42   1.7    1
AC124210|AC124210.2 Homo sapiens chromosome 8 clone RP11-755E24 map 8q24.2, complete sequence.    42   1.7    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor...    89   6e-17
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for...    89   6e-17
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -...    37   0.21
(P14328) RecName: Full=Spore coat protein SP96;  &AC117075_49(AC...    37   0.21
S72639_1(S72639|pid:none) PspB=prespore-specific gene {5' region...    37   0.27
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce...    37   0.27
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor;        35   1.0
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87...    35   1.0

 psg: 0.75  gvh: 0.19  alm: 0.61  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for CFC147 is nuc

>CFC147F.Seq
TACATTGCCACCATTTGATAAATGTGATAATGNCCATTGTCCAAAAGGATTTAATTGCAA
ATATGATGGGGAAAAAGATCTTGCTNTTTGTGTTNCATGGNGACCATATCCACCAGTTTG
TA----------