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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
CFC142
Library CF
(Link to library)
Clone ID CFC142
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID CFC142P
(Link to Original site)
Representative DNA sequence 
>CFC142 (CFC142Q) /CSM/CF/CFC1-B/CFC142Q.Seq.d/
ACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGACGA
TTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTGGGT
ATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTCAGG
TGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGTTAG
AAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCATTGG
AGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAAAGA
TTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGATGA
AATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGAAAA
TGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAAATC
AACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGGTGA
TGAACCAGCAATTCGTGAAGCCXXXXXXXXXXTGTTAAGAGCACGTTTAGGTACTCATAC
TGGATTTGTAAATCAGTTAGTTACACCATATCATGTTGATATTAAATGTACAGTTAAATC
AGAAATTTCAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAAT
GGTATTGAGTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAG
TTCATCAAGTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGG
TAGTAAATTTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGA
TGATGAACAACAAGTTAGAGATACAATCAAAGATGTTAGATCCGATAGTACTGACACTAA
TTGGTGTTTAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTGCTAAAGGAAATGG
TGGTGTTGATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCG
TGAAGTTGAAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGG
TGAAGATATCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACA
ATTATTCCATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTGAATTATCCTCGAA
ATCGTTACTAAAACTATCACTCAAAATTCGGAACTCTCAAGAGAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
hnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLVGSGSG
GVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTIGGVKD
FLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTNSFRKS
TYGSVSSPSSSNKDSIKLGDEPAIREA---

---LRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQS
RGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDT
IKDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLS
DTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSELSSKSLLKLSLK
IRNSQEK
Translated Amino Acid sequence (All Frames) 
Frame A:
tqhykktiiinkngfticrrfim*isncrfkk*fnln*lgiiii*itkirkd*iswkwfr
wcsris*tftr*fgwicig*kd**nr***nr*icihqfhwrkswnlskr*nlchhwwc*r
flgfipm*flnhlke*nl**nrik*nsrylwyrfksfr*kwcknwcfkinhftnqlfqki
nirfsfftiilk*rln*ir**tsns*s---

---c*ehv*vlildl*is*lhhimlilnvqlnqkfqkrl*rkplqkhqvkhqwy*vmmln
hvvvvvv*pqvtvhqvlqlkvqtqpvkhllvlvvnlqhhqlcqnqvvqhlvsmmnnklei
qskmldpivltligv*lvikmipl*lsllkemvvlmnwsai*iqrsllma*fvklkdsis
lipsnllssislvkisivclelnlvlilvllnnysihimliymsplllnyprnry*nyhs
kfgtlkrk

Frame B:
hnttkrq*LLIRMVLQFVDDSSCKSAIADLRNDSTSTDWVLLSFESPKSEKIKLVGSGSG
GVAELVEHLQDDLVGFALVRKIDKIDDSETVKFAFINFIGEKVGIFQKGKISVTIGGVKD
FLGSFQCDFLITSKNEISDEIVLNKIQDISGTGSKVLDENGAKTGASKSTTSPTNSFRKS
TYGSVSSPSSSNKDSIKLGDEPAIREA---

---vkstfrysywicksvsytisc*y*mys*irnfkrdcrgnrcksir*singie**csi
tw*wwsydlklqfikcfnsrfkhnr*nicwcw**iyntiscakikwfntwfr**tts*ry
nqrc*ir*y*h*lvfswl*k*yhfnchc*rkwwc**igrpfefkdrclwlss*s*kirsl
*yhqicfhrfrw*ryqsyv*s*twysfwyc*tiipsisc*ftcllsf*iileivtktitq
nselsre

Frame C:
ttlqkdnny**ewfynlstihhvnqqlqi*emiqpqligyyyhlnhqnqkrln*levvqv
v*qn*lniykmiwldlhwlerliksmivkplnlhssislekklesfkkvkslsplvvlki
swvhsnvis*spqrmkslmksy*ikfkislvqvqkf*mkmvqklvlqnqplhqptlsenq
htvqflhhhpqiktqln*vmnqqfvk---

---LRARLGTHTGFVNQLVTPYHVDIKCTVKSEISKEIVEETVAKASGKASMVLSDDAQS
RGSGGRMTSSYSSSSASTQGSNTTGKTFAGAGSKFTTPSAVPKSSGSTLGFDDEQQVRDT
IKDVRSDSTDTNWCLVGYKNDTTLTVIAKGNGGVDELVGHLNSKIVAYGLVREVERFDLS
DTIKFAFIDFVGEDINRMFRAKLGTHSGTVKQLFHPYHVDLHVSSPSELSSKSLLKLSLK
IRNSQEK
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CFC142 (CFC142Q) /CSM/CF/CFC1-B/CFC142Q.Seq.d/                       2650   0.0
CHB476 (CHB476Q) /CSM/CH/CHB4-D/CHB476Q.Seq.d/                       1457   0.0
CFC366 (CFC366Q) /CSM/CF/CFC3-C/CFC366Q.Seq.d/                       1457   0.0
VFI640 (VFI640Q) /CSM/VF/VFI6-B/VFI640Q.Seq.d/                       1451   0.0
SFE348 (SFE348Q) /CSM/SF/SFE3-B/SFE348Q.Seq.d/                       1443   0.0
VFH846 (VFH846Q) /CSM/VF/VFH8-B/VFH846Q.Seq.d/                       1437   0.0
SFF593 (SFF593Q) /CSM/SF/SFF5-D/SFF593Q.Seq.d/                       1433   0.0
VFE466 (VFE466Q) /CSM/VF/VFE4-C/VFE466Q.Seq.d/                       1429   0.0
SFG453 (SFG453Q) /CSM/SF/SFG4-C/SFG453Q.Seq.d/                       1429   0.0
CFC182 (CFC182Q) /CSM/CF/CFC1-D/CFC182Q.Seq.d/                       1429   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116922|AC116922.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.  1358   0.0    2
AL445565|AL445565.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 3/3.    46   4e-04  13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.010  21
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    32   0.015  18
AC117076|AC117076.3 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    34   0.024  14
CC067446|CC067446.1 CSU-K33r.11J23.SP6 CSU-K33r Aedes aegypti genomic clone CSU-K33r.11J23, DNA sequence.    50   0.086  1
AQ651762|AQ651762.1 Sheared DNA-20H15.TR Sheared DNA Trypanosoma brucei genomic clone Sheared DNA-20H15, DNA sequence.    50   0.086  1
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.093  20
BQ916725|BQ916725.1 QHB18N09.yg.ab1 QH_ABCDI sunflower RHA801 Helianthus annuus cDNA clone QHB18N09, mRNA sequence.    40   0.11   2
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    32   0.17   13
dna update 2004. 4. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_4(AC116922|pid:none) Dictyostelium discoideum chromosom...   379   e-104
BT081567_1(BT081567|pid:none) Rana catesbeiana clone rcat-evr-52...    65   4e-09
AE017342_92(AE017342|pid:none) Cryptococcus neoformans var. neof...    64   1e-08
(A6H7G2) RecName: Full=Drebrin-like protein;  &BC146234_1(BC1462...    63   3e-08
(Q6GM14) RecName: Full=Drebrin-like protein B;  &BC074277_1(BC07...    62   4e-08
(Q7ZXQ9) RecName: Full=Drebrin-like protein A;  &BC044296_1(BC04...    62   5e-08
CR457167_1(CR457167|pid:none) Homo sapiens full open reading fra...    62   6e-08
AB170106_1(AB170106|pid:none) Macaca fascicularis brain cDNA clo...    62   6e-08
BC011677_1(BC011677|pid:none) Homo sapiens drebrin-like, mRNA (c...    62   6e-08
(Q9UJU6) RecName: Full=Drebrin-like protein; AltName: Full=Drebr...    62   6e-08
protein update 2009. 5.12
PSORT 

 psg: 0.66  gvh: 0.59  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for CFC142 is cyt
5' end seq. ID CFC142F
5' end seq. 
>CFC142F.Seq
ACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGACGA
TTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTGGGT
ATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTCAGG
TGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGTTAG
AAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCATTGG
AGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAAAGA
TTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGATGA
AATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGAAAA
TGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAAATC
AACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGGTGA
TGAACCAGCAATTCGTGAAGCC----------
Length of 5' end seq. 622
3' end seq. ID CFC142Z
3' end seq. 
>CFC142Z.Seq
----------TGTTAAGAGCACGTTTAGGTACTCATACTGGATTTGTAAATCAGTTAGTT
ACACCATATCATGTTGATATTAAATGTACAGTTAAATCAGAAATTTCAAAAGAGATTGTA
GAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAATGGTATTGAGTGATGATGCTCAA
TCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAGTTCATCAAGTGCTTCAACTCAA
GGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGGTAGTAAATTTACAACACCATCA
GCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGATGATGAACAACAAGTTAGAGAT
ACAATCAAAGATGTTAGATCCGATAGTACTGACACTAATTGGTGTTTAGTTGGTTATAAA
AATGATACCACTTTAACTGTCATTGCTAAAGGAAATGGTGGTGTTGATGAATTGGTCGGC
CATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCGTGAAGTTGAAAGATTCGATCTC
TCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGGTGAAGATATCAATCGTATGTTT
AGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACAATTATTCCATCCATATCATGTT
GATTTACATGTCTCCTCTCCTTCTGAATTATCCTCGAAATCGTTACTAAAACTATCACTC
AAAATTCGGAACTCTCAAGAGAAAA
Length of 3' end seq. 735
Connected seq. ID CFC142P
Connected seq. 
>CFC142P.Seq
ACACAACACTACAAAAAGACAATAATTATTAATAAGAATGGTTTTACAATTTGTCGACGA
TTCATCATGTAAATCAGCAATTGCAGATTTAAGAAATGATTCAACCTCAACTGATTGGGT
ATTATTATCATTTGAATCACCAAAATCAGAAAAGATTAAATTAGTTGGAAGTGGTTCAGG
TGGTGTAGCAGAATTAGTTGAACATTTACAAGATGATTTGGTTGGATTTGCATTGGTTAG
AAAGATTGATAAAATCGATGATAGTGAAACCGTTAAATTTGCATTCATCAATTTCATTGG
AGAAAAAGTTGGAATCTTTCAAAAAGGTAAAATCTCTGTCACCATTGGTGGTGTTAAAGA
TTTCTTGGGTTCATTCCAATGTGATTTCTTAATCACCTCAAAGAATGAAATCTCTGATGA
AATCGTATTAAATAAAATTCAAGATATCTCTGGTACAGGTTCAAAAGTTTTAGATGAAAA
TGGTGCAAAAACTGGTGCTTCAAAATCAACCACTTCACCAACCAACTCTTTCAGAAAATC
AACATACGGTTCAGTTTCTTCACCATCATCCTCAAATAAAGACTCAATTAAATTAGGTGA
TGAACCAGCAATTCGTGAAGCC----------TGTTAAGAGCACGTTTAGGTACTCATAC
TGGATTTGTAAATCAGTTAGTTACACCATATCATGTTGATATTAAATGTACAGTTAAATC
AGAAATTTCAAAAGAGATTGTAGAGGAAACCGTTGCAAAAGCATCAGGTAAAGCATCAAT
GGTATTGAGTGATGATGCTCAATCACGTGGTAGTGGTGGTCGTATGACCTCAAGTTACAG
TTCATCAAGTGCTTCAACTCAAGGTTCAAACACAACCGGTAAAACATTTGCTGGTGCTGG
TAGTAAATTTACAACACCATCAGCTGTGCCAAAATCAAGTGGTTCAACACTTGGTTTCGA
TGATGAACAACAAGTTAGAGATACAATCAAAGATGTTAGATCCGATAGTACTGACACTAA
TTGGTGTTTAGTTGGTTATAAAAATGATACCACTTTAACTGTCATTGCTAAAGGAAATGG
TGGTGTTGATGAATTGGTCGGCCATTTGAATTCAAAGATCGTTGCTTATGGCTTAGTTCG
TGAAGTTGAAAGATTCGATCTCTCTGATACCATCAAATTTGCTTTCATCGATTTCGTTGG
TGAAGATATCAATCGTATGTTTAGAGCTAAACTTGGTACTCATTCTGGTACTGTTAAACA
ATTATTCCATCCATATCATGTTGATTTACATGTCTCCTCTCCTTCTGAATTATCCTCGAA
ATCGTTACTAAAACTATCACTCAAAATTCGGAACTCTCAAGAGAAAA
Length of connected seq. 1357
Full length Seq ID -
Full length Seq. -
Length of full length seq. -